Wall clock time and date at job start Tue Mar 31 2020 04:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47531 * 2 1 4 4 N 1.46501 * 109.47512 * 119.99993 * 2 1 3 5 5 C 1.34774 * 120.00193 * 275.00379 * 4 2 1 6 6 O 1.21704 * 119.99680 * 359.97438 * 5 4 2 7 7 C 1.46579 * 120.00354 * 179.97438 * 5 4 2 8 8 C 1.36641 * 125.45966 * 179.97438 * 7 5 4 9 9 C 1.37471 * 113.29841 * 179.97438 * 8 7 5 10 10 C 1.33816 * 115.10169 * 359.97438 * 9 8 7 11 11 S 1.70620 * 110.95201 * 359.77162 * 10 9 8 12 12 C 1.50699 * 109.47392 * 240.00096 * 2 1 3 13 13 O 1.21283 * 120.00345 * 266.29842 * 12 2 1 14 14 N 1.34780 * 120.00322 * 86.29157 * 12 2 1 15 15 C 1.47069 * 136.05974 * 184.61394 * 14 12 2 16 16 C 1.53242 * 88.08073 * 207.19971 * 15 14 12 17 17 O 1.42905 * 114.19325 * 87.72709 * 16 15 14 18 18 C 1.50691 * 114.32733 * 220.46475 * 16 15 14 19 19 H 1.08001 * 119.99852 * 93.76094 * 18 16 15 20 20 C 1.37878 * 120.00332 * 273.76635 * 18 16 15 21 21 N 1.31508 * 119.99730 * 359.97438 * 20 18 16 22 22 Si 1.86802 * 120.00033 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47288 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47068 * 119.99573 * 22 20 18 25 25 H 1.48502 * 109.46829 * 239.99899 * 22 20 18 26 26 C 1.47071 * 136.05287 * 4.97885 * 14 12 2 27 27 H 1.08997 * 109.47222 * 305.27947 * 1 2 3 28 28 H 1.09008 * 109.47435 * 65.27594 * 1 2 3 29 29 H 1.09000 * 109.47356 * 185.27594 * 1 2 3 30 30 H 0.97001 * 119.99958 * 94.99632 * 4 2 1 31 31 H 1.08004 * 123.35609 * 359.94713 * 8 7 5 32 32 H 1.07997 * 122.45195 * 180.02562 * 9 8 7 33 33 H 1.08002 * 124.52512 * 179.97438 * 10 9 8 34 34 H 1.08994 * 113.46505 * 321.93460 * 15 14 12 35 35 H 1.09001 * 113.46677 * 92.37574 * 15 14 12 36 36 H 0.96699 * 113.99610 * 86.30462 * 17 16 15 37 37 H 0.97004 * 119.99928 * 180.02562 * 21 20 18 38 38 H 1.09000 * 113.46775 * 267.62616 * 26 14 12 39 39 H 1.08999 * 113.46584 * 38.01349 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8579 1.1626 2.4117 7 6 2.6352 -0.7094 3.5541 8 6 2.8084 -0.1389 4.7836 9 6 3.2790 -1.0183 5.7296 10 6 3.4843 -2.2662 5.2923 11 16 3.0841 -2.4072 3.6397 12 6 2.0323 -0.7104 -1.2304 13 8 2.2984 -1.8927 -1.1820 14 7 2.1858 -0.0319 -2.3849 15 6 2.5539 -0.3665 -3.7689 16 6 3.0853 1.0630 -3.9186 17 8 4.4479 1.2260 -3.5199 18 6 2.7718 1.7062 -5.2448 19 1 1.8904 2.3210 -5.3518 20 6 3.6101 1.5096 -6.3217 21 7 4.6836 0.7612 -6.1913 22 14 3.2218 2.3075 -7.9655 23 1 1.9676 3.0942 -7.8499 24 1 4.3370 3.2076 -8.3546 25 1 3.0517 1.2547 -8.9988 26 6 2.0652 1.3698 -2.8134 27 1 -0.3633 0.5935 0.8389 28 1 -0.3634 0.4298 -0.9335 29 1 -0.3634 -1.0233 0.0945 30 1 2.2490 -1.6318 1.1526 31 1 2.5970 0.8997 4.9914 32 1 3.4684 -0.7238 6.7512 33 1 3.8511 -3.0768 5.9046 34 1 3.3317 -1.1268 -3.8395 35 1 1.6961 -0.5797 -4.4067 36 1 5.0880 1.0320 -4.2183 37 1 5.2736 0.6232 -6.9488 38 1 1.0759 1.6237 -3.1942 39 1 2.4275 2.0828 -2.0728 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331558310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:28 Heat of formation + Delta-G solvation = -45.081044 kcal Electronic energy + Delta-G solvation = -24699.434063 eV Core-core repulsion = 20928.452723 eV Total energy + Delta-G solvation = -3770.981340 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.30660 -39.42658 -37.94630 -37.38249 -34.82869 -34.10061 -32.22260 -31.51458 -29.64916 -28.55733 -25.78257 -25.35892 -25.20190 -23.59931 -21.36925 -20.22745 -19.68117 -19.04737 -18.18657 -17.40030 -16.56708 -16.47285 -15.77532 -15.57466 -15.30759 -15.18173 -14.70490 -14.34847 -14.23281 -13.75840 -13.42094 -13.07740 -13.03333 -12.93753 -12.76600 -12.60342 -12.36780 -12.06541 -12.01691 -11.63979 -11.58383 -11.20175 -11.12356 -10.92065 -10.50346 -10.31381 -10.19880 -9.85302 -9.40487 -9.17509 -9.03951 -8.85432 -8.80628 -8.46827 -7.96441 -6.43136 -4.54092 0.27408 1.22514 1.63832 2.16409 2.74242 3.02258 3.09409 3.12102 3.21613 3.24708 3.55776 4.15338 4.58863 4.68596 4.77199 4.80336 5.03727 5.14532 5.19290 5.21266 5.46138 5.60004 5.67196 5.75532 5.88225 5.91965 6.05152 6.06993 6.11351 6.22403 6.28143 6.36160 6.60294 6.74740 7.05389 7.36281 7.59941 7.75361 8.02846 8.33191 8.49409 8.55357 9.17414 9.44843 10.63754 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.028159 B = 0.002587 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.103039 B =10821.812908 C =10966.882217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.131 3.869 3 H 0.110 0.890 4 N -0.708 5.708 5 C 0.593 3.407 6 O -0.529 6.529 7 C -0.264 4.264 8 C -0.056 4.056 9 C -0.151 4.151 10 C -0.233 4.233 11 S 0.211 5.789 12 C 0.533 3.467 13 O -0.559 6.559 14 N -0.627 5.627 15 C 0.080 3.920 16 C 0.241 3.759 17 O -0.572 6.572 18 C -0.534 4.534 19 H 0.074 0.926 20 C 0.071 3.929 21 N -0.896 5.896 22 Si 0.910 3.090 23 H -0.269 1.269 24 H -0.280 1.280 25 H -0.281 1.281 26 C 0.097 3.903 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.407 0.593 31 H 0.155 0.845 32 H 0.145 0.855 33 H 0.169 0.831 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.395 0.605 37 H 0.274 0.726 38 H 0.091 0.909 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.700 -4.571 17.467 18.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.023 3.977 3 H 0.128 0.872 4 N -0.361 5.361 5 C 0.379 3.621 6 O -0.407 6.407 7 C -0.385 4.385 8 C -0.090 4.090 9 C -0.182 4.182 10 C -0.371 4.371 11 S 0.478 5.522 12 C 0.321 3.679 13 O -0.439 6.439 14 N -0.359 5.359 15 C -0.042 4.042 16 C 0.199 3.801 17 O -0.386 6.386 18 C -0.573 4.573 19 H 0.092 0.908 20 C -0.132 4.132 21 N -0.536 5.536 22 Si 0.737 3.263 23 H -0.194 1.194 24 H -0.206 1.206 25 H -0.207 1.207 26 C -0.026 4.026 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.244 0.756 31 H 0.172 0.828 32 H 0.163 0.837 33 H 0.186 0.814 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.252 0.748 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.865 -5.587 17.103 18.639 hybrid contribution 0.271 0.755 -0.239 0.837 sum -4.594 -4.832 16.865 18.135 Atomic orbital electron populations 1.22036 0.92503 1.03103 1.03503 1.20752 0.95797 0.98091 0.83024 0.87203 1.45674 1.67243 1.14560 1.08638 1.16906 0.77394 0.86090 0.81678 1.90831 1.50507 1.14764 1.84629 1.24624 1.16124 0.98771 0.98959 1.20808 0.96508 1.01496 0.90182 1.20046 1.04128 0.92499 1.01550 1.25379 1.08480 1.02344 1.00918 1.83307 1.58421 1.05664 1.04790 1.19826 0.78124 0.86510 0.83483 1.90634 1.53026 1.15728 1.84551 1.49703 1.65436 1.12178 1.08624 1.24186 0.99157 1.03295 0.77604 1.19479 0.81032 0.89137 0.90484 1.86023 1.16299 1.91560 1.44669 1.21437 1.10358 1.31869 0.93600 0.90766 1.25102 0.94417 0.93832 0.99803 1.69273 1.13778 1.37901 1.32680 0.86243 0.78689 0.79158 0.82218 1.19374 1.20595 1.20660 1.23515 1.00405 0.81913 0.96749 0.90870 0.90705 0.91703 0.75629 0.82786 0.83694 0.81357 0.91603 0.89981 0.74782 0.91544 0.89125 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.47 37.15 0.35 -1.70 16 2 C 0.13 2.12 2.84 -69.09 -0.20 1.93 16 3 H 0.11 1.86 7.37 -51.93 -0.38 1.48 16 4 N -0.71 -10.73 5.05 -56.28 -0.28 -11.02 16 5 C 0.59 8.99 7.75 -12.90 -0.10 8.89 16 6 O -0.53 -9.35 16.50 5.19 0.09 -9.26 16 7 C -0.26 -3.27 6.45 -36.80 -0.24 -3.51 16 8 C -0.06 -0.60 10.01 -40.44 -0.40 -1.01 16 9 C -0.15 -1.27 10.15 -41.41 -0.42 -1.69 16 10 C -0.23 -1.86 10.92 29.18 0.32 -1.54 16 11 S 0.21 2.05 22.16 -107.50 -2.38 -0.34 16 12 C 0.53 10.40 7.28 -10.98 -0.08 10.32 16 13 O -0.56 -12.19 16.81 5.55 0.09 -12.10 16 14 N -0.63 -12.80 3.69 -185.34 -0.68 -13.49 16 15 C 0.08 1.78 8.02 -8.63 -0.07 1.71 16 16 C 0.24 5.64 1.57 -91.39 -0.14 5.49 16 17 O -0.57 -14.65 13.54 -35.23 -0.48 -15.12 16 18 C -0.53 -13.02 8.69 -34.44 -0.30 -13.32 16 19 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 20 C 0.07 1.75 5.39 -17.82 -0.10 1.66 16 21 N -0.90 -22.74 11.01 55.43 0.61 -22.12 16 22 Si 0.91 19.15 29.54 -169.99 -5.02 14.12 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 24 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 25 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 26 C 0.10 1.89 7.72 -8.49 -0.07 1.83 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.41 5.92 6.91 -40.82 -0.28 5.64 16 31 H 0.15 1.56 8.06 -52.48 -0.42 1.14 16 32 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.17 0.89 8.06 -52.49 -0.42 0.46 16 34 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 35 H 0.08 1.73 8.10 -51.93 -0.42 1.31 16 36 H 0.40 10.36 6.32 45.56 0.29 10.65 16 37 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 38 H 0.09 1.56 8.10 -51.93 -0.42 1.14 16 39 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 LS Contribution 353.62 15.07 5.33 5.33 Total: -1.00 -29.51 353.62 -8.31 -37.83 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: -4.14 Total: 17.10 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: -1.44 Total: 9.07 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: -0.36 Total: -46.63 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -0.30 Total: -36.49 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.12 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.38 Total: -0.34 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.51 -8.31 -37.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331558310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.252 kcal (2) G-P(sol) polarization free energy of solvation -29.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds