Wall clock time and date at job start Tue Mar 31 2020 06:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36023 * 117.00514 * 2 1 4 4 C 1.35499 * 120.47851 * 359.97438 * 3 2 1 5 5 O 1.33828 * 121.01273 * 179.97438 * 4 3 2 6 6 C 1.34295 * 122.04510 * 359.97438 * 5 4 3 7 7 C 1.48045 * 119.57086 * 180.02562 * 6 5 4 8 8 O 1.21515 * 119.99554 * 180.02562 * 7 6 5 9 9 N 1.34778 * 120.00348 * 0.02562 * 7 6 5 10 10 C 1.46502 * 119.99578 * 180.02562 * 9 7 6 11 11 H 1.08993 * 110.89040 * 34.30007 * 10 9 7 12 12 C 1.54911 * 111.00321 * 270.41587 * 10 9 7 13 13 N 1.47469 * 104.81077 * 204.95683 * 12 10 9 14 14 C 1.36937 * 125.62847 * 204.14766 * 13 12 10 15 15 H 1.08004 * 119.99755 * 354.79151 * 14 13 12 16 16 C 1.38808 * 120.00196 * 174.78970 * 14 13 12 17 17 N 1.31622 * 119.99838 * 7.06310 * 16 14 13 18 18 Si 1.86801 * 120.00272 * 187.06108 * 16 14 13 19 19 H 1.48499 * 109.46783 * 94.98539 * 18 16 14 20 20 H 1.48494 * 109.47340 * 214.98914 * 18 16 14 21 21 H 1.48502 * 109.46963 * 334.99062 * 18 16 14 22 22 C 1.47023 * 108.72324 * 24.06702 * 13 12 10 23 23 C 1.54323 * 107.27014 * 358.98104 * 22 13 12 24 24 H 1.09000 * 110.72231 * 96.16939 * 23 22 13 25 25 O 1.42904 * 110.87074 * 219.36955 * 23 22 13 26 26 C 1.35799 * 120.85153 * 359.97438 * 6 5 4 27 27 C 1.42000 * 120.49141 * 179.71877 * 3 2 1 28 28 O 1.22126 * 120.91823 * 0.02753 * 27 3 2 29 29 H 1.09000 * 109.47179 * 59.99783 * 1 2 3 30 30 H 1.08998 * 109.47292 * 300.00064 * 1 2 3 31 31 H 1.08997 * 109.46950 * 179.97438 * 1 2 3 32 32 H 1.07995 * 119.49460 * 359.95866 * 4 3 2 33 33 H 0.96993 * 119.99985 * 359.97438 * 9 7 6 34 34 H 1.08999 * 110.36684 * 323.75545 * 12 10 9 35 35 H 1.08997 * 110.36732 * 86.07944 * 12 10 9 36 36 H 0.96999 * 119.99945 * 179.97438 * 17 16 14 37 37 H 1.08998 * 109.88548 * 239.56132 * 22 13 12 38 38 H 1.09006 * 109.87916 * 118.39589 * 22 13 12 39 39 H 0.96702 * 114.00020 * 293.61402 * 25 23 22 40 40 H 1.07995 * 120.55342 * 180.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0466 1.2119 0.0000 4 6 1.3182 2.3545 -0.0005 5 8 1.9148 3.5525 0.0000 6 6 3.2514 3.6829 0.0015 7 6 3.8534 5.0354 0.0026 8 8 5.0619 5.1624 0.0035 9 7 3.0612 6.1258 0.0025 10 6 3.6572 7.4641 0.0030 11 1 4.5840 7.4771 -0.5705 12 6 3.8922 7.9668 1.4494 13 7 3.8878 9.4376 1.3427 14 6 4.4952 10.3024 2.2135 15 1 4.9632 9.9251 3.1108 16 6 4.5095 11.6638 1.9431 17 7 3.8227 12.1399 0.9262 18 14 5.5033 12.8201 3.0223 19 1 6.8376 13.0442 2.4101 20 1 4.7909 14.1172 3.1454 21 1 5.6717 12.2179 4.3693 22 6 3.1252 9.8217 0.1458 23 6 2.6551 8.5192 -0.5355 24 1 1.6368 8.2726 -0.2350 25 8 2.7488 8.6259 -1.9574 26 6 4.0577 2.5902 0.0032 27 6 3.4639 1.2983 0.0060 28 8 4.1540 0.2907 0.0108 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2398 2.2976 -0.0016 33 1 2.0966 6.0244 0.0014 34 1 3.0867 7.6319 2.1029 35 1 4.8546 7.6155 1.8214 36 1 3.8324 13.0913 0.7375 37 1 3.7626 10.3866 -0.5344 38 1 2.2621 10.4222 0.4331 39 1 2.1428 9.2727 -2.3441 40 1 5.1320 2.7007 0.0048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077389021.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:56 Heat of formation + Delta-G solvation = -102.536007 kcal Electronic energy + Delta-G solvation = -27147.985085 eV Core-core repulsion = 22931.759440 eV Total energy + Delta-G solvation = -4216.225645 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.125 amu Computer time = 2.82 seconds Orbital eigenvalues (eV) -42.46742 -40.08439 -39.43253 -38.44994 -38.01611 -35.21045 -34.41554 -32.89891 -32.08990 -31.49867 -28.65274 -28.27554 -27.31571 -25.47683 -24.32188 -24.22009 -21.57995 -20.69458 -20.40599 -19.42380 -19.10871 -18.25144 -17.20500 -17.12850 -16.91551 -16.36798 -15.96530 -15.88337 -15.45657 -15.17852 -14.94594 -14.76041 -14.62705 -14.29254 -14.18070 -14.11670 -13.32673 -13.05693 -12.78474 -12.64084 -12.19833 -12.02668 -11.94555 -11.70710 -11.36720 -11.00415 -10.86692 -10.63302 -10.22005 -10.14449 -10.08200 -10.02632 -9.95276 -9.47170 -9.13855 -8.70606 -8.66528 -7.00374 -5.85178 -3.18811 0.09000 0.57661 1.70711 2.50540 2.57172 2.80949 3.12720 3.35717 3.41650 3.42702 3.81446 3.99977 4.18716 4.37369 4.49985 4.51008 4.59807 4.76117 4.89454 4.99150 5.00800 5.12002 5.31709 5.45774 5.52435 5.63667 5.66556 5.90466 5.94818 6.21943 6.42842 6.49239 6.54910 6.68827 7.19315 7.27370 7.31615 7.39547 7.66071 7.83829 7.99872 8.09351 9.06868 9.67068 10.29147 11.27043 Molecular weight = 324.12amu Principal moments of inertia in cm(-1) A = 0.024961 B = 0.002540 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.495619 B =11021.111637 C =11407.030851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.283 6.283 3 C -0.052 4.052 4 C -0.004 4.004 5 O -0.195 6.195 6 C 0.097 3.903 7 C 0.574 3.426 8 O -0.495 6.495 9 N -0.692 5.692 10 C 0.133 3.867 11 H 0.111 0.889 12 C 0.130 3.870 13 N -0.599 5.599 14 C -0.232 4.232 15 H 0.082 0.918 16 C -0.005 4.005 17 N -0.921 5.921 18 Si 0.914 3.086 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.280 1.280 22 C 0.152 3.848 23 C 0.070 3.930 24 H 0.060 0.940 25 O -0.563 6.563 26 C -0.229 4.229 27 C 0.408 3.592 28 O -0.458 6.458 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.108 0.892 32 H 0.204 0.796 33 H 0.406 0.594 34 H 0.026 0.974 35 H 0.054 0.946 36 H 0.254 0.746 37 H 0.064 0.936 38 H 0.049 0.951 39 H 0.378 0.622 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.149 -17.826 -4.103 21.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.196 6.196 3 C -0.100 4.100 4 C -0.070 4.070 5 O -0.098 6.098 6 C 0.045 3.955 7 C 0.356 3.644 8 O -0.370 6.370 9 N -0.341 5.341 10 C 0.029 3.971 11 H 0.128 0.872 12 C 0.002 3.998 13 N -0.327 5.327 14 C -0.360 4.360 15 H 0.100 0.900 16 C -0.201 4.201 17 N -0.568 5.568 18 Si 0.744 3.256 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.205 1.205 22 C 0.027 3.973 23 C 0.010 3.990 24 H 0.078 0.922 25 O -0.368 6.368 26 C -0.251 4.251 27 C 0.295 3.705 28 O -0.341 6.341 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.126 0.874 32 H 0.220 0.780 33 H 0.241 0.759 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.226 0.774 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -10.495 -18.425 -3.991 21.576 hybrid contribution -0.864 1.007 0.456 1.403 sum -11.359 -17.418 -3.534 21.093 Atomic orbital electron populations 1.23240 0.78398 1.05121 1.01395 1.86293 1.20956 1.23674 1.88698 1.21039 0.95377 0.86036 1.07499 1.23916 0.98201 0.81097 1.03743 1.82911 1.20249 1.30860 1.75796 1.22575 0.80062 0.96360 0.96486 1.17335 0.86612 0.81900 0.78543 1.90922 1.12615 1.84406 1.49084 1.45898 1.10276 1.05784 1.72188 1.22494 0.97616 0.78062 0.98951 0.87151 1.21870 0.99612 0.86292 0.92011 1.44245 1.61760 0.98873 1.27811 1.19083 1.28765 0.87328 1.00793 0.90021 1.24843 1.00067 0.96839 0.98382 1.69923 1.43612 1.12782 1.30518 0.86067 0.79776 0.80247 0.79493 1.21411 1.21706 1.20505 1.21855 0.96386 0.90239 0.88846 1.23442 0.96850 0.97559 0.81174 0.92243 1.86461 1.65962 1.64463 1.19928 1.23178 1.03865 0.90830 1.07182 1.17097 0.86231 0.89842 0.77354 1.90851 1.65112 1.37947 1.40161 0.92273 0.92242 0.87389 0.78019 0.75862 0.95653 0.92756 0.93552 0.91785 0.93277 0.77425 0.80255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.82 101.05 0.99 1.05 16 2 O -0.28 -2.80 10.35 -35.05 -0.36 -3.16 16 3 C -0.05 -0.53 6.72 -39.12 -0.26 -0.79 16 4 C 0.00 -0.03 10.43 29.75 0.31 0.28 16 5 O -0.20 -1.68 9.06 6.99 0.06 -1.62 16 6 C 0.10 1.08 6.90 -36.43 -0.25 0.83 16 7 C 0.57 7.93 7.80 -12.24 -0.10 7.83 16 8 O -0.50 -8.56 15.95 5.35 0.09 -8.48 16 9 N -0.69 -9.11 5.21 -52.61 -0.27 -9.39 16 10 C 0.13 2.28 3.09 -65.78 -0.20 2.07 16 11 H 0.11 2.16 7.63 -51.93 -0.40 1.77 16 12 C 0.13 2.57 6.93 -2.50 -0.02 2.55 16 13 N -0.60 -14.55 3.40 -170.04 -0.58 -15.13 16 14 C -0.23 -6.25 10.26 -15.06 -0.15 -6.40 16 15 H 0.08 2.14 7.84 -52.48 -0.41 1.73 16 16 C 0.00 -0.13 5.48 -17.43 -0.10 -0.23 16 17 N -0.92 -25.87 10.36 55.49 0.57 -25.29 16 18 Si 0.91 21.54 29.56 -169.99 -5.02 16.51 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 C 0.15 3.39 5.16 -3.06 -0.02 3.38 16 23 C 0.07 1.17 3.96 -24.90 -0.10 1.07 16 24 H 0.06 0.85 8.00 -51.93 -0.42 0.43 16 25 O -0.56 -8.83 13.40 -35.23 -0.47 -9.31 16 26 C -0.23 -2.77 9.56 -38.94 -0.37 -3.14 16 27 C 0.41 5.35 6.82 -36.63 -0.25 5.10 16 28 O -0.46 -7.58 17.74 -10.43 -0.19 -7.76 16 29 H 0.06 0.15 7.66 -51.93 -0.40 -0.25 16 30 H 0.06 0.16 7.67 -51.93 -0.40 -0.24 16 31 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.20 0.57 6.22 -52.49 -0.33 0.24 16 33 H 0.41 4.16 7.94 -40.82 -0.32 3.83 16 34 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.25 6.94 8.31 -40.82 -0.34 6.61 16 37 H 0.06 1.63 7.22 -51.93 -0.37 1.25 16 38 H 0.05 1.18 7.61 -51.93 -0.40 0.79 16 39 H 0.38 4.39 9.12 45.56 0.42 4.81 16 40 H 0.18 2.22 7.56 -52.49 -0.40 1.82 16 LS Contribution 346.47 15.07 5.22 5.22 Total: -1.00 -35.01 346.47 -5.29 -40.30 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -3.82 Total: 4.50 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: -0.51 Total: 13.60 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: -0.28 Total: -49.81 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.87 Total: -30.33 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.01 -5.29 -40.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077389021.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.234 kcal (2) G-P(sol) polarization free energy of solvation -35.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.83 seconds