Wall clock time and date at job start Tue Mar 31 2020 05:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99987 * 2 1 4 4 H 1.48501 * 109.47052 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47273 * 299.99520 * 3 2 1 6 6 H 1.48498 * 109.47161 * 60.00245 * 3 2 1 7 7 C 1.37879 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00020 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00024 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47008 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46825 * 179.97438 * 10 9 7 12 12 O 1.20830 * 119.99998 * 0.02562 * 11 10 9 13 13 O 1.34231 * 119.99870 * 179.97438 * 11 10 9 14 14 C 1.45198 * 116.99983 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.47115 * 179.97438 * 14 13 11 16 16 O 1.21238 * 119.99970 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99975 * 179.97438 * 15 14 13 18 18 C 1.34781 * 119.99763 * 180.02562 * 17 15 14 19 19 O 1.21535 * 119.99728 * 0.02562 * 18 17 15 20 20 N 1.34771 * 119.99489 * 180.02562 * 18 17 15 21 21 C 1.46505 * 119.99622 * 180.02562 * 20 18 17 22 22 C 1.50703 * 109.47064 * 179.97438 * 21 20 18 23 23 C 1.34515 * 125.79060 * 89.99944 * 22 21 20 24 24 C 1.41380 * 106.83832 * 179.97438 * 23 22 21 25 25 C 1.34506 * 106.84493 * 359.97438 * 24 23 22 26 26 O 1.34306 * 125.78568 * 269.69282 * 22 21 20 27 27 H 0.97003 * 119.99958 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.46982 * 59.99917 * 9 7 2 29 29 H 1.09008 * 109.46782 * 299.99959 * 9 7 2 30 30 H 1.08996 * 109.46973 * 60.00041 * 10 9 7 31 31 H 1.08998 * 109.46945 * 299.99428 * 10 9 7 32 32 H 1.09001 * 109.46782 * 60.00304 * 14 13 11 33 33 H 1.08992 * 109.47385 * 300.00392 * 14 13 11 34 34 H 0.97003 * 119.99860 * 0.02562 * 17 15 14 35 35 H 0.96996 * 120.00772 * 359.97438 * 20 18 17 36 36 H 1.09002 * 109.47068 * 299.99729 * 21 20 18 37 37 H 1.09001 * 109.47372 * 59.99816 * 21 20 18 38 38 H 1.07996 * 126.58016 * 0.03378 * 23 22 21 39 39 H 1.08006 * 126.57610 * 179.97438 * 24 23 22 40 40 H 1.08005 * 125.79499 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4917 -4.9672 0.0001 12 8 0.2834 -4.9671 0.0000 13 8 2.1628 -6.1297 -0.0003 14 6 1.3720 -7.3474 -0.0002 15 6 2.2900 -8.5425 -0.0014 16 8 3.4919 -8.3837 -0.0017 17 7 1.7748 -9.7880 -0.0010 18 6 2.5958 -10.8568 -0.0015 19 8 3.8007 -10.6975 -0.0018 20 7 2.0806 -12.1022 -0.0016 21 6 2.9731 -13.2640 -0.0016 22 6 2.1523 -14.5279 -0.0011 23 6 1.7235 -15.1879 -1.0920 24 6 0.9958 -16.3095 -0.6324 25 6 1.0239 -16.2683 0.7118 26 8 1.7297 -15.1895 1.0886 27 1 -0.4850 0.8401 -0.0004 28 1 0.6240 -2.5567 -0.8902 29 1 0.6247 -2.5570 0.8898 30 1 2.8719 -3.6043 0.8894 31 1 2.8718 -3.6044 -0.8906 32 1 0.7429 -7.3721 -0.8901 33 1 0.7435 -7.3724 0.8898 34 1 0.8131 -9.9150 -0.0003 35 1 1.1190 -12.2293 -0.0010 36 1 3.6020 -13.2391 -0.8915 37 1 3.6018 -13.2392 0.8885 38 1 1.9018 -14.9141 -2.1213 39 1 0.5105 -17.0563 -1.2434 40 1 0.5607 -16.9834 1.3755 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812617352.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:23 Heat of formation + Delta-G solvation = -129.819025 kcal Electronic energy + Delta-G solvation = -25239.784195 eV Core-core repulsion = 21022.375470 eV Total energy + Delta-G solvation = -4217.408726 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.17873 -41.50108 -40.12293 -38.66098 -36.18424 -35.50203 -34.93415 -33.61412 -33.54222 -31.27833 -30.99768 -29.27006 -26.64536 -25.84993 -23.06451 -22.35202 -21.98947 -21.25448 -20.85418 -19.94084 -19.55547 -18.11618 -17.62644 -17.08064 -16.95196 -16.69428 -16.37235 -16.17586 -15.73104 -15.45895 -15.17149 -14.90887 -14.47329 -14.42485 -13.95195 -13.82472 -13.42346 -13.28511 -13.22616 -12.57699 -12.53594 -12.28329 -12.26888 -11.30687 -11.20473 -10.98118 -10.67055 -10.63062 -10.53826 -10.47608 -10.08818 -10.07449 -9.96762 -9.73535 -9.60738 -9.18835 -9.17386 -8.39001 -6.02904 -4.07430 0.92174 1.71580 1.74710 2.05848 2.35986 2.68136 2.88402 2.95734 3.31198 3.38708 3.42891 3.58922 3.95468 4.18026 4.42694 4.44372 4.45657 4.77352 4.87287 4.87777 4.92114 5.20798 5.33058 5.33543 5.38072 5.46061 5.63115 5.68240 5.87143 5.98637 6.10620 6.18274 6.49398 6.51480 6.82046 7.00625 7.64766 7.67728 7.70295 7.92167 7.96097 8.14843 8.34572 8.99702 9.56958 11.08133 Molecular weight = 324.12amu Principal moments of inertia in cm(-1) A = 0.049844 B = 0.001532 C = 0.001502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.617072 B =18276.894433 C =18634.639182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.528 4.528 8 H 0.060 0.940 9 C 0.033 3.967 10 C -0.102 4.102 11 C 0.461 3.539 12 O -0.504 6.504 13 O -0.342 6.342 14 C 0.049 3.951 15 C 0.518 3.482 16 O -0.439 6.439 17 N -0.688 5.688 18 C 0.700 3.300 19 O -0.525 6.525 20 N -0.737 5.737 21 C 0.220 3.780 22 C -0.041 4.041 23 C -0.179 4.179 24 C -0.219 4.219 25 C -0.026 4.026 26 O -0.171 6.171 27 H 0.261 0.739 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.412 0.588 35 H 0.402 0.598 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.302 -35.004 -0.490 35.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.566 4.566 8 H 0.079 0.921 9 C -0.005 4.005 10 C -0.139 4.139 11 C 0.305 3.695 12 O -0.390 6.390 13 O -0.259 6.259 14 C -0.029 4.029 15 C 0.303 3.697 16 O -0.303 6.303 17 N -0.357 5.357 18 C 0.400 3.600 19 O -0.396 6.396 20 N -0.396 5.396 21 C 0.097 3.903 22 C -0.091 4.091 23 C -0.199 4.199 24 C -0.238 4.238 25 C -0.095 4.095 26 O -0.067 6.067 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.247 0.753 35 H 0.237 0.763 36 H 0.121 0.879 37 H 0.107 0.893 38 H 0.170 0.830 39 H 0.169 0.831 40 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 0.176 -34.513 -0.191 34.514 hybrid contribution -1.090 0.317 -0.199 1.153 sum -0.914 -34.195 -0.390 34.210 Atomic orbital electron populations 1.70000 1.06098 1.26665 1.50088 1.25013 0.94855 0.99350 0.95071 0.86480 0.80100 0.83490 0.77596 1.19593 1.20977 1.20972 1.21199 0.93205 0.90561 1.51649 0.92149 1.19050 0.93214 0.89248 0.98948 1.21825 1.00761 0.86884 1.04479 1.24993 0.88000 0.85214 0.71303 1.90644 1.15716 1.87408 1.45246 1.86678 1.40628 1.13592 1.85020 1.22465 0.92540 0.82374 1.05521 1.20432 0.89762 0.82861 0.76670 1.90892 1.14797 1.84670 1.39981 1.43971 1.12073 1.06213 1.73410 1.15944 0.85525 0.80152 0.78396 1.91112 1.11962 1.84417 1.52084 1.45254 1.10472 1.03732 1.80165 1.19461 0.89227 0.76605 1.05024 1.22215 1.04624 0.97734 0.84561 1.21771 1.01814 0.96655 0.99686 1.21923 1.05577 1.01396 0.94889 1.24196 0.98379 0.90592 0.96300 1.84065 1.54767 1.32971 1.34851 0.92911 0.95495 0.95510 0.88585 0.88575 0.87660 0.87655 0.75261 0.76308 0.87850 0.89277 0.82977 0.83084 0.77762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.53 -14.69 9.11 -34.44 -0.31 -15.00 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.03 0.84 4.26 -27.88 -0.12 0.73 16 10 C -0.10 -2.07 5.75 -27.88 -0.16 -2.23 16 11 C 0.46 8.75 7.96 36.01 0.29 9.04 16 12 O -0.50 -10.60 15.73 -18.75 -0.30 -10.90 16 13 O -0.34 -5.69 9.75 -45.91 -0.45 -6.14 16 14 C 0.05 0.57 5.94 36.01 0.21 0.79 16 15 C 0.52 6.46 7.85 -10.98 -0.09 6.38 16 16 O -0.44 -7.92 14.90 -25.37 -0.38 -8.30 16 17 N -0.69 -5.63 5.24 -15.78 -0.08 -5.71 16 18 C 0.70 7.17 8.50 -86.92 -0.74 6.43 16 19 O -0.52 -8.23 14.74 -18.47 -0.27 -8.50 16 20 N -0.74 -4.53 5.55 -66.42 -0.37 -4.90 16 21 C 0.22 1.36 6.20 -5.19 -0.03 1.33 16 22 C -0.04 -0.24 6.69 -35.62 -0.24 -0.48 16 23 C -0.18 -0.94 10.81 -39.70 -0.43 -1.37 16 24 C -0.22 -1.01 10.91 -39.71 -0.43 -1.44 16 25 C -0.03 -0.12 12.09 29.41 0.36 0.24 16 26 O -0.17 -1.12 10.65 5.68 0.06 -1.06 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 29 H 0.03 0.74 8.10 -51.92 -0.42 0.32 16 30 H 0.10 1.82 8.14 -51.93 -0.42 1.39 16 31 H 0.10 1.82 8.14 -51.93 -0.42 1.39 16 32 H 0.11 1.00 8.13 -51.93 -0.42 0.58 16 33 H 0.11 1.01 8.13 -51.93 -0.42 0.58 16 34 H 0.41 1.30 8.71 -40.82 -0.36 0.95 16 35 H 0.40 1.33 8.48 -40.82 -0.35 0.98 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.15 0.60 8.06 -52.49 -0.42 0.17 16 39 H 0.15 0.42 8.06 -52.48 -0.42 0.00 16 40 H 0.21 0.18 8.06 -52.48 -0.42 -0.24 16 LS Contribution 364.70 15.07 5.50 5.50 Total: -1.00 -39.88 364.70 -7.25 -47.13 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: -4.89 Total: -3.50 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -1.79 Total: 5.99 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.28 Total: -36.63 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -1.33 Total: -34.89 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -39.88 -7.25 -47.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617352.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.687 kcal (2) G-P(sol) polarization free energy of solvation -39.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds