Wall clock time and date at job start Tue Mar 31 2020 05:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42890 * 114.00216 * 2 1 4 4 C 1.53006 * 109.47364 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46559 * 64.99861 * 4 3 2 6 6 C 1.46502 * 119.99936 * 269.99869 * 5 4 3 7 7 C 1.50703 * 109.47412 * 270.00568 * 6 5 4 8 8 H 1.08000 * 120.00014 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00099 * 179.97438 * 7 6 5 10 10 N 1.31506 * 120.00059 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 119.99760 * 0.02562 * 9 7 6 12 12 H 1.48493 * 109.47426 * 89.99841 * 11 9 7 13 13 H 1.48500 * 109.46601 * 209.99791 * 11 9 7 14 14 H 1.48500 * 109.47222 * 329.99464 * 11 9 7 15 15 C 1.34771 * 119.99835 * 90.00708 * 5 4 3 16 16 O 1.21287 * 119.99435 * 179.97438 * 15 5 4 17 17 C 1.50693 * 120.00299 * 359.97438 * 15 5 4 18 18 C 1.53000 * 109.47435 * 180.02562 * 17 15 5 19 19 N 1.46493 * 109.47245 * 180.02562 * 18 17 15 20 20 C 1.34778 * 119.99793 * 179.97438 * 19 18 17 21 21 O 1.21695 * 120.00192 * 359.97438 * 20 19 18 22 22 C 1.46661 * 119.99796 * 179.97438 * 20 19 18 23 23 C 1.36547 * 125.98711 * 179.97438 * 22 20 19 24 24 C 1.40360 * 106.70833 * 180.02562 * 23 22 20 25 25 C 1.35131 * 107.11647 * 359.97438 * 24 23 22 26 26 O 1.33934 * 108.76477 * 0.02562 * 25 24 23 27 27 H 1.08994 * 109.47890 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46905 * 300.00565 * 1 2 3 29 29 H 1.09000 * 109.46874 * 59.99572 * 1 2 3 30 30 H 1.09003 * 109.47257 * 59.99923 * 3 2 1 31 31 H 1.09001 * 109.47150 * 299.99754 * 3 2 1 32 32 H 1.09003 * 109.46648 * 305.00256 * 4 3 2 33 33 H 1.08996 * 109.47327 * 184.99780 * 4 3 2 34 34 H 1.09002 * 109.46982 * 30.00518 * 6 5 4 35 35 H 1.08999 * 109.46816 * 150.00057 * 6 5 4 36 36 H 0.97004 * 120.00557 * 180.02562 * 10 9 7 37 37 H 1.08997 * 109.47542 * 59.99831 * 17 15 5 38 38 H 1.09001 * 109.46974 * 300.00200 * 17 15 5 39 39 H 1.08997 * 109.47315 * 59.99176 * 18 17 15 40 40 H 1.09001 * 109.46782 * 299.99802 * 18 17 15 41 41 H 0.96998 * 120.00266 * 359.97438 * 19 18 17 42 42 H 1.08005 * 126.64485 * 0.02562 * 23 22 20 43 43 H 1.08003 * 126.44294 * 180.02562 * 24 23 22 44 44 H 1.07997 * 125.61851 * 180.26772 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9766 0.5638 -1.2509 6 6 4.1062 -0.8928 -1.3403 7 6 5.5016 -1.2985 -0.9412 8 1 6.2200 -0.5466 -0.6497 9 6 5.8609 -2.6296 -0.9472 10 7 7.0787 -2.9836 -0.5994 11 14 4.6181 -3.9301 -1.4507 12 1 4.7045 -4.1566 -2.9157 13 1 4.9114 -5.1982 -0.7357 14 1 3.2503 -3.4696 -1.1008 15 6 4.2634 1.3327 -2.3200 16 8 4.6290 0.8188 -3.3560 17 6 4.1297 2.8309 -2.2282 18 6 4.5121 3.4602 -3.5693 19 7 4.3828 4.9167 -3.4799 20 6 4.6697 5.6856 -4.5490 21 8 5.0366 5.1700 -5.5885 22 6 4.5396 7.1437 -4.4596 23 6 4.7971 8.0351 -5.4614 24 6 4.5424 9.3130 -4.9398 25 6 4.1451 9.1478 -3.6588 26 8 4.1449 7.8393 -3.3731 27 1 -0.3635 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8508 0.5683 0.8427 33 1 3.9785 2.1764 0.0902 34 1 3.3857 -1.3633 -0.6713 35 1 3.9137 -1.2124 -2.3644 36 1 7.3317 -3.9200 -0.6039 37 1 4.7911 3.2076 -1.4480 38 1 3.0988 3.0896 -1.9867 39 1 3.8505 3.0835 -4.3493 40 1 5.5430 3.2016 -3.8112 41 1 4.0907 5.3277 -2.6513 42 1 5.1318 7.8020 -6.4615 43 1 4.6439 10.2519 -5.4639 44 1 3.8691 9.9400 -2.9787 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103214642.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:24 Heat of formation + Delta-G solvation = -93.333987 kcal Electronic energy + Delta-G solvation = -27087.931512 eV Core-core repulsion = 23007.937991 eV Total energy + Delta-G solvation = -4079.993521 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.00068 -39.79192 -39.17709 -37.67129 -35.46376 -34.92496 -33.41640 -32.63448 -31.42008 -30.06692 -29.65546 -27.66014 -26.11072 -24.83516 -22.95851 -22.73573 -22.09373 -21.60788 -20.64143 -19.03416 -18.22631 -17.06234 -16.91985 -16.69201 -16.60824 -16.21101 -15.92797 -15.68035 -15.32733 -15.14462 -14.82569 -14.36246 -14.24987 -13.96665 -13.42817 -13.34529 -13.23221 -13.02157 -12.91345 -12.59011 -12.14062 -12.06634 -11.82110 -11.80221 -11.54973 -11.37504 -10.99480 -10.82118 -10.52592 -10.41919 -10.38459 -10.06958 -9.59987 -9.48454 -9.35773 -9.08179 -8.97916 -8.51290 -7.72220 -6.02188 -4.00083 0.75939 2.01560 2.34412 2.93366 2.97280 3.25022 3.36346 3.42378 3.46182 3.79509 3.91212 4.34680 4.47531 4.54951 4.64739 4.82607 4.90828 5.02095 5.16439 5.23025 5.28266 5.32224 5.34307 5.41630 5.41847 5.43584 5.48414 5.53930 5.60666 5.71310 5.90330 5.95416 5.99146 6.12678 6.17545 6.47441 6.89844 7.06236 7.23815 7.25738 7.35451 7.69914 7.88060 8.24035 8.52390 8.90735 9.00990 9.58883 11.11228 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.015343 B = 0.002681 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.456879 B =10440.393427 C =11604.714239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.375 6.375 3 C 0.043 3.957 4 C 0.111 3.889 5 N -0.583 5.583 6 C 0.219 3.781 7 C -0.527 4.527 8 H 0.073 0.927 9 C 0.072 3.928 10 N -0.900 5.900 11 Si 0.874 3.126 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.262 1.262 15 C 0.510 3.490 16 O -0.534 6.534 17 C -0.155 4.155 18 C 0.133 3.867 19 N -0.719 5.719 20 C 0.600 3.400 21 O -0.514 6.514 22 C -0.076 4.076 23 C -0.122 4.122 24 C -0.225 4.225 25 C -0.009 4.009 26 O -0.165 6.165 27 H 0.083 0.917 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.043 0.957 35 H 0.033 0.967 36 H 0.264 0.736 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.403 0.597 42 H 0.161 0.839 43 H 0.157 0.843 44 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.533 24.305 0.516 27.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.293 6.293 3 C -0.035 4.035 4 C -0.014 4.014 5 N -0.314 5.314 6 C 0.099 3.901 7 C -0.566 4.566 8 H 0.091 0.909 9 C -0.130 4.130 10 N -0.539 5.539 11 Si 0.701 3.299 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.186 1.186 15 C 0.295 3.705 16 O -0.411 6.411 17 C -0.195 4.195 18 C 0.010 3.990 19 N -0.370 5.370 20 C 0.385 3.615 21 O -0.391 6.391 22 C -0.128 4.128 23 C -0.143 4.143 24 C -0.244 4.244 25 C -0.079 4.079 26 O -0.060 6.060 27 H 0.102 0.898 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.116 0.884 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.238 0.762 42 H 0.179 0.821 43 H 0.174 0.826 44 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -11.919 23.098 -0.474 25.996 hybrid contribution -0.868 -0.006 0.225 0.897 sum -12.787 23.092 -0.249 26.397 Atomic orbital electron populations 1.22711 0.81880 1.02617 0.99316 1.88067 1.18881 1.27179 1.95183 1.23146 0.95282 0.85389 0.99706 1.21567 0.91062 0.99351 0.89423 1.47831 1.64488 1.08994 1.10104 1.19701 0.97715 0.74755 0.97946 1.21351 0.96161 0.93526 1.45540 0.90912 1.24828 0.95159 0.98374 0.94627 1.69896 1.18187 1.17238 1.48561 0.86869 0.82476 0.81329 0.79245 1.20041 1.21229 1.18646 1.19987 0.78462 0.87837 0.84195 1.90720 1.46200 1.74839 1.29374 1.21893 1.03645 0.95114 0.98879 1.21179 1.04017 0.76676 0.97115 1.45920 1.68383 1.08066 1.14623 1.16518 0.78129 0.82659 0.84151 1.90932 1.46796 1.72136 1.29200 1.22170 1.10733 0.92850 0.87013 1.22018 1.00505 0.91415 1.00358 1.21884 1.07767 0.99072 0.95691 1.24417 1.02590 0.83047 0.97851 1.84056 1.66519 1.18540 1.36897 0.89830 0.94472 0.94491 0.92783 0.93639 0.88625 0.89677 0.93881 0.94921 0.92665 0.88449 0.89016 0.90045 0.89738 0.76204 0.82148 0.82576 0.77317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.47 16 2 O -0.37 -5.78 9.53 -35.23 -0.34 -6.11 16 3 C 0.04 0.53 6.28 37.16 0.23 0.76 16 4 C 0.11 1.61 5.62 -4.04 -0.02 1.58 16 5 N -0.58 -11.59 2.42 -175.05 -0.42 -12.01 16 6 C 0.22 5.43 4.05 -5.19 -0.02 5.41 16 7 C -0.53 -15.27 9.94 -34.44 -0.34 -15.61 16 8 H 0.07 2.29 8.06 -52.49 -0.42 1.86 16 9 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 10 N -0.90 -28.16 13.96 55.43 0.77 -27.39 16 11 Si 0.87 22.16 27.47 -169.99 -4.67 17.49 16 12 H -0.27 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 15 C 0.51 9.84 7.67 -10.99 -0.08 9.75 16 16 O -0.53 -12.92 15.56 5.55 0.09 -12.83 16 17 C -0.15 -1.95 4.37 -27.89 -0.12 -2.08 16 18 C 0.13 1.84 4.96 -4.05 -0.02 1.82 16 19 N -0.72 -8.04 5.55 -61.63 -0.34 -8.38 16 20 C 0.60 7.92 7.79 -12.86 -0.10 7.82 16 21 O -0.51 -8.74 16.86 5.19 0.09 -8.65 16 22 C -0.08 -0.82 7.13 -36.79 -0.26 -1.08 16 23 C -0.12 -1.19 10.62 -39.39 -0.42 -1.61 16 24 C -0.23 -1.57 10.87 -39.89 -0.43 -2.00 16 25 C -0.01 -0.06 12.08 29.63 0.36 0.30 16 26 O -0.16 -1.43 10.40 5.00 0.05 -1.38 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.51 7.30 -51.93 -0.38 0.13 16 32 H 0.10 1.53 8.07 -51.93 -0.42 1.11 16 33 H 0.09 0.92 6.44 -51.93 -0.33 0.58 16 34 H 0.04 1.06 6.17 -51.93 -0.32 0.74 16 35 H 0.03 0.88 6.85 -51.93 -0.36 0.52 16 36 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 37 H 0.10 1.02 7.40 -51.93 -0.38 0.64 16 38 H 0.09 0.88 7.26 -51.93 -0.38 0.50 16 39 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 40 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 41 H 0.40 3.26 8.23 -40.82 -0.34 2.93 16 42 H 0.16 1.48 8.06 -52.48 -0.42 1.06 16 43 H 0.16 0.69 8.06 -52.48 -0.42 0.26 16 44 H 0.21 0.36 8.06 -52.49 -0.42 -0.06 16 LS Contribution 377.38 15.07 5.69 5.69 Total: -1.00 -38.81 377.38 -5.60 -44.41 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.30 Total: 0.59 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -0.22 Total: 8.58 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.01 Total: -47.78 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.11 Total: -28.98 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.49 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.81 -5.60 -44.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103214642.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.920 kcal (2) G-P(sol) polarization free energy of solvation -38.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds