Wall clock time and date at job start Tue Mar 31 2020 06:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00262 * 2 1 4 4 H 1.48506 * 109.47197 * 240.00176 * 3 2 1 5 5 H 1.48507 * 109.46806 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47292 * 119.99836 * 3 2 1 7 7 C 1.37882 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99728 * 175.28320 * 7 2 1 9 9 C 1.50689 * 120.00016 * 355.55725 * 7 2 1 10 10 C 1.52999 * 115.55277 * 274.99109 * 9 7 2 11 11 N 1.46493 * 109.47473 * 294.33549 * 10 9 7 12 12 S 1.65595 * 120.00439 * 159.12475 * 11 10 9 13 13 O 1.42102 * 106.40643 * 178.53964 * 12 11 10 14 14 O 1.42106 * 106.40281 * 311.45940 * 12 11 10 15 15 C 1.76200 * 107.21967 * 64.99679 * 12 11 10 16 16 C 1.38352 * 119.85900 * 269.73098 * 15 12 11 17 17 C 1.37960 * 120.14998 * 179.72201 * 16 15 12 18 18 C 1.39571 * 119.84912 * 0.54639 * 17 16 15 19 19 C 1.47846 * 120.14259 * 179.70513 * 18 17 16 20 20 N 1.34766 * 120.00373 * 0.02562 * 19 18 17 21 21 O 1.21561 * 119.99801 * 180.02562 * 19 18 17 22 22 C 1.39577 * 119.71111 * 359.72728 * 18 17 16 23 23 C 1.37955 * 119.85683 * 0.02562 * 22 18 17 24 24 C 1.53000 * 117.49861 * 129.32345 * 9 7 2 25 25 C 1.53006 * 117.50223 * 60.66429 * 9 7 2 26 26 H 0.97004 * 120.00308 * 5.00830 * 1 2 3 27 27 H 1.09003 * 109.46842 * 54.33739 * 10 9 7 28 28 H 1.09001 * 109.47693 * 174.33211 * 10 9 7 29 29 H 0.97003 * 120.00052 * 339.12410 * 11 10 9 30 30 H 1.08003 * 119.92272 * 0.02562 * 16 15 12 31 31 H 1.08001 * 120.07437 * 180.24970 * 17 16 15 32 32 H 0.97003 * 119.99987 * 0.02562 * 20 19 18 33 33 H 0.97001 * 120.00530 * 179.97438 * 20 19 18 34 34 H 1.08008 * 120.07226 * 179.97438 * 22 18 17 35 35 H 1.07995 * 119.92949 * 179.97438 * 23 22 18 36 36 H 1.09002 * 117.49929 * 0.02562 * 24 9 7 37 37 H 1.09003 * 117.49841 * 145.01830 * 24 9 7 38 38 H 1.08990 * 117.50314 * 214.97796 * 25 9 7 39 39 H 1.09002 * 117.49018 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0817 -1.1957 -0.0775 9 6 1.2544 -2.4972 0.1000 10 6 0.9143 -2.9551 1.5197 11 7 2.1506 -3.2608 2.2436 12 16 2.1584 -3.2761 3.8994 13 8 3.4765 -3.6346 4.2913 14 8 1.5240 -2.0743 4.3149 15 6 1.1101 -4.5955 4.4139 16 6 -0.2359 -4.3610 4.6317 17 6 -1.0633 -5.3910 5.0291 18 6 -0.5374 -6.6694 5.2223 19 6 -1.4169 -7.7764 5.6544 20 7 -2.7296 -7.5525 5.8620 21 8 -0.9561 -8.8887 5.8223 22 6 0.8225 -6.8979 5.0063 23 6 1.6379 -5.8604 4.6041 24 6 1.5759 -3.5789 -0.9331 25 6 0.2483 -2.8205 -1.0066 26 1 -0.4851 0.8368 -0.0733 27 1 0.3763 -2.1615 2.0383 28 1 0.2899 -3.8474 1.4740 29 1 2.9647 -3.4543 1.7530 30 1 -0.6407 -3.3705 4.4857 31 1 -2.1145 -5.2075 5.1949 32 1 -3.0974 -6.6651 5.7277 33 1 -3.3067 -8.2789 6.1451 34 1 1.2356 -7.8848 5.1544 35 1 2.6903 -6.0358 4.4371 36 1 2.3304 -3.3482 -1.6853 37 1 1.5449 -4.6168 -0.6014 38 1 -0.6555 -3.3596 -0.7233 39 1 0.1289 -2.0903 -1.8070 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429981663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:00 Heat of formation + Delta-G solvation = -87.441343 kcal Electronic energy + Delta-G solvation = -25018.182868 eV Core-core repulsion = 21245.364647 eV Total energy + Delta-G solvation = -3772.818220 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.26173 -39.34662 -38.78057 -38.27158 -36.94287 -35.03927 -34.87387 -33.85814 -32.44792 -32.11796 -27.81767 -26.61161 -25.78923 -23.91959 -22.82713 -22.00498 -21.16164 -20.46248 -19.51942 -18.78083 -18.44932 -18.04458 -17.82645 -16.93028 -16.54968 -16.29462 -16.01744 -15.97043 -15.54997 -15.43086 -15.20084 -14.74932 -14.62311 -14.13961 -14.10334 -13.86722 -13.70693 -13.21592 -13.12820 -12.99302 -12.82009 -12.81059 -12.38599 -12.35854 -12.08604 -11.92434 -11.35577 -11.32234 -10.95845 -10.85400 -10.55497 -10.34565 -10.25696 -10.19979 -9.88168 -8.05245 -6.15239 -0.86430 -0.54471 0.15767 1.42377 1.46234 1.46553 1.50564 2.10479 2.35050 2.45911 2.52571 2.78220 3.23425 3.27615 3.58411 3.61257 3.72415 3.82111 4.14068 4.25073 4.27652 4.43819 4.60145 4.64315 4.72624 4.78747 4.80394 4.87320 4.92435 5.04398 5.10477 5.36327 5.38028 5.57876 5.70696 5.77525 5.80688 5.85918 6.24724 6.27496 6.46720 6.89904 7.14726 7.52531 9.01194 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.017771 B = 0.003588 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.254141 B = 7802.813037 C = 8276.199701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.030 3.970 3 Si 0.932 3.068 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.279 1.279 7 C -0.505 4.505 8 H 0.052 0.948 9 C 0.005 3.995 10 C 0.169 3.831 11 N -1.093 6.093 12 S 2.702 3.298 13 O -0.986 6.986 14 O -0.988 6.988 15 C -0.652 4.652 16 C -0.038 4.038 17 C -0.094 4.094 18 C -0.094 4.094 19 C 0.562 3.438 20 N -0.823 5.823 21 O -0.577 6.577 22 C -0.089 4.089 23 C -0.031 4.031 24 C -0.184 4.184 25 C -0.150 4.150 26 H 0.259 0.741 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.422 0.578 30 H 0.153 0.847 31 H 0.178 0.822 32 H 0.419 0.581 33 H 0.417 0.583 34 H 0.151 0.849 35 H 0.158 0.842 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.205 -13.384 9.590 17.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.205 1.205 7 C -0.543 4.543 8 H 0.070 0.930 9 C 0.003 3.997 10 C 0.043 3.957 11 N -0.854 5.854 12 S 2.794 3.206 13 O -0.976 6.976 14 O -0.978 6.978 15 C -0.741 4.741 16 C -0.057 4.057 17 C -0.113 4.113 18 C -0.098 4.098 19 C 0.347 3.653 20 N -0.388 5.388 21 O -0.457 6.457 22 C -0.109 4.109 23 C -0.050 4.050 24 C -0.221 4.221 25 C -0.189 4.189 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.258 0.742 30 H 0.171 0.829 31 H 0.195 0.805 32 H 0.252 0.748 33 H 0.250 0.750 34 H 0.169 0.831 35 H 0.176 0.824 36 H 0.092 0.908 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.658 -13.252 10.364 17.750 hybrid contribution -0.033 0.813 -0.465 0.938 sum -5.691 -12.438 9.899 16.885 Atomic orbital electron populations 1.70024 1.06541 1.27165 1.50030 1.25517 0.95564 1.01297 0.94726 0.86027 0.78864 0.80736 0.78517 1.19684 1.21016 1.20492 1.20649 0.92677 0.90279 1.50694 0.93020 1.19034 0.99995 0.93419 0.87263 1.20734 0.83609 0.97762 0.93609 1.54975 1.19696 1.86762 1.23955 1.01305 0.72933 0.73854 0.72508 1.93526 1.37167 1.84950 1.81968 1.93558 1.77949 1.44669 1.81672 1.31019 1.10657 1.15877 1.16560 1.21197 0.91038 1.00974 0.92482 1.21739 1.01834 0.90461 0.97243 1.20368 0.94820 0.94200 1.00390 1.18270 0.83504 0.87091 0.76421 1.43589 1.08062 1.17326 1.69858 1.90826 1.75970 1.25553 1.53375 1.21533 0.92549 1.00204 0.96582 1.21098 1.01243 0.90014 0.92643 1.23024 0.98970 0.96396 1.03722 1.22413 0.92225 1.01575 1.02652 0.93164 0.92671 0.91679 0.74187 0.82934 0.80472 0.74829 0.74990 0.83107 0.82429 0.90753 0.88456 0.90087 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.10 12.65 21.45 0.27 -48.82 16 2 C 0.03 1.59 5.43 84.66 0.46 2.05 16 3 Si 0.93 43.08 29.54 68.60 2.03 45.11 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 7 C -0.51 -25.95 8.75 25.60 0.22 -25.72 16 8 H 0.05 2.66 7.82 -2.91 -0.02 2.64 16 9 C 0.00 0.21 1.49 -52.93 -0.08 0.13 16 10 C 0.17 6.45 6.09 86.38 0.53 6.97 16 11 N -1.09 -37.07 5.88 -187.50 -1.10 -38.17 16 12 S 2.70 88.64 5.74 -56.49 -0.32 88.31 16 13 O -0.99 -34.96 17.27 -128.00 -2.21 -37.17 16 14 O -0.99 -39.69 16.66 -128.00 -2.13 -41.82 16 15 C -0.65 -16.81 5.95 22.33 0.13 -16.68 16 16 C -0.04 -0.84 9.50 22.23 0.21 -0.63 16 17 C -0.09 -1.51 9.54 22.53 0.21 -1.30 16 18 C -0.09 -1.80 5.87 -20.09 -0.12 -1.92 16 19 C 0.56 10.43 8.05 86.79 0.70 11.13 16 20 N -0.82 -7.38 8.82 -175.61 -1.55 -8.93 16 21 O -0.58 -15.42 17.18 -3.91 -0.07 -15.49 16 22 C -0.09 -1.89 9.60 22.53 0.22 -1.67 16 23 C -0.03 -0.70 9.50 22.23 0.21 -0.49 16 24 C -0.18 -6.84 9.96 30.62 0.30 -6.54 16 25 C -0.15 -6.30 9.15 30.62 0.28 -6.02 16 26 H 0.26 13.72 8.32 -92.71 -0.77 12.95 16 27 H 0.05 2.41 7.64 -2.39 -0.02 2.39 16 28 H 0.07 2.06 8.09 -2.39 -0.02 2.04 16 29 H 0.42 13.42 8.70 -96.75 -0.84 12.57 16 30 H 0.15 3.34 7.60 -2.91 -0.02 3.31 16 31 H 0.18 1.22 6.41 -2.91 -0.02 1.20 16 32 H 0.42 1.23 6.86 -92.71 -0.64 0.60 16 33 H 0.42 2.60 8.93 -92.71 -0.83 1.78 16 34 H 0.15 2.97 7.65 -2.91 -0.02 2.95 16 35 H 0.16 3.19 7.60 -2.91 -0.02 3.17 16 36 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 37 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 38 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 39 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -73.54 352.13 -2.98 -76.53 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: -1.18 Total: 21.13 kcal Atomic # 6 Polarization: -43.96 SS G_CDS: 3.28 Total: -40.68 kcal Atomic # 7 Polarization: -93.54 SS G_CDS: -2.38 Total: -95.92 kcal Atomic # 8 Polarization: -90.06 SS G_CDS: -4.41 Total: -94.47 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: 88.64 SS G_CDS: -0.32 Total: 88.31 kcal Total: -73.54 -2.98 -76.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429981663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.915 kcal (2) G-P(sol) polarization free energy of solvation -73.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds