Wall clock time and date at job start Tue Mar 31 2020 06:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 110.57252 * 2 1 4 4 C 1.51555 * 110.64253 * 122.93826 * 2 1 3 5 5 O 1.34285 * 126.90043 * 298.43514 * 4 2 1 6 6 N 1.30523 * 106.19248 * 118.46561 * 4 2 1 7 7 C 1.33883 * 112.54235 * 0.02562 * 6 4 2 8 8 O 1.21688 * 123.96124 * 179.97438 * 7 6 4 9 9 N 1.35073 * 112.12641 * 0.08525 * 7 6 4 10 10 C 1.46503 * 127.28565 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.46843 * 269.92270 * 10 9 7 12 12 O 1.21283 * 120.00405 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99839 * 180.02562 * 11 10 9 14 14 C 1.46963 * 120.59143 * 359.71621 * 13 11 10 15 15 C 1.53810 * 108.39635 * 124.76354 * 14 13 11 16 16 N 1.46963 * 108.58119 * 49.63387 * 15 14 13 17 17 C 1.36941 * 120.59115 * 124.62578 * 16 15 14 18 18 H 1.08001 * 119.99773 * 208.22621 * 17 16 15 19 19 C 1.38813 * 120.00349 * 28.23020 * 17 16 15 20 20 N 1.31616 * 119.99734 * 17.58139 * 19 17 16 21 21 Si 1.86794 * 120.00148 * 197.58203 * 19 17 16 22 22 H 1.48499 * 109.47181 * 89.99841 * 21 19 17 23 23 H 1.48501 * 109.47425 * 209.99603 * 21 19 17 24 24 H 1.48497 * 109.47316 * 330.00152 * 21 19 17 25 25 C 1.46958 * 118.81482 * 304.64840 * 16 15 14 26 26 C 1.46963 * 120.59360 * 179.97438 * 13 11 10 27 27 H 1.08995 * 109.47611 * 60.69661 * 1 2 3 28 28 H 1.08998 * 109.47425 * 180.70447 * 1 2 3 29 29 H 1.09008 * 109.46882 * 300.69955 * 1 2 3 30 30 H 1.08993 * 109.46963 * 59.30417 * 3 2 1 31 31 H 1.09000 * 109.47189 * 179.30160 * 3 2 1 32 32 H 1.09004 * 109.47292 * 299.30131 * 3 2 1 33 33 H 0.96695 * 116.99579 * 180.02562 * 5 4 2 34 34 H 1.08995 * 109.46907 * 29.91528 * 10 9 7 35 35 H 1.08990 * 109.47032 * 149.92192 * 10 9 7 36 36 H 1.09005 * 109.60989 * 244.54340 * 14 13 11 37 37 H 1.09000 * 109.61140 * 5.05573 * 14 13 11 38 38 H 1.08997 * 109.73848 * 289.84391 * 15 14 13 39 39 H 1.09001 * 109.67506 * 169.38244 * 15 14 13 40 40 H 0.97001 * 120.00206 * 180.02562 * 20 19 17 41 41 H 1.09000 * 109.61307 * 295.48161 * 25 16 15 42 42 H 1.09000 * 109.75548 * 175.05271 * 25 16 15 43 43 H 1.09001 * 109.60956 * 354.95078 * 26 13 11 44 44 H 1.09009 * 109.60742 * 115.28365 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0676 1.4324 0.0000 4 6 2.0642 -0.7712 1.1903 5 8 1.8700 -0.4869 2.4882 6 7 2.7516 -1.7666 0.7002 7 6 2.7576 -1.7765 -0.6386 8 8 3.3346 -2.6116 -1.3097 9 7 2.0502 -0.7497 -1.1580 10 6 1.8396 -0.4442 -2.5753 11 6 2.9364 0.4680 -3.0608 12 8 3.8079 0.8281 -2.2981 13 7 2.9483 0.8847 -4.3425 14 6 1.9017 0.4524 -5.2793 15 6 1.2508 1.7044 -5.8913 16 7 2.3141 2.5942 -6.3787 17 6 2.3267 3.0168 -7.6813 18 1 3.2632 3.2606 -8.1608 19 6 1.1358 3.1318 -8.3852 20 7 -0.0093 3.1774 -7.7381 21 14 1.1586 3.2218 -10.2509 22 1 1.0704 1.8505 -10.8137 23 1 0.0021 4.0255 -10.7219 24 1 2.4215 3.8609 -10.7002 25 6 3.3638 3.0220 -5.4435 26 6 4.0113 1.7749 -4.8298 27 1 -0.3634 0.5029 -0.8961 28 1 -0.3634 -1.0275 0.0126 29 1 -0.3633 0.5247 0.8837 30 1 1.7041 1.9569 0.8836 31 1 3.1573 1.4115 0.0125 32 1 1.7244 1.9494 -0.8962 33 1 2.2802 -1.0789 3.1334 34 1 1.8542 -1.3689 -3.1522 35 1 0.8753 0.0477 -2.7015 36 1 2.3450 -0.1554 -6.0680 37 1 1.1499 -0.1286 -4.7451 38 1 0.6607 2.2203 -5.1339 39 1 0.6071 1.4146 -6.7218 40 1 -0.8416 3.2574 -8.2300 41 1 2.9243 3.6317 -4.6541 42 1 4.1180 3.6014 -5.9761 43 1 4.6531 2.0674 -3.9987 44 1 4.6036 1.2581 -5.5851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000329910155.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:00 Heat of formation + Delta-G solvation = -43.721705 kcal Electronic energy + Delta-G solvation = -28888.479456 eV Core-core repulsion = 24842.930036 eV Total energy + Delta-G solvation = -4045.549420 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.14713 -40.99065 -39.52906 -38.46543 -37.84225 -35.61721 -35.22692 -33.66346 -33.04874 -31.86575 -29.47333 -28.48392 -28.09291 -25.63039 -25.42541 -24.44289 -22.72003 -22.32575 -21.53346 -20.29402 -19.44131 -18.92573 -17.90419 -17.61318 -17.25598 -17.05268 -16.80861 -16.47857 -15.93924 -15.71787 -15.46091 -15.28252 -15.25142 -15.22073 -14.98123 -14.63630 -14.27668 -14.21371 -13.69235 -13.47409 -13.33406 -13.20356 -13.13983 -12.87744 -12.67330 -12.60535 -12.49656 -12.23190 -12.01473 -11.89807 -11.78589 -11.66539 -11.30296 -11.14603 -11.03643 -10.58044 -10.05417 -9.84674 -8.64485 -7.88220 -5.35061 -0.21196 1.15757 1.49044 1.52298 1.54209 1.59398 1.62890 2.05345 2.34024 2.52380 2.83526 3.26529 3.42718 3.48523 3.60377 3.73497 3.81984 3.99243 4.15358 4.22766 4.25173 4.37119 4.47198 4.57325 4.58804 4.65609 4.67212 4.71903 4.72991 4.81028 5.00783 5.06015 5.09612 5.17963 5.22845 5.32358 5.54692 5.62129 5.67671 6.06133 6.37192 6.42945 6.54546 6.96181 7.10562 7.13293 7.80106 8.32742 9.16676 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.025476 B = 0.003041 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.802251 B = 9204.282491 C = 9391.814685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.149 3.851 3 C -0.132 4.132 4 C 0.443 3.557 5 O -0.402 6.402 6 N -0.627 5.627 7 C 0.659 3.341 8 O -0.578 6.578 9 N -0.618 5.618 10 C 0.132 3.868 11 C 0.490 3.510 12 O -0.574 6.574 13 N -0.598 5.598 14 C 0.091 3.909 15 C 0.164 3.836 16 N -0.609 5.609 17 C -0.266 4.266 18 H 0.064 0.936 19 C -0.040 4.040 20 N -0.927 5.927 21 Si 0.964 3.036 22 H -0.284 1.284 23 H -0.295 1.295 24 H -0.274 1.274 25 C 0.137 3.863 26 C 0.107 3.893 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.449 0.551 34 H 0.122 0.878 35 H 0.149 0.851 36 H 0.066 0.934 37 H 0.111 0.889 38 H 0.011 0.989 39 H 0.076 0.924 40 H 0.253 0.747 41 H 0.015 0.985 42 H 0.068 0.932 43 H 0.083 0.917 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.508 -5.135 19.354 20.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.061 3.939 3 C -0.190 4.190 4 C 0.225 3.775 5 O -0.198 6.198 6 N -0.382 5.382 7 C 0.361 3.639 8 O -0.455 6.455 9 N -0.357 5.357 10 C 0.006 3.994 11 C 0.278 3.722 12 O -0.454 6.454 13 N -0.331 5.331 14 C -0.033 4.033 15 C 0.038 3.962 16 N -0.332 5.332 17 C -0.396 4.396 18 H 0.082 0.918 19 C -0.237 4.237 20 N -0.573 5.573 21 Si 0.793 3.207 22 H -0.210 1.210 23 H -0.222 1.222 24 H -0.199 1.199 25 C 0.011 3.989 26 C -0.018 4.018 27 H 0.108 0.892 28 H 0.089 0.911 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.313 0.687 34 H 0.140 0.860 35 H 0.167 0.833 36 H 0.084 0.916 37 H 0.129 0.871 38 H 0.029 0.971 39 H 0.094 0.906 40 H 0.062 0.938 41 H 0.033 0.967 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.730 -5.597 19.338 20.316 hybrid contribution 0.284 0.224 -1.369 1.416 sum -2.447 -5.373 17.969 18.914 Atomic orbital electron populations 1.22083 0.86638 1.04494 1.06566 1.21066 0.98597 0.92896 0.81367 1.21931 1.01146 0.90960 1.04955 1.23927 0.80852 0.85461 0.87268 1.84344 1.70434 1.55371 1.09655 1.70538 1.29721 1.27595 1.10350 1.18317 0.78680 0.81665 0.85261 1.90836 1.47958 1.42536 1.64216 1.48941 1.53019 1.27981 1.05764 1.21263 0.98526 1.00612 0.78954 1.21544 0.87588 0.81490 0.81566 1.90631 1.40227 1.59196 1.55303 1.48119 1.27704 1.47666 1.09616 1.22665 0.89993 0.98060 0.92538 1.21124 0.89820 0.88247 0.97058 1.44238 1.27993 1.53752 1.07265 1.19464 0.92279 1.40072 0.87807 0.91792 1.25685 0.95539 1.00422 1.02018 1.70123 0.97470 1.54370 1.35319 0.85325 0.76912 0.77460 0.81035 1.21036 1.22204 1.19925 1.21286 0.91737 0.93701 0.92216 1.21974 0.89618 0.91694 0.98482 0.89161 0.91144 0.86811 0.87004 0.93534 0.91272 0.68684 0.86042 0.83314 0.91566 0.87093 0.97055 0.90607 0.93812 0.96678 0.91329 0.89906 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.79 71.98 0.63 -0.78 16 2 C 0.15 2.66 1.14 2.95 0.00 2.66 16 3 C -0.13 -2.40 7.66 71.98 0.55 -1.85 16 4 C 0.44 7.57 7.65 88.58 0.68 8.24 16 5 O -0.40 -2.74 13.46 -75.56 -1.02 -3.76 16 6 N -0.63 -17.08 11.01 -431.13 -4.75 -21.82 16 7 C 0.66 22.23 8.73 179.24 1.56 23.79 16 8 O -0.58 -24.87 17.80 -4.31 -0.08 -24.94 16 9 N -0.62 -16.10 2.02 -797.62 -1.61 -17.72 16 10 C 0.13 3.27 4.75 85.63 0.41 3.67 16 11 C 0.49 15.97 7.54 87.66 0.66 16.63 16 12 O -0.57 -22.13 14.06 -3.04 -0.04 -22.17 16 13 N -0.60 -20.13 2.94 -817.22 -2.40 -22.53 16 14 C 0.09 2.91 6.54 86.56 0.57 3.48 16 15 C 0.16 6.88 5.54 86.56 0.48 7.36 16 16 N -0.61 -28.51 2.97 -697.45 -2.07 -30.57 16 17 C -0.27 -13.80 9.58 84.03 0.80 -13.00 16 18 H 0.06 3.29 7.89 -2.91 -0.02 3.26 16 19 C -0.04 -2.11 4.90 84.86 0.42 -1.69 16 20 N -0.93 -50.54 11.20 21.65 0.24 -50.30 16 21 Si 0.96 42.51 29.59 68.60 2.03 44.54 16 22 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 23 H -0.30 -13.16 7.11 99.48 0.71 -12.45 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 25 C 0.14 5.52 6.67 86.40 0.58 6.09 16 26 C 0.11 3.82 6.59 86.40 0.57 4.38 16 27 H 0.09 0.83 7.56 -2.39 -0.02 0.81 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.05 1.17 7.40 -2.39 -0.02 1.15 16 32 H 0.07 1.41 8.10 -2.39 -0.02 1.39 16 33 H 0.45 -0.86 9.15 -74.06 -0.68 -1.54 16 34 H 0.12 2.94 7.84 -2.39 -0.02 2.92 16 35 H 0.15 2.56 7.06 -2.39 -0.02 2.55 16 36 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 37 H 0.11 2.61 5.91 -2.39 -0.01 2.60 16 38 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.08 3.60 5.98 -2.39 -0.01 3.59 16 40 H 0.25 13.36 8.31 -92.71 -0.77 12.59 16 41 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.07 2.68 7.94 -2.39 -0.02 2.66 16 43 H 0.08 2.94 6.99 -2.39 -0.02 2.93 16 44 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 Total: -1.00 -81.08 359.55 -1.43 -82.51 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 0.36 Total: 7.76 kcal Atomic # 6 Polarization: 51.10 SS G_CDS: 7.91 Total: 59.00 kcal Atomic # 7 Polarization: -132.36 SS G_CDS: -10.59 Total: -142.95 kcal Atomic # 8 Polarization: -49.74 SS G_CDS: -1.14 Total: -50.87 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -81.08 -1.43 -82.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329910155.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.792 kcal (2) G-P(sol) polarization free energy of solvation -81.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds