Wall clock time and date at job start Tue Mar 31 2020 05:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 119.99888 * 2 1 4 4 H 1.48505 * 109.47115 * 269.99893 * 3 2 1 5 5 H 1.48505 * 109.47000 * 29.99684 * 3 2 1 6 6 H 1.48497 * 109.46974 * 149.99615 * 3 2 1 7 7 C 1.38950 * 120.00169 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99745 * 0.02562 * 7 2 1 9 9 N 1.37091 * 120.00083 * 180.02562 * 7 2 1 10 10 C 1.34783 * 120.00055 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99575 * 359.97438 * 10 9 7 12 12 C 1.50693 * 119.99859 * 179.97438 * 10 9 7 13 13 N 1.46501 * 109.47134 * 179.97438 * 12 10 9 14 14 C 1.34776 * 120.00378 * 179.97438 * 13 12 10 15 15 O 1.21588 * 119.99792 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00418 * 179.97438 * 14 13 12 17 17 C 1.47429 * 125.64181 * 0.04474 * 16 14 13 18 18 C 1.54909 * 104.82602 * 204.08943 * 17 16 14 19 19 C 1.55155 * 101.58315 * 322.99190 * 18 17 16 20 20 C 1.47015 * 125.65088 * 179.97438 * 16 14 13 21 21 H 1.09001 * 109.88136 * 59.40469 * 20 16 14 22 22 C 1.50701 * 109.88150 * 298.39890 * 20 16 14 23 23 O 1.21282 * 120.00026 * 341.44710 * 22 20 16 24 24 N 1.34776 * 120.00004 * 161.45766 * 22 20 16 25 25 C 1.46501 * 120.00136 * 179.97438 * 24 22 20 26 26 C 1.53001 * 117.51946 * 136.28005 * 25 24 22 27 27 C 1.52999 * 60.00190 * 107.47992 * 26 25 24 28 28 H 0.96996 * 120.00123 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00096 * 359.97438 * 9 7 2 30 30 H 1.09003 * 109.47296 * 59.99621 * 12 10 9 31 31 H 1.08999 * 109.47509 * 299.99527 * 12 10 9 32 32 H 0.97006 * 119.99891 * 359.97438 * 13 12 10 33 33 H 1.08996 * 110.37023 * 322.92509 * 17 16 14 34 34 H 1.09000 * 110.36547 * 85.14734 * 17 16 14 35 35 H 1.08995 * 111.00752 * 81.06920 * 18 17 16 36 36 H 1.09000 * 111.00408 * 204.87843 * 18 17 16 37 37 H 1.09003 * 110.72044 * 277.13646 * 19 18 17 38 38 H 1.09002 * 110.72106 * 153.86641 * 19 18 17 39 39 H 0.97003 * 120.00282 * 359.97438 * 24 22 20 40 40 H 1.09002 * 115.54982 * 350.57802 * 25 24 22 41 41 H 1.09001 * 117.49733 * 214.97423 * 26 25 24 42 42 H 1.08995 * 117.49577 * 359.97438 * 26 25 24 43 43 H 1.09004 * 117.50150 * 252.51496 * 27 26 25 44 44 H 1.09004 * 117.49681 * 107.48417 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3798 -1.2033 0.0011 10 6 4.0538 -2.3705 0.0011 11 8 3.4473 -3.4209 0.0011 12 6 5.5607 -2.3705 0.0011 13 7 6.0491 -3.7517 0.0017 14 6 7.3742 -3.9980 0.0013 15 8 8.1643 -3.0738 -0.0001 16 7 7.8235 -5.2686 0.0024 17 6 6.9804 -6.4780 0.0031 18 6 7.8750 -7.5846 0.6154 19 6 9.2650 -7.2208 0.0299 20 6 9.2355 -5.6782 0.0015 21 1 9.7376 -5.2794 0.8830 22 6 9.9143 -5.1751 -1.2463 23 8 9.2507 -4.8400 -2.2046 24 7 11.2589 -5.0978 -1.2975 25 6 11.9188 -4.6093 -2.5108 26 6 13.0742 -3.6212 -2.3381 27 6 13.3579 -5.0631 -2.7638 28 1 -0.4850 0.8400 -0.0004 29 1 3.8649 -0.3632 0.0007 30 1 5.9241 -1.8565 0.8910 31 1 5.9241 -1.8567 -0.8889 32 1 5.4188 -4.4890 0.0024 33 1 6.0945 -6.3225 0.6188 34 1 6.6927 -6.7405 -1.0150 35 1 7.8815 -7.5241 1.7037 36 1 7.5568 -8.5727 0.2830 37 1 9.3764 -7.6227 -0.9772 38 1 10.0631 -7.5796 0.6799 39 1 11.7897 -5.3656 -0.5311 40 1 11.2718 -4.4804 -3.3785 41 1 13.1872 -2.8423 -3.0922 42 1 13.3432 -3.3342 -1.3216 43 1 13.8137 -5.7250 -2.0273 44 1 13.6576 -5.2329 -3.7980 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358308105.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:03 Heat of formation + Delta-G solvation = -57.880706 kcal Electronic energy + Delta-G solvation = -27407.736326 eV Core-core repulsion = 23361.572925 eV Total energy + Delta-G solvation = -4046.163400 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.87009 -39.42628 -38.47258 -37.55985 -36.86402 -34.45812 -33.70652 -33.13655 -31.83086 -31.61210 -29.73383 -27.59821 -24.72888 -24.00341 -22.75293 -22.53145 -21.65314 -20.97730 -19.71455 -19.56904 -18.82236 -18.03077 -17.73344 -16.68195 -16.28881 -15.60566 -15.38491 -15.23719 -14.94301 -14.88792 -14.76338 -14.35393 -14.10441 -13.79639 -13.45268 -13.25932 -13.07659 -13.01157 -12.66683 -12.42215 -12.21030 -12.10611 -11.98127 -11.92181 -11.60339 -11.57015 -11.26399 -11.20171 -10.87485 -10.60957 -10.07054 -10.04714 -10.01811 -9.66285 -9.00965 -8.95233 -8.72669 -8.51198 -8.26748 -6.37591 -3.89875 2.30476 2.53286 2.88125 3.02952 3.07854 3.15322 3.41390 3.57722 3.62111 3.99701 4.06981 4.15930 4.27886 4.41845 4.44107 4.60199 4.62680 4.63367 4.72991 4.84704 5.11842 5.17683 5.23591 5.28075 5.42291 5.44483 5.50541 5.52296 5.61657 5.69878 5.70216 5.81404 5.85073 5.92180 6.06022 6.24596 6.70447 7.03881 7.25383 7.48466 8.03621 8.06858 8.13943 8.48071 8.76916 8.85071 9.33460 9.67484 10.74631 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.017298 B = 0.002649 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.328918 B =10567.391042 C =11851.302420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.309 4.309 8 H 0.122 0.878 9 N -0.577 5.577 10 C 0.440 3.560 11 O -0.579 6.579 12 C 0.126 3.874 13 N -0.720 5.720 14 C 0.731 3.269 15 O -0.590 6.590 16 N -0.619 5.619 17 C 0.096 3.904 18 C -0.128 4.128 19 C -0.120 4.120 20 C 0.143 3.857 21 H 0.096 0.904 22 C 0.513 3.487 23 O -0.516 6.516 24 N -0.704 5.704 25 C 0.084 3.916 26 C -0.194 4.194 27 C -0.191 4.191 28 H 0.275 0.725 29 H 0.375 0.625 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.408 0.592 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.399 0.601 40 H 0.136 0.864 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.258 -14.077 0.492 29.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.437 4.437 8 H 0.139 0.861 9 N -0.215 5.215 10 C 0.226 3.774 11 O -0.463 6.463 12 C -0.002 4.002 13 N -0.378 5.378 14 C 0.433 3.567 15 O -0.468 6.468 16 N -0.358 5.358 17 C -0.027 4.027 18 C -0.166 4.166 19 C -0.159 4.159 20 C 0.034 3.966 21 H 0.114 0.886 22 C 0.298 3.702 23 O -0.389 6.389 24 N -0.355 5.355 25 C -0.023 4.023 26 C -0.232 4.232 27 C -0.229 4.229 28 H 0.086 0.914 29 H 0.208 0.792 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.246 0.754 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.234 0.766 40 H 0.154 0.846 41 H 0.120 0.880 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 25.585 -13.598 -0.207 28.975 hybrid contribution 0.599 1.078 0.323 1.275 sum 26.184 -12.521 0.117 29.024 Atomic orbital electron populations 1.69618 1.05692 1.27766 1.48372 1.25060 0.95536 0.98156 0.97186 0.86672 0.79918 0.83761 0.79165 1.19387 1.20013 1.19199 1.19437 0.78955 0.96784 1.48544 0.86086 1.42112 1.07681 1.06125 1.65567 1.19642 0.88052 0.84862 0.84799 1.90526 1.69261 1.30936 1.55605 1.20811 0.93330 0.82818 1.03247 1.44689 1.04906 1.09294 1.78906 1.15214 0.82700 0.81304 0.77503 1.90900 1.55233 1.42153 1.58504 1.47151 1.05238 1.04390 1.79027 1.22375 0.94468 0.84229 1.01608 1.22761 0.93782 0.98829 1.01203 1.22624 0.99208 0.91078 1.02951 1.21241 0.83465 0.95894 0.95999 0.88578 1.20991 0.81801 0.77447 0.89955 1.90722 1.64031 1.46735 1.37406 1.45324 1.06569 1.67223 1.16421 1.21554 0.88787 1.01352 0.90562 1.23413 1.03271 0.93240 1.03302 1.23380 0.98543 0.97865 1.03111 0.91427 0.79226 0.89897 0.89851 0.75429 0.89864 0.90962 0.89950 0.89188 0.89946 0.88952 0.76643 0.84627 0.88011 0.88446 0.88527 0.87959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.33 13.96 55.50 0.77 -24.56 16 2 C 0.04 1.22 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 19.45 27.74 -169.99 -4.71 14.73 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 7 C -0.31 -8.67 10.16 -14.94 -0.15 -8.83 16 8 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 9 N -0.58 -13.86 5.09 -10.96 -0.06 -13.92 16 10 C 0.44 10.11 7.85 -10.99 -0.09 10.02 16 11 O -0.58 -15.03 15.24 5.55 0.08 -14.95 16 12 C 0.13 2.39 6.15 -5.20 -0.03 2.36 16 13 N -0.72 -12.97 5.49 -66.42 -0.36 -13.34 16 14 C 0.73 13.03 7.89 -86.92 -0.69 12.34 16 15 O -0.59 -12.22 16.15 5.29 0.09 -12.14 16 16 N -0.62 -8.45 2.75 -170.01 -0.47 -8.92 16 17 C 0.10 0.99 6.57 -2.53 -0.02 0.97 16 18 C -0.13 -0.81 7.09 -24.58 -0.17 -0.99 16 19 C -0.12 -0.76 6.47 -24.90 -0.16 -0.92 16 20 C 0.14 1.51 3.26 -68.11 -0.22 1.28 16 21 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 22 C 0.51 6.59 6.27 -10.99 -0.07 6.52 16 23 O -0.52 -9.15 15.70 5.56 0.09 -9.06 16 24 N -0.70 -6.49 5.57 -53.80 -0.30 -6.79 16 25 C 0.08 0.77 6.43 -67.93 -0.44 0.33 16 26 C -0.19 -1.44 10.46 -26.73 -0.28 -1.72 16 27 C -0.19 -1.16 10.45 -26.73 -0.28 -1.44 16 28 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.37 7.99 5.76 -40.82 -0.24 7.76 16 30 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.41 7.16 5.92 -40.82 -0.24 6.92 16 33 H 0.08 0.85 7.30 -51.93 -0.38 0.47 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.55 7.84 -51.93 -0.41 0.14 16 38 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.40 2.34 8.83 -40.82 -0.36 1.98 16 40 H 0.14 1.53 7.40 -51.93 -0.38 1.15 16 41 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 371.27 15.07 5.59 5.59 Total: -1.00 -37.78 371.27 -8.18 -45.96 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: -6.21 Total: 16.32 kcal Atomic # 6 Polarization: 23.75 SS G_CDS: -2.69 Total: 21.06 kcal Atomic # 7 Polarization: -67.10 SS G_CDS: -0.41 Total: -67.51 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: 0.26 Total: -36.15 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.71 Total: 14.73 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.78 -8.18 -45.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358308105.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.917 kcal (2) G-P(sol) polarization free energy of solvation -37.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds