Wall clock time and date at job start Tue Mar 31 2020 05:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99987 * 2 1 4 4 H 1.48501 * 109.47052 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47273 * 299.99520 * 3 2 1 6 6 H 1.48498 * 109.47161 * 60.00245 * 3 2 1 7 7 C 1.37879 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00020 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00024 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47008 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46825 * 179.97438 * 10 9 7 12 12 O 1.20830 * 119.99998 * 0.02562 * 11 10 9 13 13 O 1.34231 * 119.99870 * 179.97438 * 11 10 9 14 14 C 1.45198 * 116.99983 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.47115 * 179.97438 * 14 13 11 16 16 O 1.21238 * 119.99970 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99975 * 179.97438 * 15 14 13 18 18 C 1.34781 * 119.99763 * 180.02562 * 17 15 14 19 19 O 1.21535 * 119.99728 * 0.02562 * 18 17 15 20 20 N 1.34771 * 119.99489 * 180.02562 * 18 17 15 21 21 C 1.46505 * 119.99622 * 180.02562 * 20 18 17 22 22 C 1.50703 * 109.47064 * 179.97438 * 21 20 18 23 23 C 1.34515 * 125.79060 * 89.99944 * 22 21 20 24 24 C 1.41380 * 106.83832 * 179.97438 * 23 22 21 25 25 C 1.34506 * 106.84493 * 359.97438 * 24 23 22 26 26 O 1.34306 * 125.78568 * 269.69282 * 22 21 20 27 27 H 0.97003 * 119.99958 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.46982 * 59.99917 * 9 7 2 29 29 H 1.09008 * 109.46782 * 299.99959 * 9 7 2 30 30 H 1.08996 * 109.46973 * 60.00041 * 10 9 7 31 31 H 1.08998 * 109.46945 * 299.99428 * 10 9 7 32 32 H 1.09001 * 109.46782 * 60.00304 * 14 13 11 33 33 H 1.08992 * 109.47385 * 300.00392 * 14 13 11 34 34 H 0.97003 * 119.99860 * 0.02562 * 17 15 14 35 35 H 0.96996 * 120.00772 * 359.97438 * 20 18 17 36 36 H 1.09002 * 109.47068 * 299.99729 * 21 20 18 37 37 H 1.09001 * 109.47372 * 59.99816 * 21 20 18 38 38 H 1.07996 * 126.58016 * 0.03378 * 23 22 21 39 39 H 1.08006 * 126.57610 * 179.97438 * 24 23 22 40 40 H 1.08005 * 125.79499 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4917 -4.9672 0.0001 12 8 0.2834 -4.9671 0.0000 13 8 2.1628 -6.1297 -0.0003 14 6 1.3720 -7.3474 -0.0002 15 6 2.2900 -8.5425 -0.0014 16 8 3.4919 -8.3837 -0.0017 17 7 1.7748 -9.7880 -0.0010 18 6 2.5958 -10.8568 -0.0015 19 8 3.8007 -10.6975 -0.0018 20 7 2.0806 -12.1022 -0.0016 21 6 2.9731 -13.2640 -0.0016 22 6 2.1523 -14.5279 -0.0011 23 6 1.7235 -15.1879 -1.0920 24 6 0.9958 -16.3095 -0.6324 25 6 1.0239 -16.2683 0.7118 26 8 1.7297 -15.1895 1.0886 27 1 -0.4850 0.8401 -0.0004 28 1 0.6240 -2.5567 -0.8902 29 1 0.6247 -2.5570 0.8898 30 1 2.8719 -3.6043 0.8894 31 1 2.8718 -3.6044 -0.8906 32 1 0.7429 -7.3721 -0.8901 33 1 0.7435 -7.3724 0.8898 34 1 0.8131 -9.9150 -0.0003 35 1 1.1190 -12.2293 -0.0010 36 1 3.6020 -13.2391 -0.8915 37 1 3.6018 -13.2392 0.8885 38 1 1.9018 -14.9141 -2.1213 39 1 0.5105 -17.0563 -1.2434 40 1 0.5607 -16.9834 1.3755 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812617352.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:22 Heat of formation + Delta-G solvation = -158.426430 kcal Electronic energy + Delta-G solvation = -25241.024706 eV Core-core repulsion = 21022.375470 eV Total energy + Delta-G solvation = -4218.649236 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.125 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.56555 -42.43117 -41.50183 -39.68822 -37.57730 -36.25995 -35.87139 -35.63475 -33.93214 -33.17656 -31.58021 -30.33128 -27.92790 -27.01323 -24.43868 -23.32393 -22.71748 -21.89506 -21.56492 -21.48262 -20.29378 -19.21197 -18.68361 -18.20766 -18.05974 -17.85074 -17.29291 -17.20696 -16.96231 -16.46166 -16.22426 -16.01706 -15.85123 -15.26568 -15.08535 -14.82747 -14.29056 -14.27783 -13.94393 -13.77346 -13.75735 -13.55122 -13.17013 -13.03505 -12.85230 -12.48630 -12.28371 -12.01034 -11.88424 -11.75211 -11.50642 -11.43476 -11.26663 -11.03217 -10.88435 -10.56521 -10.38235 -9.56648 -8.19047 -6.31676 0.43364 0.78118 0.94980 1.18469 1.44904 1.44993 1.58487 1.62185 1.84461 2.02064 2.06966 2.44331 2.80707 3.15211 3.41091 3.57329 3.90260 4.00154 4.06274 4.09770 4.11835 4.33665 4.43372 4.46291 4.46475 4.84627 4.87989 4.88701 4.99682 5.04331 5.14091 5.20097 5.35592 5.49421 5.55171 5.58358 5.82528 6.14704 6.15466 6.32771 6.73152 6.86386 6.88145 7.16444 7.38276 8.93489 Molecular weight = 324.12amu Principal moments of inertia in cm(-1) A = 0.049844 B = 0.001532 C = 0.001502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.617072 B =18276.894433 C =18634.639182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.971 3.029 4 H -0.257 1.257 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.545 4.545 8 H 0.074 0.926 9 C 0.039 3.961 10 C -0.097 4.097 11 C 0.475 3.525 12 O -0.530 6.530 13 O -0.349 6.349 14 C 0.044 3.956 15 C 0.529 3.471 16 O -0.500 6.500 17 N -0.665 5.665 18 C 0.699 3.301 19 O -0.580 6.580 20 N -0.713 5.713 21 C 0.221 3.779 22 C -0.055 4.055 23 C -0.180 4.180 24 C -0.231 4.231 25 C -0.025 4.025 26 O -0.190 6.190 27 H 0.264 0.736 28 H -0.004 1.004 29 H -0.004 1.004 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.438 0.562 35 H 0.419 0.581 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.163 0.837 39 H 0.169 0.831 40 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.560 -36.291 -0.609 36.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.181 1.181 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.583 4.583 8 H 0.092 0.908 9 C 0.001 3.999 10 C -0.134 4.134 11 C 0.319 3.681 12 O -0.418 6.418 13 O -0.266 6.266 14 C -0.032 4.032 15 C 0.314 3.686 16 O -0.370 6.370 17 N -0.335 5.335 18 C 0.399 3.601 19 O -0.455 6.455 20 N -0.372 5.372 21 C 0.098 3.902 22 C -0.105 4.105 23 C -0.200 4.200 24 C -0.250 4.250 25 C -0.093 4.093 26 O -0.086 6.086 27 H 0.073 0.927 28 H 0.014 0.986 29 H 0.014 0.986 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.279 0.721 35 H 0.257 0.743 36 H 0.123 0.877 37 H 0.097 0.903 38 H 0.181 0.819 39 H 0.186 0.814 40 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -0.157 -35.877 -0.313 35.879 hybrid contribution -1.095 0.503 -0.162 1.216 sum -1.252 -35.374 -0.475 35.399 Atomic orbital electron populations 1.70143 1.08013 1.27820 1.51289 1.26014 0.95719 1.03563 0.94542 0.85315 0.79222 0.78379 0.77600 1.18090 1.20564 1.20570 1.21676 0.94052 0.91489 1.51062 0.90827 1.18819 0.93607 0.91497 0.95935 1.21546 0.99571 0.86129 1.06196 1.24409 0.87187 0.85661 0.70796 1.90637 1.16632 1.87925 1.46634 1.86594 1.41203 1.14354 1.84421 1.22883 0.92157 0.79837 1.08360 1.20571 0.88868 0.83995 0.75120 1.90882 1.17287 1.85611 1.43176 1.43590 1.13376 1.04563 1.71923 1.16121 0.84884 0.81191 0.77898 1.91087 1.14565 1.85267 1.54628 1.45080 1.11449 1.02394 1.78285 1.19422 0.89288 0.76789 1.04678 1.22068 1.05693 0.97919 0.84811 1.22023 1.01234 0.96666 1.00039 1.22230 1.05793 1.01664 0.95340 1.24893 0.97265 0.90071 0.97031 1.84054 1.55381 1.33813 1.35362 0.92737 0.98565 0.98601 0.86891 0.86854 0.84756 0.84826 0.72137 0.74304 0.87658 0.90317 0.81945 0.81381 0.74751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.06 13.29 21.45 0.28 -56.77 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 3 Si 0.97 43.77 29.54 68.60 2.03 45.80 16 4 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 7 C -0.54 -30.35 9.11 25.60 0.23 -30.11 16 8 H 0.07 3.81 7.74 -2.91 -0.02 3.79 16 9 C 0.04 2.05 4.26 29.85 0.13 2.18 16 10 C -0.10 -3.90 5.75 29.85 0.17 -3.73 16 11 C 0.47 17.68 7.96 71.24 0.57 18.25 16 12 O -0.53 -22.10 15.73 21.95 0.35 -21.75 16 13 O -0.35 -11.18 9.75 -45.07 -0.44 -11.61 16 14 C 0.04 0.95 5.94 71.24 0.42 1.37 16 15 C 0.53 12.60 7.85 87.66 0.69 13.29 16 16 O -0.50 -18.25 14.90 26.71 0.40 -17.85 16 17 N -0.66 -9.76 5.24 -440.52 -2.31 -12.07 16 18 C 0.70 13.83 8.50 179.05 1.52 15.35 16 19 O -0.58 -18.60 14.74 18.94 0.28 -18.32 16 20 N -0.71 -7.91 5.55 -482.34 -2.68 -10.59 16 21 C 0.22 2.66 6.20 85.63 0.53 3.19 16 22 C -0.06 -0.60 6.69 24.83 0.17 -0.43 16 23 C -0.18 -1.62 10.81 22.19 0.24 -1.38 16 24 C -0.23 -1.67 10.91 22.19 0.24 -1.43 16 25 C -0.02 -0.17 12.09 66.97 0.81 0.64 16 26 O -0.19 -2.26 10.65 -2.58 -0.03 -2.29 16 27 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 28 H 0.00 -0.24 8.10 -2.39 -0.02 -0.26 16 29 H 0.00 -0.26 8.10 -2.38 -0.02 -0.28 16 30 H 0.11 4.15 8.14 -2.39 -0.02 4.13 16 31 H 0.11 4.15 8.14 -2.39 -0.02 4.13 16 32 H 0.13 2.16 8.13 -2.39 -0.02 2.14 16 33 H 0.13 2.17 8.13 -2.39 -0.02 2.15 16 34 H 0.44 1.50 8.71 -92.71 -0.81 0.69 16 35 H 0.42 1.87 8.48 -92.71 -0.79 1.08 16 36 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 39 H 0.17 0.54 8.06 -2.91 -0.02 0.51 16 40 H 0.24 -0.22 8.06 -2.91 -0.02 -0.24 16 Total: -1.00 -89.43 364.70 3.57 -85.86 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -0.49 Total: 1.96 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 6.18 Total: 17.63 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -4.70 Total: -79.43 kcal Atomic # 8 Polarization: -72.38 SS G_CDS: 0.56 Total: -71.82 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -89.43 3.57 -85.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617352.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.565 kcal (2) G-P(sol) polarization free energy of solvation -89.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds