Wall clock time and date at job start Tue Mar 31 2020 05:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99632 * 2 1 4 4 H 1.48500 * 109.46864 * 269.99291 * 3 2 1 5 5 H 1.48493 * 109.47504 * 29.99349 * 3 2 1 6 6 H 1.48501 * 109.47233 * 149.99965 * 3 2 1 7 7 C 1.37870 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00140 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00467 * 0.02562 * 7 2 1 10 10 N 1.46892 * 109.47549 * 179.97438 * 9 7 2 11 11 C 1.46901 * 111.00341 * 169.99751 * 10 9 7 12 12 C 1.53238 * 109.34237 * 187.25387 * 11 10 9 13 13 N 1.47084 * 108.51993 * 306.17185 * 12 11 10 14 14 C 1.34772 * 120.87738 * 231.18593 * 13 12 11 15 15 O 1.21601 * 120.00360 * 5.74082 * 14 13 12 16 16 C 1.47468 * 119.99728 * 185.74477 * 14 13 12 17 17 C 1.38714 * 120.37946 * 53.90329 * 16 14 13 18 18 C 1.38904 * 120.65401 * 179.97438 * 17 16 14 19 19 C 1.36286 * 121.17579 * 0.02562 * 18 17 16 20 20 C 1.40558 * 120.12227 * 359.97438 * 19 18 17 21 21 C 1.40579 * 121.16053 * 180.02562 * 20 19 18 22 22 C 1.36133 * 119.65516 * 179.97438 * 21 20 19 23 23 C 1.39298 * 120.94673 * 0.02562 * 22 21 20 24 24 C 1.36260 * 120.93666 * 359.97438 * 23 22 21 25 25 C 1.40131 * 119.68560 * 359.96080 * 24 23 22 26 26 C 1.47084 * 118.23608 * 51.45886 * 13 12 11 27 27 C 1.46897 * 111.00050 * 294.30216 * 10 9 7 28 28 H 0.96995 * 120.00659 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46915 * 59.99085 * 9 7 2 30 30 H 1.08998 * 109.46666 * 300.00255 * 9 7 2 31 31 H 1.09004 * 109.48829 * 67.29396 * 11 10 9 32 32 H 1.09000 * 109.51359 * 307.23188 * 11 10 9 33 33 H 1.08992 * 109.63081 * 186.46258 * 12 11 10 34 34 H 1.09000 * 109.62873 * 65.87778 * 12 11 10 35 35 H 1.08003 * 119.67265 * 0.02562 * 17 16 14 36 36 H 1.08000 * 119.41226 * 179.97438 * 18 17 16 37 37 H 1.08000 * 119.93887 * 179.72751 * 19 18 17 38 38 H 1.08005 * 120.17028 * 359.95499 * 21 20 19 39 39 H 1.08002 * 119.52506 * 179.97438 * 22 21 20 40 40 H 1.08007 * 119.53272 * 180.02562 * 23 22 21 41 41 H 1.08004 * 120.15353 * 180.02562 * 24 23 22 42 42 H 1.09003 * 109.62907 * 68.25155 * 26 13 12 43 43 H 1.09000 * 109.62415 * 188.83173 * 26 13 12 44 44 H 1.09001 * 109.49690 * 292.70596 * 27 10 9 45 45 H 1.09010 * 109.49492 * 52.78475 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5213 -4.8935 0.2387 12 6 2.5639 -6.0032 0.4115 13 7 3.4617 -5.9862 -0.7534 14 6 3.7120 -7.1123 -1.4502 15 8 3.1141 -8.1373 -1.1845 16 6 4.7111 -7.1014 -2.5349 17 6 6.0013 -6.6516 -2.2958 18 6 6.9470 -6.6394 -3.3131 19 6 6.6369 -7.0662 -4.5697 20 6 5.3418 -7.5304 -4.8575 21 6 4.9984 -7.9761 -6.1458 22 6 3.7349 -8.4200 -6.3904 23 6 2.7744 -8.4389 -5.3817 24 6 3.0732 -8.0141 -4.1220 25 6 4.3641 -7.5518 -3.8334 26 6 4.0839 -4.7089 -1.1338 27 6 2.9768 -3.6491 -1.2493 28 1 -0.4851 0.8399 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6241 -2.5567 0.8903 31 1 0.8797 -5.1264 -0.6111 32 1 0.9158 -4.8194 1.1420 33 1 2.0634 -6.9694 0.4740 34 1 3.1396 -5.8264 1.3201 35 1 6.2735 -6.3083 -1.3086 36 1 7.9455 -6.2847 -3.1048 37 1 7.3866 -7.0439 -5.3468 38 1 5.7331 -7.9662 -6.9374 39 1 3.4732 -8.7615 -7.3811 40 1 1.7790 -8.7961 -5.6010 41 1 2.3188 -8.0346 -3.3493 42 1 4.8028 -4.4101 -0.3709 43 1 4.5887 -4.8191 -2.0936 44 1 2.3150 -3.8992 -2.0785 45 1 3.4273 -2.6721 -1.4251 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027890584.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:06 Heat of formation + Delta-G solvation = 23.231447 kcal Electronic energy + Delta-G solvation = -27064.907260 eV Core-core repulsion = 23433.110409 eV Total energy + Delta-G solvation = -3631.796850 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.96967 -39.47377 -37.48087 -36.59641 -34.41965 -33.01004 -32.38555 -30.88148 -30.50806 -29.49796 -28.16440 -25.73899 -24.10804 -23.47389 -23.05587 -22.85411 -21.77463 -20.52739 -18.92811 -17.90444 -17.17425 -16.84483 -16.40530 -16.20915 -15.73399 -15.14796 -14.79156 -14.53400 -14.38198 -14.23350 -13.86324 -13.73983 -13.69804 -13.52848 -13.48657 -13.05544 -12.62434 -12.34893 -12.26646 -11.92237 -11.51293 -11.34939 -11.31342 -11.19534 -11.09532 -10.94467 -10.76914 -10.63910 -10.55233 -10.15417 -9.91570 -9.69607 -9.29589 -8.82704 -8.55012 -8.46549 -8.05640 -7.35447 -6.07910 -4.10122 0.17648 0.81531 1.70116 2.60369 2.83004 3.11074 3.28024 3.34811 3.38299 3.92394 4.30421 4.37336 4.53689 4.61410 4.70859 4.78764 4.83881 4.91076 5.13446 5.16770 5.25529 5.25784 5.28650 5.37789 5.44732 5.54949 5.63819 5.71139 5.73059 5.84951 5.86766 5.93897 5.99400 6.02448 6.14371 6.25529 6.34096 6.38990 6.42154 6.46045 6.56358 6.65699 6.77837 7.19508 7.26145 7.46825 7.72098 7.98987 8.09631 8.15788 8.45170 8.96932 9.54504 11.02920 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.015016 B = 0.003131 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.221772 B = 8940.191047 C = 9327.775641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.535 5.535 11 C 0.041 3.959 12 C 0.117 3.883 13 N -0.599 5.599 14 C 0.560 3.440 15 O -0.542 6.542 16 C -0.107 4.107 17 C -0.080 4.080 18 C -0.120 4.120 19 C -0.089 4.089 20 C -0.055 4.055 21 C -0.109 4.109 22 C -0.114 4.114 23 C -0.115 4.115 24 C -0.098 4.098 25 C -0.018 4.018 26 C 0.106 3.894 27 C 0.051 3.949 28 H 0.262 0.738 29 H -0.009 1.009 30 H 0.032 0.968 31 H 0.027 0.973 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.133 0.867 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.025 0.975 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.137 -15.562 -10.129 22.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.548 4.548 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.260 5.260 11 C -0.088 4.088 12 C -0.005 4.005 13 N -0.331 5.331 14 C 0.348 3.652 15 O -0.421 6.421 16 C -0.110 4.110 17 C -0.098 4.098 18 C -0.138 4.138 19 C -0.107 4.107 20 C -0.055 4.055 21 C -0.127 4.127 22 C -0.132 4.132 23 C -0.133 4.133 24 C -0.115 4.115 25 C -0.019 4.019 26 C -0.017 4.017 27 C -0.078 4.078 28 H 0.071 0.929 29 H 0.009 0.991 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.151 0.849 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.043 0.957 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.965 -15.884 -9.573 22.071 hybrid contribution -0.237 0.962 -0.645 1.182 sum 11.728 -14.922 -10.217 21.555 Atomic orbital electron populations 1.69956 1.06098 1.26879 1.50743 1.24993 0.94861 0.99360 0.95348 0.86498 0.79818 0.83073 0.78042 1.20731 1.21242 1.19718 1.21130 0.93453 0.89855 1.50398 0.91801 1.19726 0.89999 0.87155 0.96244 1.62088 1.28079 1.02708 1.33164 1.22401 0.94919 0.90520 1.01007 1.21813 0.91773 0.99715 0.87175 1.48198 1.46437 1.08406 1.30063 1.18193 0.82113 0.83445 0.81442 1.90772 1.50801 1.31940 1.68540 1.19939 0.95035 1.02512 0.93524 1.21317 0.92022 0.96602 0.99885 1.20762 0.99689 1.00473 0.92910 1.21159 0.95131 0.97212 0.97192 1.18026 0.93636 1.00254 0.93598 1.21008 0.97047 0.99267 0.95351 1.20883 0.93467 0.99548 0.99327 1.20928 0.99715 0.99680 0.92966 1.21203 0.95710 0.97213 0.97422 1.17796 0.94070 0.98267 0.91737 1.22243 0.96328 0.82324 1.00781 1.22405 0.95045 0.98958 0.91391 0.92854 0.99117 0.94982 0.95502 0.89947 0.89258 0.90657 0.85091 0.85177 0.85213 0.85398 0.85854 0.85774 0.84928 0.90443 0.89922 0.95675 0.88416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.23 13.29 55.43 0.74 -25.49 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 7 C -0.51 -13.80 8.41 -34.44 -0.29 -14.09 16 8 H 0.06 1.69 7.13 -52.48 -0.37 1.31 16 9 C 0.19 4.90 4.72 -4.98 -0.02 4.88 16 10 N -0.54 -11.05 4.62 -235.47 -1.09 -12.14 16 11 C 0.04 0.73 5.62 -3.70 -0.02 0.71 16 12 C 0.12 1.82 6.61 -3.60 -0.02 1.80 16 13 N -0.60 -9.21 3.00 -173.43 -0.52 -9.73 16 14 C 0.56 8.86 6.46 -12.50 -0.08 8.78 16 15 O -0.54 -9.94 15.15 5.28 0.08 -9.86 16 16 C -0.11 -1.47 4.63 -104.62 -0.48 -1.95 16 17 C -0.08 -0.88 7.80 -39.16 -0.31 -1.18 16 18 C -0.12 -1.09 9.92 -40.04 -0.40 -1.49 16 19 C -0.09 -0.82 9.75 -39.41 -0.38 -1.20 16 20 C -0.06 -0.62 5.74 -106.86 -0.61 -1.24 16 21 C -0.11 -1.03 9.77 -39.46 -0.39 -1.42 16 22 C -0.11 -1.08 9.95 -39.94 -0.40 -1.48 16 23 C -0.11 -1.27 9.95 -39.90 -0.40 -1.67 16 24 C -0.10 -1.32 9.21 -39.58 -0.36 -1.69 16 25 C -0.02 -0.24 5.76 -106.56 -0.61 -0.86 16 26 C 0.11 1.55 5.71 -3.36 -0.02 1.53 16 27 C 0.05 0.94 5.47 -3.46 -0.02 0.92 16 28 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 29 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 30 H 0.03 0.87 7.97 -51.93 -0.41 0.45 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 1.42 7.99 -51.93 -0.41 1.00 16 33 H 0.09 1.36 7.04 -51.93 -0.37 1.00 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.13 1.28 7.73 -52.48 -0.41 0.87 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 37 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 38 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 39 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 41 H 0.13 1.98 6.40 -52.48 -0.34 1.64 16 42 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.08 1.08 5.54 -51.93 -0.29 0.79 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.10 1.90 6.67 -51.92 -0.35 1.55 16 LS Contribution 363.62 15.07 5.48 5.48 Total: -1.00 -31.97 363.62 -11.56 -43.53 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.31 Total: 0.39 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -4.92 Total: -8.21 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -0.87 Total: -47.37 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.08 Total: -9.86 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.97 -11.56 -43.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027890584.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.757 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds