Wall clock time and date at job start Tue Mar 31 2020 05:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00407 * 2 1 4 4 C 1.53003 * 109.47512 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.47566 * 174.99605 * 4 3 2 6 6 C 1.53007 * 109.46625 * 55.00226 * 4 3 2 7 7 O 1.42905 * 109.46824 * 304.99894 * 6 4 3 8 8 N 1.46492 * 109.47394 * 295.00206 * 4 3 2 9 9 C 1.34777 * 120.00434 * 204.99592 * 8 4 3 10 10 O 1.21591 * 119.99393 * 0.02562 * 9 8 4 11 11 N 1.34768 * 120.00297 * 179.97438 * 9 8 4 12 12 C 1.46503 * 120.00179 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.47448 * 180.02562 * 12 11 9 14 14 C 1.38299 * 119.93217 * 269.73027 * 13 12 11 15 15 C 1.38093 * 120.06953 * 179.72477 * 14 13 12 16 16 C 1.38883 * 119.92808 * 0.56550 * 15 14 13 17 17 O 1.35754 * 120.06438 * 179.68623 * 16 15 14 18 18 C 1.34826 * 116.99724 * 174.49160 * 17 16 15 19 19 H 1.07998 * 120.00100 * 5.04739 * 18 17 16 20 20 C 1.38654 * 119.99970 * 185.05457 * 18 17 16 21 21 N 1.31557 * 120.00012 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99959 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46896 * 90.00233 * 22 20 18 24 24 H 1.48505 * 109.47024 * 209.99798 * 22 20 18 25 25 H 1.48496 * 109.47185 * 330.00029 * 22 20 18 26 26 C 1.38871 * 119.86468 * 359.70509 * 16 15 14 27 27 C 1.38101 * 119.93230 * 0.02562 * 26 16 15 28 28 H 1.09000 * 109.47018 * 300.00823 * 1 2 3 29 29 H 1.09002 * 109.46759 * 59.99821 * 1 2 3 30 30 H 1.09000 * 109.47470 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47570 * 59.99841 * 3 2 1 32 32 H 1.08998 * 109.47286 * 299.99726 * 3 2 1 33 33 H 1.08993 * 109.47596 * 65.00179 * 6 4 3 34 34 H 1.09001 * 109.46530 * 185.00527 * 6 4 3 35 35 H 0.96697 * 113.99861 * 180.02562 * 7 6 4 36 36 H 0.97007 * 119.99685 * 24.99620 * 8 4 3 37 37 H 0.97000 * 120.00448 * 0.02562 * 11 9 8 38 38 H 1.09002 * 109.46848 * 59.99850 * 12 11 9 39 39 H 1.09001 * 109.46885 * 300.00464 * 12 11 9 40 40 H 1.08005 * 119.96050 * 359.97425 * 14 13 12 41 41 H 1.07999 * 120.03730 * 180.26989 * 15 14 13 42 42 H 0.97002 * 120.00021 * 179.97438 * 21 20 18 43 43 H 1.08002 * 120.03853 * 179.97438 * 26 16 15 44 44 H 1.07997 * 119.96732 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.9787 2.1763 -0.0890 6 6 3.9790 0.3192 -1.1808 7 8 3.3075 -0.9410 -1.1266 8 7 3.9758 0.5643 1.2526 9 6 5.2196 0.7943 1.7178 10 8 5.9762 1.5171 1.0984 11 7 5.6244 0.2241 2.8699 12 6 6.9763 0.4746 3.3758 13 6 7.1759 -0.2744 4.6681 14 6 6.8680 0.3325 5.8721 15 6 7.0445 -0.3533 7.0577 16 6 7.5428 -1.6495 7.0408 17 8 7.7234 -2.3239 8.2051 18 6 8.1010 -3.6148 8.1124 19 1 8.3252 -4.0439 7.1470 20 6 8.2015 -4.3916 9.2565 21 7 7.9289 -3.8689 10.4326 22 14 8.7241 -6.1805 9.1280 23 1 10.2023 -6.2732 9.2352 24 1 8.0983 -6.9591 10.2269 25 1 8.2871 -6.7311 7.8200 26 6 7.8564 -2.2541 5.8306 27 6 7.6724 -1.5651 4.6480 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6887 1.8464 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.7301 0.8237 -2.1143 34 1 5.0560 0.1595 -1.1299 35 1 3.5412 -1.5425 -1.8468 36 1 3.3720 -0.0120 1.7469 37 1 5.0207 -0.3522 3.3642 38 1 7.1067 1.5426 3.5505 39 1 7.7075 0.1345 2.6424 40 1 6.4853 1.3424 5.8848 41 1 6.7997 0.1196 7.9973 42 1 7.9988 -4.4124 11.2329 43 1 8.2445 -3.2619 5.8143 44 1 7.9165 -2.0346 3.7066 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279836180.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:59 Heat of formation + Delta-G solvation = -122.666338 kcal Electronic energy + Delta-G solvation = -26577.065598 eV Core-core repulsion = 22495.800131 eV Total energy + Delta-G solvation = -4081.265467 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.16272 -39.12825 -38.36418 -36.94104 -36.61553 -34.60747 -34.24392 -32.36432 -30.88761 -30.24888 -29.28459 -27.15709 -25.83890 -25.54352 -24.62084 -22.03455 -21.73015 -20.60216 -20.54696 -18.61146 -18.05040 -17.53083 -17.10957 -16.82468 -16.41162 -15.81760 -15.50086 -15.16516 -14.76543 -14.64825 -14.49567 -14.36260 -14.03139 -13.85151 -13.67433 -13.35776 -13.18833 -12.77813 -12.76763 -12.68110 -12.29921 -12.03103 -11.67201 -11.67059 -11.37544 -11.26094 -10.94978 -10.77113 -10.66321 -10.48062 -10.27392 -10.01452 -9.85504 -9.41138 -9.24891 -8.90131 -8.71113 -8.26325 -7.31311 -6.51851 -4.10669 2.05042 2.15201 2.85496 3.09768 3.10573 3.15292 3.25840 3.52151 3.91522 4.12747 4.28425 4.50321 4.61439 4.79263 4.96180 5.03256 5.08693 5.11217 5.16426 5.18082 5.20118 5.26525 5.41022 5.45924 5.47419 5.57766 5.69460 5.84611 5.96103 6.14130 6.37437 6.42499 6.60859 6.65432 6.82433 6.90090 6.95045 7.05069 7.18322 7.30164 7.36895 7.54920 7.73522 7.92995 8.11707 8.67450 8.93595 9.61983 10.65717 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.017167 B = 0.002150 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.631685 B =13017.510335 C =13595.454874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.054 3.946 4 C 0.171 3.829 5 H 0.111 0.889 6 C 0.066 3.934 7 O -0.544 6.544 8 N -0.734 5.734 9 C 0.702 3.298 10 O -0.603 6.603 11 N -0.737 5.737 12 C 0.198 3.802 13 C -0.214 4.214 14 C -0.054 4.054 15 C -0.196 4.196 16 C 0.160 3.840 17 O -0.174 6.174 18 C -0.393 4.393 19 H 0.093 0.907 20 C 0.040 3.960 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.237 4.237 27 C -0.050 4.050 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.367 0.633 36 H 0.403 0.597 37 H 0.398 0.602 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.112 0.888 41 H 0.118 0.882 42 H 0.271 0.729 43 H 0.128 0.872 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.978 7.750 -20.773 25.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.274 6.274 3 C -0.023 4.023 4 C 0.065 3.935 5 H 0.129 0.871 6 C -0.014 4.014 7 O -0.347 6.347 8 N -0.390 5.390 9 C 0.402 3.598 10 O -0.483 6.483 11 N -0.392 5.392 12 C 0.076 3.924 13 C -0.215 4.215 14 C -0.072 4.072 15 C -0.215 4.215 16 C 0.106 3.894 17 O -0.076 6.076 18 C -0.469 4.469 19 H 0.111 0.889 20 C -0.165 4.165 21 N -0.494 5.494 22 Si 0.766 3.234 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.256 4.256 27 C -0.069 4.069 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.212 0.788 36 H 0.238 0.762 37 H 0.232 0.768 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.130 0.870 41 H 0.136 0.864 42 H 0.081 0.919 43 H 0.146 0.854 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.434 8.514 -20.288 24.796 hybrid contribution -0.215 -1.458 -0.126 1.479 sum -11.648 7.056 -20.414 24.540 Atomic orbital electron populations 1.22736 0.82000 1.02661 0.99411 1.88183 1.18384 1.25669 1.95125 1.22745 0.92538 0.86302 1.00747 1.20977 0.92292 0.96988 0.83273 0.87103 1.22524 0.96189 0.85921 0.96776 1.86726 1.68872 1.26195 1.52873 1.44996 1.14293 1.54030 1.25713 1.16045 0.81927 0.80574 0.81276 1.90889 1.54287 1.42908 1.60230 1.45492 1.16985 1.52751 1.23926 1.19818 0.81629 0.98723 0.92266 1.19232 1.12395 0.96433 0.93441 1.20533 0.97235 0.98171 0.91309 1.20214 1.08886 0.94139 0.98274 1.19440 0.91591 0.91837 0.86564 1.83978 1.73915 1.24565 1.25179 1.21354 1.46596 0.83587 0.95373 0.88927 1.25318 0.96742 1.00198 0.94229 1.70037 1.44461 1.36954 0.97972 0.85695 0.78905 0.80209 0.78542 1.19808 1.20197 1.19128 1.21158 1.10294 1.02126 0.92054 1.20652 0.96015 0.93203 0.96984 0.94510 0.94546 0.89696 0.92785 0.92209 0.93545 0.93147 0.78761 0.76249 0.76809 0.91774 0.91857 0.86961 0.86404 0.91900 0.85439 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.36 -3.27 8.00 -58.58 -0.47 -3.74 16 3 C 0.05 0.42 5.68 37.16 0.21 0.63 16 4 C 0.17 1.61 2.86 -67.93 -0.19 1.41 16 5 H 0.11 1.06 7.58 -51.93 -0.39 0.67 16 6 C 0.07 0.60 6.85 37.16 0.25 0.85 16 7 O -0.54 -5.18 11.17 -58.58 -0.65 -5.83 16 8 N -0.73 -8.04 5.01 -58.68 -0.29 -8.33 16 9 C 0.70 9.73 8.53 -86.93 -0.74 8.98 16 10 O -0.60 -10.29 16.01 5.29 0.08 -10.21 16 11 N -0.74 -9.72 5.55 -66.41 -0.37 -10.09 16 12 C 0.20 2.87 5.80 -5.19 -0.03 2.84 16 13 C -0.21 -3.48 5.25 -104.57 -0.55 -4.02 16 14 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 15 C -0.20 -3.97 9.99 -39.40 -0.39 -4.36 16 16 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16 17 O -0.17 -4.84 9.76 0.05 0.00 -4.84 16 18 C -0.39 -10.74 9.49 30.89 0.29 -10.45 16 19 H 0.09 2.34 5.20 -52.49 -0.27 2.06 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -24.78 13.67 55.48 0.76 -24.02 16 22 Si 0.94 20.13 29.55 -169.99 -5.02 15.11 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 26 C -0.24 -4.96 9.17 -39.40 -0.36 -5.32 16 27 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 28 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.37 2.17 9.12 45.56 0.42 2.59 16 36 H 0.40 4.08 8.40 -40.82 -0.34 3.74 16 37 H 0.40 4.78 8.48 -40.82 -0.35 4.43 16 38 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 39 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 40 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 41 H 0.12 2.32 8.06 -52.49 -0.42 1.89 16 42 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.13 2.69 5.64 -52.49 -0.30 2.39 16 44 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 376.24 15.07 5.67 5.67 Total: -1.00 -33.35 376.24 -7.26 -40.60 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -5.44 Total: 11.89 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -1.52 Total: -6.22 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.10 Total: -42.44 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -1.04 Total: -24.62 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.35 -7.26 -40.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279836180.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.062 kcal (2) G-P(sol) polarization free energy of solvation -33.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds