Wall clock time and date at job start Tue Mar 31 2020 05:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99632 * 2 1 4 4 H 1.48500 * 109.46864 * 269.99291 * 3 2 1 5 5 H 1.48493 * 109.47504 * 29.99349 * 3 2 1 6 6 H 1.48501 * 109.47233 * 149.99965 * 3 2 1 7 7 C 1.37870 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00140 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00467 * 0.02562 * 7 2 1 10 10 N 1.46892 * 109.47549 * 179.97438 * 9 7 2 11 11 C 1.46901 * 111.00341 * 169.99751 * 10 9 7 12 12 C 1.53238 * 109.34237 * 187.25387 * 11 10 9 13 13 N 1.47084 * 108.51993 * 306.17185 * 12 11 10 14 14 C 1.34772 * 120.87738 * 231.18593 * 13 12 11 15 15 O 1.21601 * 120.00360 * 5.74082 * 14 13 12 16 16 C 1.47468 * 119.99728 * 185.74477 * 14 13 12 17 17 C 1.38714 * 120.37946 * 53.90329 * 16 14 13 18 18 C 1.38904 * 120.65401 * 179.97438 * 17 16 14 19 19 C 1.36286 * 121.17579 * 0.02562 * 18 17 16 20 20 C 1.40558 * 120.12227 * 359.97438 * 19 18 17 21 21 C 1.40579 * 121.16053 * 180.02562 * 20 19 18 22 22 C 1.36133 * 119.65516 * 179.97438 * 21 20 19 23 23 C 1.39298 * 120.94673 * 0.02562 * 22 21 20 24 24 C 1.36260 * 120.93666 * 359.97438 * 23 22 21 25 25 C 1.40131 * 119.68560 * 359.96080 * 24 23 22 26 26 C 1.47084 * 118.23608 * 51.45886 * 13 12 11 27 27 C 1.46897 * 111.00050 * 294.30216 * 10 9 7 28 28 H 0.96995 * 120.00659 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46915 * 59.99085 * 9 7 2 30 30 H 1.08998 * 109.46666 * 300.00255 * 9 7 2 31 31 H 1.09004 * 109.48829 * 67.29396 * 11 10 9 32 32 H 1.09000 * 109.51359 * 307.23188 * 11 10 9 33 33 H 1.08992 * 109.63081 * 186.46258 * 12 11 10 34 34 H 1.09000 * 109.62873 * 65.87778 * 12 11 10 35 35 H 1.08003 * 119.67265 * 0.02562 * 17 16 14 36 36 H 1.08000 * 119.41226 * 179.97438 * 18 17 16 37 37 H 1.08000 * 119.93887 * 179.72751 * 19 18 17 38 38 H 1.08005 * 120.17028 * 359.95499 * 21 20 19 39 39 H 1.08002 * 119.52506 * 179.97438 * 22 21 20 40 40 H 1.08007 * 119.53272 * 180.02562 * 23 22 21 41 41 H 1.08004 * 120.15353 * 180.02562 * 24 23 22 42 42 H 1.09003 * 109.62907 * 68.25155 * 26 13 12 43 43 H 1.09000 * 109.62415 * 188.83173 * 26 13 12 44 44 H 1.09001 * 109.49690 * 292.70596 * 27 10 9 45 45 H 1.09010 * 109.49492 * 52.78475 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5213 -4.8935 0.2387 12 6 2.5639 -6.0032 0.4115 13 7 3.4617 -5.9862 -0.7534 14 6 3.7120 -7.1123 -1.4502 15 8 3.1141 -8.1373 -1.1845 16 6 4.7111 -7.1014 -2.5349 17 6 6.0013 -6.6516 -2.2958 18 6 6.9470 -6.6394 -3.3131 19 6 6.6369 -7.0662 -4.5697 20 6 5.3418 -7.5304 -4.8575 21 6 4.9984 -7.9761 -6.1458 22 6 3.7349 -8.4200 -6.3904 23 6 2.7744 -8.4389 -5.3817 24 6 3.0732 -8.0141 -4.1220 25 6 4.3641 -7.5518 -3.8334 26 6 4.0839 -4.7089 -1.1338 27 6 2.9768 -3.6491 -1.2493 28 1 -0.4851 0.8399 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6241 -2.5567 0.8903 31 1 0.8797 -5.1264 -0.6111 32 1 0.9158 -4.8194 1.1420 33 1 2.0634 -6.9694 0.4740 34 1 3.1396 -5.8264 1.3201 35 1 6.2735 -6.3083 -1.3086 36 1 7.9455 -6.2847 -3.1048 37 1 7.3866 -7.0439 -5.3468 38 1 5.7331 -7.9662 -6.9374 39 1 3.4732 -8.7615 -7.3811 40 1 1.7790 -8.7961 -5.6010 41 1 2.3188 -8.0346 -3.3493 42 1 4.8028 -4.4101 -0.3709 43 1 4.5887 -4.8191 -2.0936 44 1 2.3150 -3.8992 -2.0785 45 1 3.4273 -2.6721 -1.4251 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000027890584.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:05 Heat of formation + Delta-G solvation = 4.358246 kcal Electronic energy + Delta-G solvation = -27065.725663 eV Core-core repulsion = 23433.110409 eV Total energy + Delta-G solvation = -3632.615254 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.95645 -40.58412 -38.95216 -37.40221 -36.00130 -34.47151 -33.77883 -32.21586 -31.30499 -30.52908 -29.78044 -27.40484 -25.19730 -24.79594 -24.06108 -23.85903 -23.32883 -21.89144 -20.14132 -18.82146 -18.50749 -18.14100 -17.83478 -17.23956 -16.75004 -16.66302 -16.26965 -16.05191 -15.58211 -15.37592 -15.23993 -15.16954 -14.62872 -14.57264 -14.46810 -14.20061 -14.05254 -13.65809 -13.50253 -13.11035 -13.01356 -12.78411 -12.63426 -12.52789 -12.37299 -12.26317 -12.18710 -12.09222 -11.93995 -11.77249 -11.30254 -11.08135 -10.81897 -10.62711 -9.86947 -9.62241 -9.12818 -8.87518 -8.20750 -6.31521 -0.64446 0.02234 0.82068 1.43403 1.44846 1.52059 1.56445 1.84676 2.07680 2.40956 3.09307 3.11328 3.17936 3.31008 3.72884 3.86799 3.90946 3.92131 3.97926 4.08535 4.16856 4.20341 4.27212 4.34673 4.36210 4.41013 4.46779 4.56713 4.66385 4.71686 4.79038 4.88030 4.92919 4.95428 5.11078 5.13293 5.15303 5.19185 5.27916 5.36228 5.38472 5.55150 5.59434 5.62805 5.81475 5.99953 6.01744 6.15694 6.30273 6.51296 6.83995 6.94358 7.38637 8.90828 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.015016 B = 0.003131 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.221772 B = 8940.191047 C = 9327.775641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.000 4.000 3 Si 0.972 3.028 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.259 1.259 7 C -0.521 4.521 8 H 0.071 0.929 9 C 0.208 3.792 10 N -0.534 5.534 11 C 0.043 3.957 12 C 0.126 3.874 13 N -0.602 5.602 14 C 0.562 3.438 15 O -0.577 6.577 16 C -0.146 4.146 17 C -0.068 4.068 18 C -0.125 4.125 19 C -0.074 4.074 20 C -0.076 4.076 21 C -0.098 4.098 22 C -0.125 4.125 23 C -0.112 4.112 24 C -0.139 4.139 25 C -0.038 4.038 26 C 0.121 3.879 27 C 0.052 3.948 28 H 0.264 0.736 29 H -0.044 1.044 30 H 0.007 0.993 31 H 0.010 0.990 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.144 0.856 36 H 0.166 0.834 37 H 0.169 0.831 38 H 0.166 0.834 39 H 0.155 0.845 40 H 0.136 0.864 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.006 0.994 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.210 -15.284 -11.883 25.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.183 1.183 7 C -0.560 4.560 8 H 0.089 0.911 9 C 0.082 3.918 10 N -0.259 5.259 11 C -0.086 4.086 12 C 0.004 3.996 13 N -0.334 5.334 14 C 0.352 3.648 15 O -0.458 6.458 16 C -0.149 4.149 17 C -0.087 4.087 18 C -0.142 4.142 19 C -0.091 4.091 20 C -0.076 4.076 21 C -0.115 4.115 22 C -0.142 4.142 23 C -0.130 4.130 24 C -0.157 4.157 25 C -0.038 4.038 26 C -0.001 4.001 27 C -0.077 4.077 28 H 0.073 0.927 29 H -0.026 1.026 30 H 0.025 0.975 31 H 0.028 0.972 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.161 0.839 36 H 0.184 0.816 37 H 0.186 0.814 38 H 0.183 0.817 39 H 0.172 0.828 40 H 0.153 0.847 41 H 0.120 0.880 42 H 0.115 0.885 43 H 0.121 0.879 44 H 0.024 0.976 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 16.061 -15.622 -11.329 25.107 hybrid contribution -1.517 0.796 -0.183 1.723 sum 14.544 -14.826 -11.512 23.745 Atomic orbital electron populations 1.70101 1.07956 1.27956 1.51768 1.25962 0.95697 1.03408 0.94731 0.85338 0.78672 0.77954 0.78410 1.19832 1.21145 1.18337 1.21450 0.93885 0.90563 1.50060 0.91054 1.19389 0.90093 0.88983 0.93359 1.62038 1.26954 1.02517 1.34371 1.22441 0.95612 0.90114 1.00439 1.21698 0.91419 0.98415 0.88102 1.48256 1.46414 1.08754 1.29982 1.18621 0.82026 0.82745 0.81422 1.90733 1.52369 1.33214 1.69494 1.19832 0.95715 1.06299 0.93083 1.21601 0.91109 0.94836 1.01151 1.21155 1.00684 1.00120 0.92280 1.21639 0.94652 0.94630 0.98213 1.18390 0.94258 1.01105 0.93840 1.21486 0.97661 0.96988 0.95392 1.21232 0.93265 0.99638 1.00093 1.21202 1.00926 0.98325 0.92527 1.21107 0.95952 1.00684 0.97999 1.18015 0.94549 0.98707 0.92548 1.22174 0.94798 0.80522 1.02605 1.22434 0.95505 1.00086 0.89683 0.92734 1.02635 0.97528 0.97188 0.89596 0.89204 0.88996 0.83867 0.81631 0.81389 0.81664 0.82756 0.84650 0.88045 0.88505 0.87894 0.97555 0.89218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.24 13.29 21.45 0.28 -55.96 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.97 43.12 29.54 68.60 2.03 45.14 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 7 C -0.52 -28.73 8.41 25.60 0.22 -28.51 16 8 H 0.07 3.75 7.13 -2.91 -0.02 3.73 16 9 C 0.21 11.06 4.72 85.56 0.40 11.46 16 10 N -0.53 -22.80 4.62 -898.88 -4.15 -26.95 16 11 C 0.04 1.62 5.62 86.38 0.49 2.10 16 12 C 0.13 3.99 6.61 86.35 0.57 4.56 16 13 N -0.60 -18.77 3.00 -820.87 -2.47 -21.23 16 14 C 0.56 18.39 6.46 86.68 0.56 18.95 16 15 O -0.58 -22.48 15.15 -4.03 -0.06 -22.54 16 16 C -0.15 -4.00 4.63 -19.86 -0.09 -4.09 16 17 C -0.07 -1.36 7.80 22.54 0.18 -1.18 16 18 C -0.12 -1.76 9.92 21.97 0.22 -1.54 16 19 C -0.07 -1.04 9.75 22.38 0.22 -0.82 16 20 C -0.08 -1.54 5.74 -21.31 -0.12 -1.66 16 21 C -0.10 -1.53 9.77 22.35 0.22 -1.31 16 22 C -0.12 -2.09 9.95 22.03 0.22 -1.87 16 23 C -0.11 -2.50 9.95 22.06 0.22 -2.28 16 24 C -0.14 -4.03 9.21 22.27 0.21 -3.83 16 25 C -0.04 -1.02 5.76 -21.12 -0.12 -1.14 16 26 C 0.12 3.46 5.71 86.50 0.49 3.95 16 27 C 0.05 1.96 5.47 86.54 0.47 2.43 16 28 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 29 H -0.04 -2.60 8.12 -2.39 -0.02 -2.62 16 30 H 0.01 0.38 7.97 -2.39 -0.02 0.36 16 31 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 32 H 0.09 3.12 7.99 -2.39 -0.02 3.10 16 33 H 0.09 2.86 7.04 -2.39 -0.02 2.85 16 34 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.14 2.39 7.73 -2.91 -0.02 2.37 16 36 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 37 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 38 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 39 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 40 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 41 H 0.10 3.44 6.40 -2.91 -0.02 3.42 16 42 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.10 2.56 5.54 -2.39 -0.01 2.54 16 44 H 0.01 0.25 8.14 -2.39 -0.02 0.24 16 45 H 0.09 3.52 6.67 -2.38 -0.02 3.50 16 Total: -1.00 -73.79 363.62 1.43 -72.37 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 0.99 Total: 13.51 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 4.80 Total: -4.34 kcal Atomic # 7 Polarization: -97.81 SS G_CDS: -6.33 Total: -104.14 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.06 Total: -22.54 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -73.79 1.43 -72.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027890584.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.727 kcal (2) G-P(sol) polarization free energy of solvation -73.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds