Wall clock time and date at job start Tue Mar 31 2020 05:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35995 * 117.00124 * 2 1 4 4 C 1.38569 * 120.07197 * 0.02562 * 3 2 1 5 5 C 1.38236 * 119.99808 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.92780 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.46769 * 90.00100 * 6 5 4 8 8 C 1.34777 * 119.99828 * 179.72341 * 7 6 5 9 9 O 1.21593 * 119.99949 * 0.28071 * 8 7 6 10 10 N 1.34777 * 120.00128 * 180.27942 * 8 7 6 11 11 C 1.46499 * 120.00065 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47138 * 179.97438 * 11 10 8 13 13 H 1.08001 * 120.00043 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00213 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99609 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00201 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46807 * 60.00091 * 16 14 12 18 18 H 1.48498 * 109.47276 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47057 * 299.99983 * 16 14 12 20 20 C 1.38258 * 120.14919 * 0.28047 * 5 4 3 21 21 C 1.38244 * 120.14309 * 359.44412 * 20 5 4 22 22 C 1.38566 * 119.99897 * 0.55108 * 21 20 5 23 23 O 1.35994 * 120.07374 * 179.70229 * 22 21 20 24 24 C 1.42893 * 117.00139 * 0.02614 * 23 22 21 25 25 C 1.52997 * 109.47462 * 179.97438 * 24 23 22 26 26 O 1.42900 * 109.47301 * 64.99889 * 25 24 23 27 27 H 1.08994 * 109.46980 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46799 * 299.99833 * 1 2 3 29 29 H 1.09004 * 109.46890 * 59.99836 * 1 2 3 30 30 H 1.08000 * 120.00167 * 359.97438 * 4 3 2 31 31 H 1.09004 * 109.47210 * 330.00458 * 6 5 4 32 32 H 1.08994 * 109.47121 * 210.00428 * 6 5 4 33 33 H 0.97001 * 120.00384 * 0.02562 * 7 6 5 34 34 H 0.97000 * 119.99549 * 359.97438 * 10 8 7 35 35 H 1.09000 * 109.47602 * 299.99940 * 11 10 8 36 36 H 1.09006 * 109.46868 * 59.99976 * 11 10 8 37 37 H 0.96997 * 119.99506 * 180.02562 * 15 14 12 38 38 H 1.07995 * 119.93015 * 179.70134 * 20 5 4 39 39 H 1.07997 * 120.00420 * 180.25272 * 21 20 5 40 40 H 1.09006 * 109.46914 * 299.99704 * 24 23 22 41 41 H 1.09001 * 109.47203 * 59.99775 * 24 23 22 42 42 H 1.09000 * 109.47345 * 184.99650 * 25 24 23 43 43 H 1.09003 * 109.47221 * 304.99772 * 25 24 23 44 44 H 0.96705 * 114.00484 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2933 2.3748 0.0005 5 6 1.9224 3.6057 0.0011 6 6 1.1017 4.8696 0.0011 7 7 0.8354 5.2788 1.3823 8 6 0.1184 6.3931 1.6286 9 8 -0.3117 7.0560 0.7044 10 7 -0.1220 6.7727 2.8993 11 6 -0.9018 7.9836 3.1671 12 6 -1.0256 8.1825 4.6558 13 1 -0.5687 7.4776 5.3346 14 6 -1.7212 9.2649 5.1512 15 7 -2.2772 10.1235 4.3246 16 14 -1.8741 9.5117 6.9965 17 1 -0.5205 9.6526 7.5908 18 1 -2.6647 10.7391 7.2679 19 1 -2.5591 8.3393 7.5977 20 6 3.3030 3.6798 -0.0048 21 6 4.0604 2.5233 0.0004 22 6 3.4360 1.2863 0.0000 23 8 4.1796 0.1476 -0.0011 24 6 5.6003 0.3005 -0.0010 25 6 6.2618 -1.0790 -0.0016 26 8 5.9543 -1.7543 -1.2229 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.2147 2.3197 0.0005 31 1 0.1576 4.6898 -0.5131 32 1 1.6504 5.6591 -0.5124 33 1 1.1787 4.7501 2.1196 34 1 0.2208 6.2436 3.6365 35 1 -0.3994 8.8444 2.7257 36 1 -1.8953 7.8798 2.7308 37 1 -2.7663 10.8852 4.6732 38 1 3.7909 4.6433 -0.0092 39 1 5.1387 2.5839 -0.0001 40 1 5.9065 0.8510 -0.8907 41 1 5.9066 0.8496 0.8894 42 1 7.3420 -0.9641 0.0879 43 1 5.8874 -1.6618 0.8400 44 1 6.3417 -2.6376 -1.2923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426453446.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:51 Heat of formation + Delta-G solvation = -129.336613 kcal Electronic energy + Delta-G solvation = -26325.448965 eV Core-core repulsion = 22243.894253 eV Total energy + Delta-G solvation = -4081.554712 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.86235 -39.20529 -38.87667 -37.59092 -36.88619 -34.46354 -33.87620 -32.29709 -31.16531 -30.65752 -29.66070 -27.82123 -27.06782 -25.29497 -23.88756 -22.52788 -21.95603 -21.33960 -20.13975 -18.89182 -18.19377 -18.05966 -17.30577 -16.89274 -16.25740 -16.06930 -15.67423 -15.54944 -15.18229 -14.90324 -14.76374 -14.63591 -14.57203 -14.20297 -13.84255 -13.46671 -13.17390 -13.07865 -12.77786 -12.50100 -12.15876 -11.98875 -11.91654 -11.63653 -11.41600 -11.34681 -11.30286 -11.15963 -10.95176 -10.85048 -10.54932 -10.28126 -9.43666 -9.35919 -8.95190 -8.75331 -8.64412 -8.01226 -7.72302 -6.12946 -4.19441 0.99880 1.15899 2.82673 3.05257 3.25025 3.27287 3.32208 3.34194 3.69285 3.75584 3.98749 4.35445 4.39583 4.50454 4.59203 4.62008 4.75105 4.80828 4.88695 4.98201 5.01109 5.05570 5.15491 5.19050 5.21837 5.22897 5.31130 5.37082 5.62417 5.81857 5.92023 6.00666 6.39119 6.43554 6.79877 6.87443 7.13076 7.15773 7.33748 7.54779 7.58414 7.60286 7.94246 8.07656 8.79240 8.97850 9.36422 9.51086 10.97237 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.019711 B = 0.001994 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.183871 B =14035.310051 C =14243.461786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.307 6.307 3 C 0.097 3.903 4 C -0.152 4.152 5 C -0.098 4.098 6 C 0.186 3.814 7 N -0.754 5.754 8 C 0.693 3.307 9 O -0.602 6.602 10 N -0.730 5.730 11 C 0.267 3.733 12 C -0.542 4.542 13 H 0.062 0.938 14 C 0.063 3.937 15 N -0.885 5.885 16 Si 0.904 3.096 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.276 1.276 20 C -0.095 4.095 21 C -0.177 4.177 22 C 0.105 3.895 23 O -0.297 6.297 24 C 0.057 3.943 25 C 0.079 3.921 26 O -0.566 6.566 27 H 0.099 0.901 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.138 0.862 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.392 0.608 34 H 0.386 0.614 35 H 0.025 0.975 36 H 0.024 0.976 37 H 0.266 0.734 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.591 -24.712 -8.734 31.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.220 6.220 3 C 0.051 3.949 4 C -0.171 4.171 5 C -0.099 4.099 6 C 0.061 3.939 7 N -0.412 5.412 8 C 0.392 3.608 9 O -0.481 6.481 10 N -0.382 5.382 11 C 0.146 3.854 12 C -0.581 4.581 13 H 0.080 0.920 14 C -0.141 4.141 15 N -0.523 5.523 16 Si 0.732 3.268 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.114 4.114 21 C -0.196 4.196 22 C 0.059 3.941 23 O -0.210 6.210 24 C -0.019 4.019 25 C 0.001 3.999 26 O -0.371 6.371 27 H 0.118 0.882 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.156 0.844 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.225 0.775 34 H 0.218 0.782 35 H 0.043 0.957 36 H 0.042 0.958 37 H 0.076 0.924 38 H 0.149 0.851 39 H 0.152 0.848 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 15.724 -23.697 -9.707 30.050 hybrid contribution 0.477 -0.471 1.833 1.951 sum 16.201 -24.167 -7.875 30.142 Atomic orbital electron populations 1.23092 0.78401 1.03986 1.01534 1.86173 1.21106 1.25716 1.89048 1.18201 0.89036 0.85270 1.02357 1.21042 1.00234 0.90768 1.05067 1.19672 0.93799 0.94123 1.02311 1.19844 0.98294 0.92072 0.83671 1.45207 1.59952 1.28417 1.07593 1.16158 0.79376 0.80677 0.84556 1.90875 1.57480 1.55996 1.43740 1.45716 1.57863 1.30467 1.04117 1.18974 0.90419 0.80290 0.95726 1.21197 1.35382 1.10383 0.91093 0.92020 1.24947 0.95083 0.95485 0.98539 1.69973 1.34192 1.13478 1.34640 0.86469 0.78211 0.77623 0.84537 1.20113 1.21093 1.20122 1.20844 0.92895 0.98153 0.99473 1.21043 1.00314 0.90969 1.07230 1.18258 0.88239 0.86041 1.01542 1.86222 1.17793 1.28192 1.88814 1.22881 0.79483 0.97431 1.02098 1.22185 0.97737 0.92366 0.87640 1.86580 1.78001 1.33984 1.38569 0.88229 0.92482 0.92578 0.84403 0.91192 0.90948 0.77489 0.78181 0.95735 0.95760 0.92432 0.85113 0.84768 0.91214 0.90503 0.91429 0.92362 0.77211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.68 10.28 -34.23 -0.35 -4.03 16 3 C 0.10 1.16 6.70 -39.12 -0.26 0.90 16 4 C -0.15 -1.68 8.69 -39.46 -0.34 -2.02 16 5 C -0.10 -1.11 5.25 -104.62 -0.55 -1.66 16 6 C 0.19 2.49 5.80 -5.19 -0.03 2.46 16 7 N -0.75 -11.53 5.55 -66.41 -0.37 -11.90 16 8 C 0.69 14.52 8.57 -86.92 -0.74 13.77 16 9 O -0.60 -15.24 16.34 5.28 0.09 -15.16 16 10 N -0.73 -15.87 5.55 -66.41 -0.37 -16.24 16 11 C 0.27 7.24 5.43 -5.19 -0.03 7.22 16 12 C -0.54 -14.90 9.28 -34.44 -0.32 -15.22 16 13 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 15 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 16 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 C -0.09 -0.97 9.69 -39.57 -0.38 -1.35 16 21 C -0.18 -1.72 9.04 -39.46 -0.36 -2.08 16 22 C 0.11 1.22 6.70 -39.12 -0.26 0.96 16 23 O -0.30 -3.44 9.89 -40.69 -0.40 -3.84 16 24 C 0.06 0.42 5.12 37.16 0.19 0.61 16 25 C 0.08 0.46 7.43 37.16 0.28 0.73 16 26 O -0.57 -4.31 13.62 -40.08 -0.55 -4.86 16 27 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 29 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 30 H 0.14 1.36 6.30 -52.49 -0.33 1.03 16 31 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 32 H 0.07 1.00 8.08 -51.93 -0.42 0.59 16 33 H 0.39 5.03 8.48 -40.82 -0.35 4.69 16 34 H 0.39 7.20 8.34 -40.82 -0.34 6.86 16 35 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 39 H 0.13 0.96 6.30 -52.49 -0.33 0.63 16 40 H 0.07 0.50 7.66 -51.93 -0.40 0.10 16 41 H 0.08 0.41 7.66 -51.93 -0.40 0.01 16 42 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.38 1.01 9.12 45.56 0.42 1.43 16 LS Contribution 378.36 15.07 5.70 5.70 Total: -1.00 -37.35 378.36 -7.89 -45.23 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -5.43 Total: 7.51 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -1.92 Total: 7.19 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: 0.00 Total: -53.73 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -1.21 Total: -27.88 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.35 -7.89 -45.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426453446.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.102 kcal (2) G-P(sol) polarization free energy of solvation -37.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds