Wall clock time and date at job start Tue Mar 31 2020 05:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 116.99637 * 2 1 4 4 O 1.20821 * 120.00275 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99459 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.46916 * 179.97438 * 5 3 2 7 7 C 1.34777 * 119.99936 * 180.02562 * 6 5 3 8 8 O 1.21275 * 120.00389 * 359.97438 * 7 6 5 9 9 C 1.50709 * 119.99823 * 180.02562 * 7 6 5 10 10 C 1.53004 * 109.46816 * 179.97438 * 9 7 6 11 11 N 1.46905 * 109.46699 * 179.48980 * 10 9 7 12 12 C 1.46892 * 110.99931 * 287.84989 * 11 10 9 13 13 C 1.50695 * 109.47283 * 298.96822 * 12 11 10 14 14 H 1.07998 * 120.00055 * 4.75039 * 13 12 11 15 15 C 1.37883 * 120.00086 * 184.75223 * 13 12 11 16 16 N 1.31516 * 120.00147 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99913 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47013 * 90.00606 * 17 15 13 19 19 H 1.48503 * 109.47265 * 210.00278 * 17 15 13 20 20 H 1.48504 * 109.47094 * 330.00630 * 17 15 13 21 21 C 1.46901 * 110.99779 * 163.89790 * 11 10 9 22 22 C 1.50698 * 109.47202 * 190.00413 * 21 11 10 23 23 C 1.34512 * 125.79513 * 89.99695 * 22 21 11 24 24 C 1.41374 * 106.84221 * 180.02562 * 23 22 21 25 25 C 1.34518 * 106.84211 * 359.97438 * 24 23 22 26 26 O 1.34297 * 108.42038 * 359.74099 * 25 24 23 27 27 H 1.08996 * 109.47662 * 300.00450 * 1 2 3 28 28 H 1.09008 * 109.47165 * 60.00469 * 1 2 3 29 29 H 1.09004 * 109.47406 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47278 * 59.99906 * 5 3 2 31 31 H 1.09002 * 109.47021 * 299.99298 * 5 3 2 32 32 H 0.97000 * 120.00039 * 359.97438 * 6 5 3 33 33 H 1.08992 * 109.47081 * 59.99864 * 9 7 6 34 34 H 1.09002 * 109.46892 * 299.99432 * 9 7 6 35 35 H 1.08999 * 109.47089 * 59.49049 * 10 9 7 36 36 H 1.08995 * 109.47214 * 299.48718 * 10 9 7 37 37 H 1.09003 * 109.47521 * 58.96957 * 12 11 10 38 38 H 1.09007 * 109.46848 * 178.97030 * 12 11 10 39 39 H 0.96998 * 119.99735 * 179.97438 * 16 15 13 40 40 H 1.08996 * 109.47558 * 69.99842 * 21 11 10 41 41 H 1.09007 * 109.47113 * 310.00223 * 21 11 10 42 42 H 1.08001 * 126.57708 * 0.03572 * 23 22 21 43 43 H 1.08001 * 126.58091 * 179.97438 * 24 23 22 44 44 H 1.08001 * 125.78631 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 7 3.9816 2.6798 -0.0002 7 6 5.2920 2.9950 -0.0003 8 8 6.1273 2.1158 0.0006 9 6 5.7193 4.4403 -0.0005 10 6 7.2472 4.5203 0.0000 11 7 7.6637 5.9290 -0.0125 12 6 7.4108 6.5411 -1.3237 13 6 8.2048 5.8148 -2.3787 14 1 8.7739 4.9352 -2.1162 15 6 8.2049 6.2732 -3.6791 16 7 8.8974 5.6391 -4.5999 17 14 7.2201 7.7942 -4.1332 18 1 8.0699 9.0010 -3.9703 19 1 6.7727 7.6908 -5.5455 20 1 6.0347 7.8999 -3.2449 21 6 9.0762 6.0637 0.3677 22 6 9.4019 7.5193 0.5829 23 6 9.2977 8.1851 1.7470 24 6 9.7015 9.5163 1.4951 25 6 10.0289 9.5843 0.1922 26 8 9.8513 8.3704 -0.3540 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 3.9563 0.7805 -0.8891 31 1 3.9556 0.7810 0.8909 32 1 3.3136 3.3830 -0.0013 33 1 5.3296 4.9344 0.8894 34 1 5.3295 4.9342 -0.8906 35 1 7.6376 4.0181 -0.8852 36 1 7.6362 4.0344 0.8947 37 1 6.3484 6.4732 -1.5577 38 1 7.7113 7.5886 -1.2997 39 1 8.8971 5.9614 -5.5147 40 1 9.7062 5.6641 -0.4269 41 1 9.2588 5.5105 1.2891 42 1 8.9688 7.7803 2.6927 43 1 9.7398 10.3237 2.2114 44 1 10.3799 10.4647 -0.3256 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081517440.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:09 Heat of formation + Delta-G solvation = -92.545123 kcal Electronic energy + Delta-G solvation = -27130.752642 eV Core-core repulsion = 23050.793328 eV Total energy + Delta-G solvation = -4079.959313 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.99734 -40.95587 -39.49456 -37.17011 -36.88455 -34.55669 -32.58611 -32.39510 -31.60966 -29.84619 -29.05932 -27.54286 -26.87290 -24.54332 -23.24171 -21.55272 -21.18506 -20.76024 -20.01053 -19.33990 -18.07000 -17.55773 -17.08837 -17.05270 -16.58516 -16.34571 -15.72344 -15.51485 -15.42221 -14.64931 -14.37747 -14.35407 -13.99080 -13.85204 -13.57832 -13.20165 -12.94323 -12.46329 -12.43802 -12.41315 -12.29720 -12.29157 -11.96018 -11.54943 -11.32559 -11.23194 -10.98292 -10.94156 -10.73647 -10.52466 -10.34045 -9.91733 -9.74902 -9.52076 -9.41290 -9.25496 -8.57112 -8.00361 -7.31407 -6.09050 -4.08606 1.74706 2.08804 2.27182 2.79511 3.07001 3.25586 3.28903 3.35916 3.38770 3.59554 4.29847 4.40879 4.71808 4.79338 4.79987 5.00143 5.06551 5.13687 5.24060 5.24967 5.29872 5.47823 5.48058 5.56705 5.68794 5.88128 5.96246 6.07277 6.21384 6.22303 6.26809 6.37911 6.44418 6.63993 6.79353 6.87055 7.01648 7.07685 7.25422 7.44580 7.51710 7.74950 7.90371 7.95433 8.29053 8.43002 8.92277 9.53768 11.03749 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.013125 B = 0.002896 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.851882 B = 9665.964498 C =10848.890057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.460 3.540 4 O -0.503 6.503 5 C 0.128 3.872 6 N -0.732 5.732 7 C 0.525 3.475 8 O -0.534 6.534 9 C -0.128 4.128 10 C 0.073 3.927 11 N -0.532 5.532 12 C 0.150 3.850 13 C -0.549 4.549 14 H 0.077 0.923 15 C 0.077 3.923 16 N -0.896 5.896 17 Si 0.874 3.126 18 H -0.275 1.275 19 H -0.288 1.288 20 H -0.265 1.265 21 C 0.132 3.868 22 C 0.029 3.971 23 C -0.218 4.218 24 C -0.221 4.221 25 C -0.054 4.054 26 O -0.160 6.160 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.412 0.588 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.029 0.971 38 H 0.029 0.971 39 H 0.263 0.737 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.369 -4.665 12.266 17.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.270 6.270 3 C 0.302 3.698 4 O -0.391 6.391 5 C 0.003 3.997 6 N -0.391 5.391 7 C 0.313 3.687 8 O -0.410 6.410 9 C -0.168 4.168 10 C -0.055 4.055 11 N -0.256 5.256 12 C 0.023 3.977 13 C -0.587 4.587 14 H 0.095 0.905 15 C -0.126 4.126 16 N -0.534 5.534 17 Si 0.702 3.298 18 H -0.201 1.201 19 H -0.214 1.214 20 H -0.190 1.190 21 C 0.004 3.996 22 C -0.022 4.022 23 C -0.238 4.238 24 C -0.240 4.240 25 C -0.123 4.123 26 O -0.054 6.054 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.122 0.878 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.249 0.751 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.160 0.840 43 H 0.157 0.843 44 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -11.181 -4.858 12.116 17.188 hybrid contribution -0.693 1.030 -0.920 1.545 sum -11.874 -3.828 11.195 16.763 Atomic orbital electron populations 1.23331 0.75637 1.04000 1.02817 1.86490 1.23922 1.32700 1.83928 1.23685 0.92063 0.81731 0.72294 1.90683 1.66858 1.36277 1.45237 1.20591 0.86355 0.86364 1.06415 1.45882 1.08731 1.06616 1.77872 1.20956 0.80803 0.92455 0.74463 1.90709 1.51182 1.50515 1.48578 1.21555 0.99264 0.91004 1.05021 1.21662 0.92146 0.89409 1.02320 1.62447 1.16563 1.15119 1.31482 1.20260 0.96793 0.95332 0.85276 1.21578 1.30372 1.13718 0.93065 0.90502 1.24897 0.94752 0.96490 0.96436 1.69924 1.41039 1.40167 1.02297 0.86869 0.81218 0.84097 0.77658 1.20105 1.21402 1.18991 1.20413 0.91392 0.86386 1.01400 1.22433 0.99966 0.93302 0.86508 1.21433 1.09283 0.93983 0.99111 1.21701 1.07840 0.98030 0.96458 1.23927 1.06623 0.87694 0.94042 1.84204 1.64451 1.18282 1.38466 0.91680 0.91610 0.87777 0.86924 0.87044 0.75093 0.88626 0.88043 0.91398 0.91779 0.95343 0.95315 0.92718 0.91189 0.89451 0.84037 0.84261 0.79011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.29 16 2 O -0.35 -3.15 10.57 -39.26 -0.41 -3.57 16 3 C 0.46 4.69 8.03 36.00 0.29 4.98 16 4 O -0.50 -6.26 15.42 -18.75 -0.29 -6.55 16 5 C 0.13 1.29 6.27 -5.19 -0.03 1.26 16 6 N -0.73 -8.83 5.53 -61.47 -0.34 -9.17 16 7 C 0.53 7.95 7.83 -10.98 -0.09 7.86 16 8 O -0.53 -9.79 15.98 5.56 0.09 -9.70 16 9 C -0.13 -1.98 5.76 -27.88 -0.16 -2.14 16 10 C 0.07 1.34 4.09 -3.82 -0.02 1.33 16 11 N -0.53 -10.52 4.66 -237.52 -1.11 -11.63 16 12 C 0.15 3.50 3.86 -4.98 -0.02 3.48 16 13 C -0.55 -14.92 7.89 -34.44 -0.27 -15.19 16 14 H 0.08 2.27 6.20 -52.49 -0.33 1.95 16 15 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 16 N -0.90 -27.22 13.96 55.43 0.77 -26.44 16 17 Si 0.87 21.56 27.38 -169.99 -4.65 16.91 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.27 -6.26 6.68 56.52 0.38 -5.88 16 21 C 0.13 2.50 5.31 -4.98 -0.03 2.47 16 22 C 0.03 0.56 5.88 -35.63 -0.21 0.35 16 23 C -0.22 -3.59 10.81 -39.71 -0.43 -4.02 16 24 C -0.22 -3.35 10.91 -39.70 -0.43 -3.79 16 25 C -0.05 -0.88 12.09 29.42 0.36 -0.53 16 26 O -0.16 -3.26 9.98 5.70 0.06 -3.20 16 27 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 28 H 0.07 0.42 8.13 -51.92 -0.42 -0.01 16 29 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.41 4.57 7.44 -40.82 -0.30 4.27 16 33 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.10 1.65 6.74 -51.93 -0.35 1.30 16 35 H 0.07 1.50 6.10 -51.93 -0.32 1.18 16 36 H 0.06 1.09 7.77 -51.93 -0.40 0.68 16 37 H 0.03 0.66 6.05 -51.93 -0.31 0.35 16 38 H 0.03 0.71 5.84 -51.93 -0.30 0.41 16 39 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.07 1.51 6.59 -51.93 -0.34 1.17 16 41 H 0.09 1.39 7.86 -51.92 -0.41 0.98 16 42 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 43 H 0.14 1.69 8.06 -52.49 -0.42 1.26 16 44 H 0.19 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 371.00 15.07 5.59 5.59 Total: -1.00 -34.53 371.00 -6.39 -40.93 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -6.03 Total: 7.38 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -0.07 Total: -0.54 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: -0.67 Total: -47.24 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.56 Total: -23.02 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.65 Total: 16.91 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.53 -6.39 -40.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081517440.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.618 kcal (2) G-P(sol) polarization free energy of solvation -34.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds