Wall clock time and date at job start Tue Mar 31 2020 04:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47153 * 2 1 4 4 C 1.52998 * 109.47553 * 239.99994 * 2 1 3 5 5 C 1.50700 * 109.47309 * 119.99894 * 2 1 3 6 6 C 1.38274 * 119.94243 * 240.25948 * 5 2 1 7 7 C 1.38140 * 120.05876 * 180.21123 * 6 5 2 8 8 C 1.38760 * 119.94026 * 359.50875 * 7 6 5 9 9 O 1.35876 * 120.05715 * 180.23755 * 8 7 6 10 10 C 1.35887 * 118.00329 * 67.39908 * 9 8 7 11 11 C 1.39003 * 119.97813 * 6.11933 * 10 9 8 12 12 C 1.38311 * 120.24880 * 179.97438 * 11 10 9 13 13 C 1.37948 * 120.21951 * 0.02562 * 12 11 10 14 14 C 1.39774 * 119.95431 * 0.02562 * 13 12 11 15 15 C 1.47829 * 120.12751 * 180.02562 * 14 13 12 16 16 O 1.21765 * 120.00247 * 180.02562 * 15 14 13 17 17 C 1.41787 * 119.99711 * 359.97438 * 15 14 13 18 18 H 1.07999 * 120.00113 * 0.02562 * 17 15 14 19 19 C 1.40350 * 119.99601 * 180.02562 * 17 15 14 20 20 N 1.30527 * 120.00393 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 119.99679 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47385 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47475 * 119.99971 * 21 19 17 24 24 H 1.48506 * 109.47372 * 239.99837 * 21 19 17 25 25 C 1.38389 * 119.98019 * 185.83669 * 10 9 8 26 26 C 1.38761 * 119.88144 * 0.25399 * 8 7 6 27 27 C 1.38133 * 119.94400 * 0.02562 * 26 8 7 28 28 H 1.08994 * 109.47048 * 300.00078 * 1 2 3 29 29 H 1.09000 * 109.46849 * 60.00309 * 1 2 3 30 30 H 1.09003 * 109.47079 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47183 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46502 * 300.00141 * 3 2 1 33 33 H 1.09002 * 109.47029 * 59.99741 * 3 2 1 34 34 H 1.09003 * 109.46849 * 300.00044 * 4 2 1 35 35 H 1.09004 * 109.47097 * 59.99250 * 4 2 1 36 36 H 1.08995 * 109.47731 * 179.97438 * 4 2 1 37 37 H 1.07995 * 119.97021 * 359.96848 * 6 5 2 38 38 H 1.07995 * 120.02506 * 179.78715 * 7 6 5 39 39 H 1.07990 * 119.87189 * 359.97254 * 11 10 9 40 40 H 1.07999 * 119.89189 * 180.02562 * 12 11 10 41 41 H 1.07997 * 120.02684 * 179.97438 * 13 12 11 42 42 H 0.97005 * 119.99617 * 180.02562 * 20 19 17 43 43 H 1.08005 * 120.10407 * 0.02562 * 25 10 9 44 44 H 1.08007 * 120.02622 * 180.02562 * 26 8 7 45 45 H 1.07997 * 119.97121 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2305 6 6 2.8228 -0.0356 2.1425 7 6 3.2883 -0.6857 3.2691 8 6 2.9534 -2.0141 3.4901 9 8 3.4060 -2.6544 4.5998 10 6 2.9314 -2.2507 5.8074 11 6 1.9187 -1.3008 5.8735 12 6 1.4312 -0.8863 7.0997 13 6 1.9470 -1.4126 8.2658 14 6 2.9661 -2.3675 8.2097 15 6 3.5213 -2.9344 9.4570 16 8 4.4094 -3.7658 9.4055 17 6 3.0203 -2.5091 10.7134 18 1 2.2329 -1.7714 10.7592 19 6 3.5478 -3.0470 11.8976 20 7 4.4998 -3.9382 11.8424 21 14 2.8873 -2.4873 13.5529 22 1 1.8193 -1.4768 13.3437 23 1 2.3295 -3.6537 14.2835 24 1 3.9883 -1.8859 14.3476 25 6 3.4525 -2.7900 6.9706 26 6 2.1560 -2.6874 2.5757 27 6 1.6980 -2.0343 1.4479 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6768 -1.7489 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7208 -1.2494 37 1 3.0798 0.9993 1.9721 38 1 3.9084 -0.1592 3.9793 39 1 1.5113 -0.8849 4.9640 40 1 0.6440 -0.1483 7.1443 41 1 1.5642 -1.0864 9.2216 42 1 4.8640 -4.3101 12.6609 43 1 4.2364 -3.5312 6.9203 44 1 1.8936 -3.7212 2.7456 45 1 1.0777 -2.5580 0.7357 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004105363.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:26 Heat of formation + Delta-G solvation = -51.310883 kcal Electronic energy + Delta-G solvation = -25929.268756 eV Core-core repulsion = 22261.946757 eV Total energy + Delta-G solvation = -3667.321999 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.151 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.00483 -40.43835 -39.41174 -37.85790 -36.58723 -34.84491 -32.29851 -31.94873 -31.70264 -29.89600 -28.75208 -28.22232 -28.05425 -25.09683 -24.18701 -23.48874 -22.99480 -21.62518 -20.20795 -19.63302 -18.33144 -18.05165 -17.13026 -16.93093 -16.75573 -16.67581 -15.76114 -15.51504 -15.29175 -15.08606 -15.03381 -14.65134 -14.54891 -14.50548 -14.41218 -14.07581 -13.73882 -13.52701 -13.31988 -13.01468 -12.90110 -12.81793 -12.76322 -12.66152 -12.50569 -12.41110 -12.07488 -12.01020 -11.88411 -11.75365 -11.63117 -11.36313 -11.04154 -10.02734 -9.85431 -9.69787 -9.64073 -9.13670 -8.39283 -7.13239 0.00587 0.11185 0.32185 0.48001 1.37438 1.38587 1.58119 2.08950 2.16942 2.20934 2.74674 2.81313 3.63361 3.67342 3.75246 3.84602 3.92226 3.95657 4.11969 4.14872 4.25192 4.28424 4.36969 4.41142 4.44742 4.50739 4.56716 4.82538 4.83697 4.85970 4.95036 4.97983 5.01840 5.04911 5.08231 5.08779 5.14709 5.23774 5.25466 5.35824 5.39972 5.43689 5.46368 5.48317 5.65099 5.67672 5.73507 5.91251 5.98214 6.60260 6.64966 6.73478 8.19017 8.44613 Molecular weight = 324.15amu Principal moments of inertia in cm(-1) A = 0.033020 B = 0.002246 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.760276 B =12463.112371 C =12865.465244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.028 4.028 3 C -0.147 4.147 4 C -0.139 4.139 5 C -0.070 4.070 6 C -0.102 4.102 7 C -0.144 4.144 8 C 0.057 3.943 9 O -0.281 6.281 10 C 0.107 3.893 11 C -0.186 4.186 12 C -0.081 4.081 13 C -0.124 4.124 14 C -0.100 4.100 15 C 0.356 3.644 16 O -0.598 6.598 17 C -0.533 4.533 18 H 0.103 0.897 19 C 0.018 3.982 20 N -0.786 5.786 21 Si 1.001 2.999 22 H -0.239 1.239 23 H -0.265 1.265 24 H -0.265 1.265 25 C -0.144 4.144 26 C -0.130 4.130 27 C -0.095 4.095 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.153 0.847 38 H 0.122 0.878 39 H 0.147 0.853 40 H 0.168 0.832 41 H 0.143 0.857 42 H 0.283 0.717 43 H 0.100 0.900 44 H 0.131 0.869 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.217 12.613 -23.264 28.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.028 4.028 3 C -0.204 4.204 4 C -0.196 4.196 5 C -0.070 4.070 6 C -0.120 4.120 7 C -0.163 4.163 8 C 0.015 3.985 9 O -0.194 6.194 10 C 0.065 3.935 11 C -0.204 4.204 12 C -0.098 4.098 13 C -0.143 4.143 14 C -0.101 4.101 15 C 0.257 3.743 16 O -0.493 6.493 17 C -0.563 4.563 18 H 0.120 0.880 19 C -0.201 4.201 20 N -0.415 5.415 21 Si 0.819 3.181 22 H -0.161 1.161 23 H -0.190 1.190 24 H -0.190 1.190 25 C -0.163 4.163 26 C -0.148 4.148 27 C -0.112 4.112 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.170 0.830 38 H 0.140 0.860 39 H 0.165 0.835 40 H 0.186 0.814 41 H 0.160 0.840 42 H 0.094 0.906 43 H 0.118 0.882 44 H 0.149 0.851 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.544 11.957 -23.303 28.235 hybrid contribution 0.542 -0.499 0.997 1.239 sum -10.002 11.459 -22.307 26.999 Atomic orbital electron populations 1.21905 0.92783 1.02479 1.02439 1.19563 0.96318 0.95368 0.91513 1.22000 1.01272 0.94375 1.02769 1.21909 1.00949 1.00500 0.96263 1.20210 0.96616 0.93837 0.96322 1.21290 0.97117 1.01115 0.92466 1.21544 1.01183 0.93618 0.99930 1.19081 0.99082 0.92895 0.87414 1.84345 1.64479 1.58685 1.11888 1.18995 0.94961 0.96189 0.83359 1.21492 0.98627 1.00191 1.00109 1.21301 0.99269 0.98986 0.90260 1.21624 0.96050 0.96488 1.00098 1.21397 0.96841 0.97043 0.94851 1.18943 0.83816 0.83091 0.88477 1.90443 1.33519 1.35862 1.89497 1.21504 1.19913 1.23046 0.91803 0.87954 1.27405 0.93426 0.92957 1.06301 1.70126 1.19680 1.20205 1.31514 0.84925 0.79437 0.79491 0.74277 1.16094 1.18953 1.18951 1.20449 1.02531 1.02967 0.90343 1.21302 0.96407 1.01337 0.95778 1.21078 0.99471 0.94417 0.96270 0.92882 0.90934 0.92169 0.92289 0.91038 0.92085 0.92157 0.90890 0.93090 0.82982 0.85984 0.83514 0.81447 0.83977 0.90611 0.88206 0.85097 0.83038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.29 71.98 0.60 -0.74 16 2 C -0.03 -0.31 0.85 -52.93 -0.05 -0.35 16 3 C -0.15 -1.39 7.13 71.98 0.51 -0.88 16 4 C -0.14 -1.37 8.29 71.98 0.60 -0.77 16 5 C -0.07 -1.14 4.76 -19.85 -0.09 -1.23 16 6 C -0.10 -1.90 8.97 22.26 0.20 -1.70 16 7 C -0.14 -3.60 8.35 22.37 0.19 -3.42 16 8 C 0.06 1.67 4.72 22.52 0.11 1.78 16 9 O -0.28 -10.65 9.99 -35.45 -0.35 -11.00 16 10 C 0.11 4.29 6.53 22.49 0.15 4.44 16 11 C -0.19 -6.09 8.80 22.47 0.20 -5.90 16 12 C -0.08 -2.54 10.03 22.22 0.22 -2.31 16 13 C -0.12 -4.97 9.44 22.57 0.21 -4.76 16 14 C -0.10 -5.07 5.88 -20.02 -0.12 -5.18 16 15 C 0.36 21.74 6.92 25.69 0.18 21.91 16 16 O -0.60 -41.92 14.89 -4.56 -0.07 -41.99 16 17 C -0.53 -29.96 8.86 23.66 0.21 -29.75 16 18 H 0.10 5.01 6.02 -2.91 -0.02 4.99 16 19 C 0.02 0.98 5.50 85.40 0.47 1.45 16 20 N -0.79 -47.33 11.73 21.89 0.26 -47.08 16 21 Si 1.00 38.99 29.56 68.60 2.03 41.02 16 22 H -0.24 -8.41 7.11 99.48 0.71 -7.70 16 23 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 24 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 25 C -0.14 -7.03 9.54 22.65 0.22 -6.81 16 26 C -0.13 -3.13 9.99 22.37 0.22 -2.91 16 27 C -0.09 -1.68 8.70 22.25 0.19 -1.49 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.56 7.38 -2.39 -0.02 0.54 16 31 H 0.06 0.58 7.52 -2.39 -0.02 0.56 16 32 H 0.07 0.51 8.14 -2.38 -0.02 0.50 16 33 H 0.06 0.58 7.50 -2.39 -0.02 0.56 16 34 H 0.06 0.57 7.38 -2.39 -0.02 0.55 16 35 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 36 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.15 2.13 5.89 -2.91 -0.02 2.11 16 38 H 0.12 3.16 8.06 -2.91 -0.02 3.14 16 39 H 0.15 4.02 6.18 -2.92 -0.02 4.00 16 40 H 0.17 3.68 8.06 -2.91 -0.02 3.66 16 41 H 0.14 5.28 6.20 -2.91 -0.02 5.27 16 42 H 0.28 15.13 8.29 -92.70 -0.77 14.36 16 43 H 0.10 5.39 7.65 -2.91 -0.02 5.37 16 44 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 45 H 0.15 1.90 7.09 -2.91 -0.02 1.88 16 Total: -1.00 -78.19 371.02 7.07 -71.12 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 1.00 Total: 26.54 kcal Atomic # 6 Polarization: -42.83 SS G_CDS: 4.21 Total: -38.61 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.26 Total: -47.08 kcal Atomic # 8 Polarization: -52.57 SS G_CDS: -0.42 Total: -52.99 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Total: -78.19 7.07 -71.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004105363.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.806 kcal (2) G-P(sol) polarization free energy of solvation -78.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds