Wall clock time and date at job start Tue Mar 31 2020 06:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42896 * 114.00330 * 2 1 4 4 C 1.53002 * 109.47271 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47272 * 64.99741 * 4 3 2 6 6 C 1.46505 * 120.00178 * 85.00321 * 5 4 3 7 7 C 1.50700 * 109.46670 * 274.27024 * 6 5 4 8 8 H 1.07999 * 120.00401 * 1.92266 * 7 6 5 9 9 C 1.37883 * 119.99685 * 181.92953 * 7 6 5 10 10 N 1.31511 * 120.00204 * 5.26030 * 9 7 6 11 11 Si 1.86800 * 119.99849 * 185.26271 * 9 7 6 12 12 H 1.48503 * 109.47204 * 179.97438 * 11 9 7 13 13 H 1.48499 * 109.47295 * 59.99759 * 11 9 7 14 14 H 1.48501 * 109.47184 * 299.99583 * 11 9 7 15 15 S 1.65610 * 120.00216 * 265.00155 * 5 4 3 16 16 O 1.42100 * 106.39745 * 17.20950 * 15 5 4 17 17 O 1.42091 * 106.40193 * 150.13008 * 15 5 4 18 18 N 1.65603 * 107.21720 * 263.67025 * 15 5 4 19 19 C 1.46500 * 119.99890 * 64.99789 * 18 15 5 20 20 H 1.08998 * 110.43718 * 24.29755 * 19 18 15 21 21 C 1.54102 * 110.48750 * 261.75341 * 19 18 15 22 22 O 1.43744 * 107.29284 * 239.29782 * 21 19 18 23 23 C 1.44381 * 106.97866 * 26.51273 * 22 21 19 24 24 C 1.54808 * 110.48630 * 146.84375 * 19 18 15 25 25 H 1.08998 * 110.90786 * 215.99017 * 24 19 18 26 26 O 1.42908 * 110.90829 * 339.59863 * 24 19 18 27 27 H 1.08995 * 109.47215 * 300.00216 * 1 2 3 28 28 H 1.09001 * 109.47262 * 60.00144 * 1 2 3 29 29 H 1.09001 * 109.47483 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47407 * 59.99772 * 3 2 1 31 31 H 1.09000 * 109.47073 * 299.99466 * 3 2 1 32 32 H 1.08999 * 109.47275 * 304.99759 * 4 3 2 33 33 H 1.09000 * 109.47250 * 185.00099 * 4 3 2 34 34 H 1.08998 * 109.47185 * 154.26710 * 6 5 4 35 35 H 1.08998 * 109.46944 * 34.26515 * 6 5 4 36 36 H 0.97006 * 119.99792 * 355.02527 * 10 9 7 37 37 H 0.97000 * 119.99864 * 245.00046 * 18 15 5 38 38 H 1.09003 * 109.87934 * 358.71761 * 21 19 18 39 39 H 1.08997 * 109.88157 * 119.72304 * 21 19 18 40 40 H 1.09004 * 110.61931 * 78.44031 * 23 22 21 41 41 H 1.08995 * 110.61878 * 201.28297 * 23 22 21 42 42 H 0.96698 * 113.99589 * 179.97438 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 4.1810 1.3888 -2.4461 7 6 2.8719 1.5530 -3.1744 8 1 1.9707 1.1156 -2.7706 9 6 2.8247 2.2615 -4.3563 10 7 3.9360 2.7053 -4.9018 11 14 1.1822 2.5909 -5.1828 12 1 1.4022 3.3669 -6.4297 13 1 0.3126 3.3682 -4.2636 14 1 0.5259 1.3001 -5.5119 15 16 4.2413 -1.0691 -1.3190 16 8 3.5898 -1.6278 -0.1865 17 8 3.9589 -1.4676 -2.6533 18 7 5.8637 -1.3114 -1.0920 19 6 6.4843 -0.9630 0.1885 20 1 5.7422 -0.9747 0.9867 21 6 7.1611 0.4187 0.1016 22 8 8.5548 0.2312 0.3993 23 6 8.8833 -1.1283 0.0410 24 6 7.6433 -1.9371 0.5118 25 1 7.6935 -2.1405 1.5814 26 8 7.5114 -3.1509 -0.2308 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.6886 1.8464 0.8899 31 1 1.6887 1.8463 -0.8900 32 1 3.8515 0.5681 0.8409 33 1 3.9786 2.1764 0.0889 34 1 4.9037 0.9043 -3.1026 35 1 4.5577 2.3680 -2.1508 36 1 4.7808 2.5976 -4.4374 37 1 6.4031 -1.6840 -1.8069 38 1 7.0482 0.8242 -0.9039 39 1 6.7129 1.0973 0.8272 40 1 9.0152 -1.2200 -1.0371 41 1 9.7802 -1.4574 0.5656 42 1 8.2144 -3.7932 -0.0626 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413402135.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:26 Heat of formation + Delta-G solvation = -202.081516 kcal Electronic energy + Delta-G solvation = -28186.357358 eV Core-core repulsion = 24101.259047 eV Total energy + Delta-G solvation = -4085.098311 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.128 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.95484 -37.64852 -36.46025 -36.40924 -35.50259 -35.00836 -34.36631 -32.70452 -29.41194 -29.26321 -28.40208 -26.40547 -25.61055 -23.13595 -22.72394 -21.82345 -21.31019 -19.30423 -17.88348 -17.44086 -17.03954 -16.92727 -16.15667 -16.06175 -16.00158 -15.44579 -15.03636 -14.99924 -14.76205 -14.37603 -13.75653 -13.59353 -13.41419 -13.24161 -12.96438 -12.63705 -12.54509 -12.04983 -12.00239 -11.76356 -11.65139 -11.50180 -11.26115 -11.16261 -10.95659 -10.95527 -10.88484 -10.51454 -10.43831 -10.31760 -10.07980 -9.83665 -9.38783 -9.28803 -9.09601 -8.36632 -7.95679 -6.36563 -4.07824 1.26396 3.32106 3.42981 3.48331 3.59663 3.65286 4.09163 4.18891 4.25472 4.30747 4.49538 4.54828 4.70527 4.95850 5.01987 5.09204 5.32223 5.34980 5.42521 5.47661 5.51023 5.54472 5.60088 5.71288 5.75670 5.82049 5.94474 6.03149 6.07632 6.24459 6.52633 6.54780 6.85684 7.10015 7.20793 7.36264 7.51532 7.70503 8.03302 8.48911 8.82255 9.59881 11.00370 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.014194 B = 0.005193 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.148201 B = 5390.134657 C = 6255.402781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.374 6.374 3 C 0.034 3.966 4 C 0.139 3.861 5 N -0.986 5.986 6 C 0.249 3.751 7 C -0.601 4.601 8 H 0.058 0.942 9 C 0.020 3.980 10 N -0.911 5.911 11 Si 1.066 2.934 12 H -0.282 1.282 13 H -0.289 1.289 14 H -0.287 1.287 15 S 2.782 3.218 16 O -0.974 6.974 17 O -0.964 6.964 18 N -1.114 6.114 19 C 0.128 3.872 20 H 0.110 0.890 21 C 0.027 3.973 22 O -0.369 6.369 23 C 0.015 3.985 24 C 0.068 3.932 25 H 0.084 0.916 26 O -0.543 6.543 27 H 0.033 0.967 28 H 0.040 0.960 29 H 0.079 0.921 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.266 0.734 37 H 0.416 0.584 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.907 -5.690 13.972 16.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.292 6.292 3 C -0.044 4.044 4 C 0.012 3.988 5 N -0.827 5.827 6 C 0.126 3.874 7 C -0.640 4.640 8 H 0.077 0.923 9 C -0.184 4.184 10 N -0.547 5.547 11 Si 0.894 3.106 12 H -0.207 1.207 13 H -0.215 1.215 14 H -0.213 1.213 15 S 2.789 3.211 16 O -0.957 6.957 17 O -0.947 6.947 18 N -0.872 5.872 19 C 0.018 3.982 20 H 0.127 0.873 21 C -0.052 4.052 22 O -0.288 6.288 23 C -0.063 4.063 24 C 0.006 3.994 25 H 0.102 0.898 26 O -0.348 6.348 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.076 0.924 37 H 0.250 0.750 38 H 0.097 0.903 39 H 0.114 0.886 40 H 0.089 0.911 41 H 0.114 0.886 42 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 5.166 -5.328 12.477 14.517 hybrid contribution 1.336 -0.640 1.219 1.918 sum 6.502 -5.969 13.696 16.293 Atomic orbital electron populations 1.22660 0.82268 1.02082 0.99376 1.88031 1.18602 1.27297 1.95276 1.23160 0.94789 0.85512 1.00926 1.21075 0.92873 0.99146 0.85694 1.57623 1.80694 1.26980 1.17400 1.19088 0.97655 0.89936 0.80676 1.22321 0.94774 1.36736 1.10186 0.92338 1.25750 1.04081 0.93908 0.94644 1.70815 0.98804 1.46205 1.38887 0.83587 0.74228 0.76540 0.76242 1.20744 1.21514 1.21309 1.02085 0.72338 0.73190 0.73460 1.93573 1.72428 1.76404 1.53304 1.93635 1.82292 1.81509 1.37294 1.56168 1.30732 1.79557 1.20771 1.22022 0.95819 0.92911 0.87449 0.87260 1.23948 0.81448 0.96687 1.03097 1.88899 1.25309 1.28773 1.85778 1.24352 0.98114 0.82659 1.01129 1.23617 0.94423 0.85510 0.95835 0.89791 1.86575 1.52901 1.27071 1.68251 0.94875 0.94176 0.90269 0.93891 0.90475 0.90971 0.89622 0.95887 0.95883 0.92356 0.75011 0.90306 0.88560 0.91074 0.88626 0.77214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.37 -7.38 9.06 -51.79 -0.47 -7.85 16 3 C 0.03 0.61 6.03 37.16 0.22 0.83 16 4 C 0.14 2.32 5.84 -4.04 -0.02 2.30 16 5 N -0.99 -19.82 2.80 -115.66 -0.32 -20.14 16 6 C 0.25 5.93 4.46 -5.19 -0.02 5.91 16 7 C -0.60 -16.50 8.44 -34.44 -0.29 -16.79 16 8 H 0.06 1.64 6.74 -52.49 -0.35 1.29 16 9 C 0.02 0.58 5.45 -17.82 -0.10 0.48 16 10 N -0.91 -26.98 13.65 55.43 0.76 -26.22 16 11 Si 1.07 25.39 29.91 -169.99 -5.08 20.31 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 15 S 2.78 57.15 5.94 -107.50 -0.64 56.51 16 16 O -0.97 -20.98 14.80 -64.45 -0.95 -21.93 16 17 O -0.96 -24.42 17.36 -57.17 -0.99 -25.41 16 18 N -1.11 -17.55 5.01 -3.59 -0.02 -17.57 16 19 C 0.13 1.62 3.69 -66.40 -0.24 1.38 16 20 H 0.11 1.35 7.57 -51.93 -0.39 0.96 16 21 C 0.03 0.33 7.50 37.73 0.28 0.61 16 22 O -0.37 -4.50 11.52 -35.23 -0.41 -4.91 16 23 C 0.01 0.14 7.47 38.41 0.29 0.43 16 24 C 0.07 0.67 4.45 -24.53 -0.11 0.56 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 26 O -0.54 -5.50 12.29 -35.23 -0.43 -5.93 16 27 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.54 6.27 -51.93 -0.33 1.21 16 32 H 0.07 1.06 7.43 -51.93 -0.39 0.68 16 33 H 0.09 1.22 8.00 -51.93 -0.42 0.80 16 34 H 0.02 0.59 7.50 -51.93 -0.39 0.20 16 35 H 0.02 0.54 7.99 -51.93 -0.41 0.12 16 36 H 0.27 7.72 7.22 -40.82 -0.29 7.42 16 37 H 0.42 6.30 8.29 -34.47 -0.29 6.01 16 38 H 0.08 1.08 7.93 -51.93 -0.41 0.66 16 39 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.38 1.90 9.12 45.56 0.42 2.31 16 LS Contribution 357.18 15.07 5.38 5.38 Total: -1.00 -37.42 357.18 -7.49 -44.92 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -5.43 Total: 5.50 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 1.12 Total: -2.66 kcal Atomic # 7 Polarization: -64.34 SS G_CDS: 0.41 Total: -63.93 kcal Atomic # 8 Polarization: -62.77 SS G_CDS: -3.25 Total: -66.03 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.08 Total: 20.31 kcal Atomic # 16 Polarization: 57.15 SS G_CDS: -0.64 Total: 56.51 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -37.42 -7.49 -44.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413402135.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.164 kcal (2) G-P(sol) polarization free energy of solvation -37.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds