Wall clock time and date at job start Tue Mar 31 2020 04:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47153 * 2 1 4 4 C 1.52998 * 109.47553 * 239.99994 * 2 1 3 5 5 C 1.50700 * 109.47309 * 119.99894 * 2 1 3 6 6 C 1.38274 * 119.94243 * 240.25948 * 5 2 1 7 7 C 1.38140 * 120.05876 * 180.21123 * 6 5 2 8 8 C 1.38760 * 119.94026 * 359.50875 * 7 6 5 9 9 O 1.35876 * 120.05715 * 180.23755 * 8 7 6 10 10 C 1.35887 * 118.00329 * 67.39908 * 9 8 7 11 11 C 1.39003 * 119.97813 * 6.11933 * 10 9 8 12 12 C 1.38311 * 120.24880 * 179.97438 * 11 10 9 13 13 C 1.37948 * 120.21951 * 0.02562 * 12 11 10 14 14 C 1.39774 * 119.95431 * 0.02562 * 13 12 11 15 15 C 1.47829 * 120.12751 * 180.02562 * 14 13 12 16 16 O 1.21765 * 120.00247 * 180.02562 * 15 14 13 17 17 C 1.41787 * 119.99711 * 359.97438 * 15 14 13 18 18 H 1.07999 * 120.00113 * 0.02562 * 17 15 14 19 19 C 1.40350 * 119.99601 * 180.02562 * 17 15 14 20 20 N 1.30527 * 120.00393 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 119.99679 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47385 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47475 * 119.99971 * 21 19 17 24 24 H 1.48506 * 109.47372 * 239.99837 * 21 19 17 25 25 C 1.38389 * 119.98019 * 185.83669 * 10 9 8 26 26 C 1.38761 * 119.88144 * 0.25399 * 8 7 6 27 27 C 1.38133 * 119.94400 * 0.02562 * 26 8 7 28 28 H 1.08994 * 109.47048 * 300.00078 * 1 2 3 29 29 H 1.09000 * 109.46849 * 60.00309 * 1 2 3 30 30 H 1.09003 * 109.47079 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47183 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46502 * 300.00141 * 3 2 1 33 33 H 1.09002 * 109.47029 * 59.99741 * 3 2 1 34 34 H 1.09003 * 109.46849 * 300.00044 * 4 2 1 35 35 H 1.09004 * 109.47097 * 59.99250 * 4 2 1 36 36 H 1.08995 * 109.47731 * 179.97438 * 4 2 1 37 37 H 1.07995 * 119.97021 * 359.96848 * 6 5 2 38 38 H 1.07995 * 120.02506 * 179.78715 * 7 6 5 39 39 H 1.07990 * 119.87189 * 359.97254 * 11 10 9 40 40 H 1.07999 * 119.89189 * 180.02562 * 12 11 10 41 41 H 1.07997 * 120.02684 * 179.97438 * 13 12 11 42 42 H 0.97005 * 119.99617 * 180.02562 * 20 19 17 43 43 H 1.08005 * 120.10407 * 0.02562 * 25 10 9 44 44 H 1.08007 * 120.02622 * 180.02562 * 26 8 7 45 45 H 1.07997 * 119.97121 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2305 6 6 2.8228 -0.0356 2.1425 7 6 3.2883 -0.6857 3.2691 8 6 2.9534 -2.0141 3.4901 9 8 3.4060 -2.6544 4.5998 10 6 2.9314 -2.2507 5.8074 11 6 1.9187 -1.3008 5.8735 12 6 1.4312 -0.8863 7.0997 13 6 1.9470 -1.4126 8.2658 14 6 2.9661 -2.3675 8.2097 15 6 3.5213 -2.9344 9.4570 16 8 4.4094 -3.7658 9.4055 17 6 3.0203 -2.5091 10.7134 18 1 2.2329 -1.7714 10.7592 19 6 3.5478 -3.0470 11.8976 20 7 4.4998 -3.9382 11.8424 21 14 2.8873 -2.4873 13.5529 22 1 1.8193 -1.4768 13.3437 23 1 2.3295 -3.6537 14.2835 24 1 3.9883 -1.8859 14.3476 25 6 3.4525 -2.7900 6.9706 26 6 2.1560 -2.6874 2.5757 27 6 1.6980 -2.0343 1.4479 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6768 -1.7489 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7208 -1.2494 37 1 3.0798 0.9993 1.9721 38 1 3.9084 -0.1592 3.9793 39 1 1.5113 -0.8849 4.9640 40 1 0.6440 -0.1483 7.1443 41 1 1.5642 -1.0864 9.2216 42 1 4.8640 -4.3101 12.6609 43 1 4.2364 -3.5312 6.9203 44 1 1.8936 -3.7212 2.7456 45 1 1.0777 -2.5580 0.7357 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004105363.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:27 Heat of formation + Delta-G solvation = -34.669839 kcal Electronic energy + Delta-G solvation = -25928.547146 eV Core-core repulsion = 22261.946757 eV Total energy + Delta-G solvation = -3666.600390 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.151 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.81282 -39.35822 -37.82100 -36.15974 -35.57351 -32.75386 -31.37900 -30.43037 -30.14845 -28.78840 -27.69776 -27.57044 -26.74672 -23.74557 -22.80988 -22.44778 -21.62184 -20.05396 -19.38351 -18.12520 -16.84779 -16.27461 -16.06016 -15.87337 -15.13684 -15.10427 -14.79510 -14.57209 -14.19646 -13.84896 -13.75309 -13.66256 -13.30742 -13.13020 -12.95810 -12.86047 -12.54340 -12.36104 -12.21020 -12.08888 -11.99265 -11.63312 -11.49782 -11.28343 -11.18805 -11.12142 -10.99934 -10.88708 -10.75336 -10.52826 -10.37164 -10.05614 -9.11282 -9.04017 -8.62267 -8.17711 -7.68028 -7.54270 -6.36094 -4.96159 1.02618 1.22049 1.74351 2.02499 3.01524 3.10639 3.15088 3.23943 3.77483 3.97476 3.99411 4.28861 4.42155 4.60278 4.66943 4.80848 4.88014 4.95722 5.19005 5.23230 5.26987 5.28908 5.41216 5.43046 5.43449 5.51078 5.54597 5.57039 5.63287 5.74413 5.75077 5.85928 5.87216 5.92022 5.97459 5.97721 6.16883 6.20356 6.32336 6.33939 6.43459 6.64155 6.71751 6.81468 6.97491 7.20755 7.32803 7.44037 7.94295 8.00439 8.73515 8.77189 10.25477 10.47076 Molecular weight = 324.15amu Principal moments of inertia in cm(-1) A = 0.033020 B = 0.002246 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.760276 B =12463.112371 C =12865.465244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.028 4.028 3 C -0.145 4.145 4 C -0.139 4.139 5 C -0.081 4.081 6 C -0.106 4.106 7 C -0.137 4.137 8 C 0.097 3.903 9 O -0.263 6.263 10 C 0.101 3.899 11 C -0.204 4.204 12 C -0.101 4.101 13 C -0.122 4.122 14 C -0.067 4.067 15 C 0.384 3.616 16 O -0.538 6.538 17 C -0.511 4.511 18 H 0.077 0.923 19 C 0.077 3.923 20 N -0.732 5.732 21 Si 0.908 3.092 22 H -0.259 1.259 23 H -0.273 1.273 24 H -0.273 1.273 25 C -0.116 4.116 26 C -0.124 4.124 27 C -0.100 4.100 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.132 0.868 42 H 0.275 0.725 43 H 0.134 0.866 44 H 0.131 0.869 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.918 9.438 -21.590 24.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.028 4.028 3 C -0.202 4.202 4 C -0.196 4.196 5 C -0.081 4.081 6 C -0.124 4.124 7 C -0.155 4.155 8 C 0.054 3.946 9 O -0.176 6.176 10 C 0.060 3.940 11 C -0.223 4.223 12 C -0.119 4.119 13 C -0.141 4.141 14 C -0.068 4.068 15 C 0.280 3.720 16 O -0.427 6.427 17 C -0.542 4.542 18 H 0.095 0.905 19 C -0.146 4.146 20 N -0.361 5.361 21 Si 0.732 3.268 22 H -0.183 1.183 23 H -0.198 1.198 24 H -0.198 1.198 25 C -0.135 4.135 26 C -0.142 4.142 27 C -0.118 4.118 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.150 0.850 42 H 0.086 0.914 43 H 0.152 0.848 44 H 0.149 0.851 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.227 8.764 -21.593 24.399 hybrid contribution -0.463 0.451 0.756 0.995 sum -7.690 9.214 -20.837 24.047 Atomic orbital electron populations 1.21898 0.93632 1.02153 1.01943 1.19487 0.95735 0.95043 0.92584 1.21976 1.01286 0.94947 1.02027 1.21897 1.01345 1.00225 0.96114 1.19829 0.98223 0.94039 0.95998 1.21036 0.97726 1.00168 0.93442 1.21534 1.00854 0.94245 0.98904 1.18743 0.96331 0.91652 0.87871 1.84347 1.63892 1.57877 1.11438 1.19037 0.95028 0.96485 0.83483 1.21172 1.00395 1.01992 0.98738 1.20846 0.99541 0.99627 0.91932 1.21536 0.97029 0.97304 0.98202 1.21774 0.94229 0.94394 0.96390 1.18165 0.84342 0.83619 0.85889 1.90506 1.30867 1.33149 1.88206 1.20972 1.19263 1.22462 0.91528 0.90513 1.26033 0.93760 0.93596 1.01223 1.69969 1.17937 1.18641 1.29524 0.86291 0.79738 0.79530 0.81245 1.18299 1.19783 1.19790 1.20673 1.01926 1.02080 0.88780 1.21171 0.96509 1.01155 0.95372 1.20799 0.99987 0.94129 0.96929 0.92374 0.92354 0.92371 0.92182 0.92353 0.92138 0.92376 0.92357 0.92413 0.85161 0.85245 0.86380 0.86450 0.84989 0.91419 0.84806 0.85120 0.85585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 8.29 37.16 0.31 -0.63 16 2 C -0.03 -0.21 0.85 -155.66 -0.13 -0.34 16 3 C -0.15 -0.95 7.13 37.16 0.26 -0.68 16 4 C -0.14 -0.91 8.29 37.16 0.31 -0.61 16 5 C -0.08 -0.78 4.76 -104.60 -0.50 -1.28 16 6 C -0.11 -1.11 8.97 -39.60 -0.36 -1.47 16 7 C -0.14 -1.78 8.35 -39.42 -0.33 -2.11 16 8 C 0.10 1.43 4.72 -39.20 -0.18 1.24 16 9 O -0.26 -4.76 9.99 -3.50 -0.04 -4.80 16 10 C 0.10 1.96 6.53 -39.24 -0.26 1.71 16 11 C -0.20 -3.53 8.80 -39.27 -0.35 -3.88 16 12 C -0.10 -1.74 10.03 -39.66 -0.40 -2.14 16 13 C -0.12 -2.48 9.44 -39.11 -0.37 -2.85 16 14 C -0.07 -1.59 5.88 -104.87 -0.62 -2.21 16 15 C 0.38 10.93 6.92 -34.30 -0.24 10.70 16 16 O -0.54 -17.25 14.89 5.13 0.08 -17.17 16 17 C -0.51 -13.93 8.86 -37.43 -0.33 -14.26 16 18 H 0.08 1.88 6.02 -52.49 -0.32 1.57 16 19 C 0.08 2.06 5.50 -17.31 -0.10 1.97 16 20 N -0.73 -20.97 11.73 55.57 0.65 -20.32 16 21 Si 0.91 19.02 29.56 -169.99 -5.02 14.00 16 22 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 25 C -0.12 -2.61 9.54 -38.99 -0.37 -2.98 16 26 C -0.12 -1.55 9.99 -39.43 -0.39 -1.95 16 27 C -0.10 -1.02 8.70 -39.61 -0.34 -1.37 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.38 7.38 -51.93 -0.38 0.00 16 31 H 0.06 0.39 7.52 -51.93 -0.39 0.00 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.40 7.50 -51.93 -0.39 0.01 16 34 H 0.06 0.37 7.38 -51.93 -0.38 -0.01 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.13 1.11 5.89 -52.49 -0.31 0.81 16 38 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.12 1.81 6.18 -52.49 -0.32 1.49 16 40 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.13 2.55 6.20 -52.49 -0.33 2.22 16 42 H 0.27 7.01 8.29 -40.82 -0.34 6.67 16 43 H 0.13 3.17 7.65 -52.48 -0.40 2.77 16 44 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 45 H 0.13 1.01 7.09 -52.49 -0.37 0.64 16 LS Contribution 371.02 15.07 5.59 5.59 Total: -1.00 -32.37 371.02 -9.23 -41.60 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.11 Total: 4.21 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -4.38 Total: -23.12 kcal Atomic # 7 Polarization: -20.97 SS G_CDS: 0.65 Total: -20.32 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: 0.04 Total: -21.97 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.37 -9.23 -41.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004105363.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.933 kcal (2) G-P(sol) polarization free energy of solvation -32.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds