Wall clock time and date at job start Tue Mar 31 2020 05:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.47554 * 2 1 4 4 C 1.50700 * 109.47015 * 120.00425 * 2 1 3 5 5 O 1.21279 * 120.00587 * 91.19611 * 4 2 1 6 6 N 1.34784 * 119.99504 * 271.19479 * 4 2 1 7 7 C 1.47416 * 125.64991 * 0.02562 * 6 4 2 8 8 C 1.54910 * 104.83202 * 204.09285 * 7 6 4 9 9 C 1.55162 * 101.58166 * 322.99057 * 8 7 6 10 10 O 1.42904 * 110.71697 * 277.13888 * 9 8 7 11 11 C 1.50701 * 110.72088 * 154.04438 * 9 8 7 12 12 H 1.07991 * 119.99718 * 241.45238 * 11 9 8 13 13 C 1.37879 * 119.99974 * 61.45348 * 11 9 8 14 14 N 1.31519 * 119.99820 * 359.97438 * 13 11 9 15 15 Si 1.86794 * 120.00033 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.46973 * 59.99685 * 15 13 11 17 17 H 1.48498 * 109.47533 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47222 * 300.00067 * 15 13 11 19 19 C 1.47024 * 125.64370 * 179.71746 * 6 4 2 20 20 N 1.46904 * 109.47336 * 239.99568 * 2 1 3 21 21 C 1.46893 * 111.00123 * 176.24553 * 20 2 1 22 22 C 1.46903 * 110.99421 * 52.29742 * 20 2 1 23 23 C 1.53002 * 109.47167 * 187.64894 * 22 20 2 24 24 F 1.39902 * 109.46878 * 53.84892 * 23 22 20 25 25 F 1.39890 * 109.47298 * 173.85109 * 23 22 20 26 26 F 1.39898 * 109.46697 * 293.85641 * 23 22 20 27 27 H 1.09006 * 109.46982 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47355 * 299.99935 * 1 2 3 29 29 H 1.08999 * 109.47360 * 60.00431 * 1 2 3 30 30 H 1.09000 * 110.36660 * 322.93121 * 7 6 4 31 31 H 1.08998 * 110.36759 * 85.14556 * 7 6 4 32 32 H 1.09001 * 111.00761 * 81.06144 * 8 7 6 33 33 H 1.09004 * 111.00312 * 204.91591 * 8 7 6 34 34 H 0.96697 * 114.00092 * 298.54237 * 10 9 8 35 35 H 0.96999 * 119.99510 * 179.97438 * 14 13 11 36 36 H 1.08996 * 109.88442 * 298.38860 * 19 6 4 37 37 H 1.09002 * 109.88359 * 59.56099 * 19 6 4 38 38 H 1.09005 * 109.47362 * 50.84060 * 21 20 2 39 39 H 1.09005 * 109.47512 * 170.84054 * 21 20 2 40 40 H 1.08998 * 109.47460 * 290.83792 * 21 20 2 41 41 H 1.09003 * 109.46827 * 307.64519 * 22 20 2 42 42 H 1.08994 * 109.47190 * 67.64484 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.2551 -1.9021 1.1942 6 7 2.2339 -0.0216 2.3712 7 6 2.0044 1.4230 2.5545 8 6 2.9231 1.8238 3.7356 9 6 2.8173 0.5749 4.6503 10 8 1.6426 0.6405 5.4615 11 6 4.0484 0.4366 5.5084 12 1 4.6738 -0.4392 5.4182 13 6 4.3763 1.4281 6.4086 14 7 3.6148 2.4949 6.5180 15 14 5.9026 1.2570 7.4717 16 1 7.1019 1.1507 6.6023 17 1 6.0314 2.4486 8.3485 18 1 5.7884 0.0359 8.3089 19 6 2.7132 -0.5877 3.6406 20 7 2.0197 -0.6926 -1.1994 21 6 3.4853 -0.6349 -1.2791 22 6 1.4044 -0.1408 -2.4139 23 6 1.7878 -1.0043 -3.6174 24 9 1.4585 -2.3390 -3.3575 25 9 1.0917 -0.5639 -4.7480 26 9 3.1639 -0.8998 -3.8467 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 2.2846 1.9690 1.6537 31 1 0.9601 1.6127 2.8027 32 1 3.9486 1.9756 3.3989 33 1 2.5441 2.7119 4.2415 34 1 1.6204 1.3990 6.0608 35 1 3.8453 3.1923 7.1516 36 1 2.0069 -1.3343 4.0037 37 1 3.6942 -1.0409 3.4975 38 1 3.9139 -0.9630 -0.3320 39 1 3.8317 -1.2879 -2.0802 40 1 3.7981 0.3889 -1.4841 41 1 0.3202 -0.1353 -2.3015 42 1 1.7587 0.8780 -2.5700 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592850470.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:40 Heat of formation + Delta-G solvation = -239.804692 kcal Electronic energy + Delta-G solvation = -29140.350359 eV Core-core repulsion = 24512.148652 eV Total energy + Delta-G solvation = -4628.201708 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.07897 -48.64418 -48.49407 -41.39667 -39.46737 -38.07035 -36.09959 -34.20760 -32.89275 -31.18481 -30.64212 -30.03230 -27.26924 -26.17075 -25.26723 -23.87919 -22.67029 -21.45246 -20.15622 -19.54818 -19.38341 -19.21253 -18.67499 -17.92914 -16.98359 -16.95898 -16.86938 -16.24332 -16.05872 -15.94373 -15.53286 -15.39608 -15.19190 -14.95707 -14.79513 -14.71253 -14.68978 -14.50099 -14.26548 -13.89018 -13.54050 -13.41733 -13.29935 -13.23393 -13.08080 -12.97387 -12.67256 -12.59271 -12.54888 -12.38537 -12.28584 -12.24885 -11.96852 -11.27391 -10.81734 -10.61124 -10.14660 -9.62752 -9.58400 -8.25201 -6.39132 1.42080 1.44341 1.49035 1.51137 1.71065 1.94738 2.38701 2.54642 2.85780 3.00419 3.07996 3.36116 3.46401 3.83011 3.90704 3.97406 4.02355 4.06008 4.16505 4.25602 4.35080 4.43177 4.46150 4.58733 4.66465 4.69011 4.79187 4.91123 4.93976 5.16665 5.18561 5.23317 5.46273 5.53752 5.58332 5.66319 5.76345 6.08580 6.58567 6.65506 7.16769 7.31111 7.41115 8.80365 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.027550 B = 0.002849 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.097302 B = 9826.171293 C =10117.813228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.082 3.918 3 H 0.095 0.905 4 C 0.522 3.478 5 O -0.574 6.574 6 N -0.611 5.611 7 C 0.103 3.897 8 C -0.125 4.125 9 C 0.237 3.763 10 O -0.592 6.592 11 C -0.566 4.566 12 H 0.048 0.952 13 C 0.041 3.959 14 N -0.902 5.902 15 Si 0.955 3.045 16 H -0.274 1.274 17 H -0.276 1.276 18 H -0.279 1.279 19 C 0.131 3.869 20 N -0.537 5.537 21 C 0.008 3.992 22 C 0.007 3.993 23 C 0.456 3.544 24 F -0.186 7.186 25 F -0.180 7.180 26 F -0.189 7.189 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.380 0.620 35 H 0.272 0.728 36 H 0.041 0.959 37 H 0.054 0.946 38 H 0.048 0.952 39 H 0.085 0.915 40 H 0.056 0.944 41 H 0.149 0.851 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.022 3.571 -18.509 19.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.029 4.029 3 H 0.112 0.888 4 C 0.311 3.689 5 O -0.453 6.453 6 N -0.344 5.344 7 C -0.019 4.019 8 C -0.164 4.164 9 C 0.197 3.803 10 O -0.401 6.401 11 C -0.604 4.604 12 H 0.066 0.934 13 C -0.161 4.161 14 N -0.541 5.541 15 Si 0.781 3.219 16 H -0.200 1.200 17 H -0.201 1.201 18 H -0.205 1.205 19 C 0.008 3.992 20 N -0.263 5.263 21 C -0.140 4.140 22 C -0.121 4.121 23 C 0.402 3.598 24 F -0.168 7.168 25 F -0.162 7.162 26 F -0.170 7.170 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.127 0.873 30 H 0.118 0.882 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.230 0.770 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.103 0.897 40 H 0.074 0.926 41 H 0.166 0.834 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.210 2.018 -18.820 19.921 hybrid contribution 1.572 0.661 1.145 2.054 sum -4.639 2.678 -17.675 18.469 Atomic orbital electron populations 1.21949 0.89602 1.03700 1.05033 1.21595 0.98855 0.96191 0.86224 0.88798 1.20741 0.77328 0.86883 0.83943 1.90671 1.53190 1.16855 1.84611 1.48733 1.64546 1.11004 1.10132 1.22587 1.00364 0.79132 0.99769 1.23070 0.98268 0.99820 0.95222 1.19574 0.83473 0.90166 0.87124 1.86127 1.43786 1.53088 1.57117 1.21693 1.09915 1.05718 1.23086 0.93386 1.25524 0.99208 0.94326 0.97057 1.69729 1.39131 1.08716 1.36531 0.85658 0.79938 0.77585 0.78699 1.19954 1.20124 1.20511 1.21734 0.97470 0.96652 0.83380 1.61454 1.07746 1.56388 1.00692 1.22788 0.86167 1.01915 1.03083 1.23539 1.05461 0.97139 0.85982 1.20665 0.74221 0.79833 0.85102 1.93203 1.92200 1.37391 1.94001 1.93189 1.79117 1.89249 1.54644 1.93121 1.32644 1.96006 1.95259 0.92261 0.90431 0.87327 0.88179 0.90407 0.92589 0.90024 0.77042 0.91845 0.94072 0.92739 0.93340 0.89666 0.92578 0.83378 0.86932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 8.70 71.98 0.63 -1.89 16 2 C 0.08 1.86 2.04 44.17 0.09 1.95 16 3 H 0.09 1.65 6.56 -2.39 -0.02 1.64 16 4 C 0.52 18.09 5.87 87.66 0.51 18.61 16 5 O -0.57 -25.02 16.34 -3.02 -0.05 -25.07 16 6 N -0.61 -22.34 3.33 -811.79 -2.70 -25.03 16 7 C 0.10 3.17 6.66 86.86 0.58 3.75 16 8 C -0.13 -4.99 5.47 31.99 0.18 -4.82 16 9 C 0.24 11.13 0.84 -10.35 -0.01 11.12 16 10 O -0.59 -28.95 13.06 -148.98 -1.95 -30.90 16 11 C -0.57 -29.52 8.23 25.60 0.21 -29.31 16 12 H 0.05 2.57 7.58 -2.92 -0.02 2.55 16 13 C 0.04 2.04 5.28 84.65 0.45 2.49 16 14 N -0.90 -44.51 10.67 21.45 0.23 -44.28 16 15 Si 0.96 40.69 29.54 68.60 2.03 42.71 16 16 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 17 H -0.28 -11.29 7.11 99.48 0.71 -10.59 16 18 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 19 C 0.13 5.88 6.23 86.73 0.54 6.43 16 20 N -0.54 -12.15 4.16 -901.48 -3.75 -15.90 16 21 C 0.01 0.19 8.56 127.69 1.09 1.28 16 22 C 0.01 0.10 4.71 86.30 0.41 0.51 16 23 C 0.46 8.26 3.12 71.98 0.22 8.48 16 24 F -0.19 -4.42 17.13 44.97 0.77 -3.65 16 25 F -0.18 -3.01 17.32 44.97 0.78 -2.24 16 26 F -0.19 -3.76 14.27 44.97 0.64 -3.12 16 27 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 28 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.11 0.99 6.15 -2.39 -0.01 0.98 16 30 H 0.10 2.28 6.76 -2.39 -0.02 2.26 16 31 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.06 2.33 8.04 -2.39 -0.02 2.31 16 33 H 0.08 3.37 7.53 -2.38 -0.02 3.35 16 34 H 0.38 18.48 7.46 -74.06 -0.55 17.93 16 35 H 0.27 12.81 8.31 -92.71 -0.77 12.04 16 36 H 0.04 1.97 8.07 -2.39 -0.02 1.95 16 37 H 0.05 2.58 7.67 -2.39 -0.02 2.57 16 38 H 0.05 1.47 6.56 -2.38 -0.02 1.45 16 39 H 0.08 2.02 5.74 -2.38 -0.01 2.01 16 40 H 0.06 1.05 8.10 -2.39 -0.02 1.03 16 41 H 0.15 1.43 5.75 -2.39 -0.01 1.41 16 42 H 0.11 0.96 8.11 -2.39 -0.02 0.94 16 Total: -1.00 -63.92 345.65 1.41 -62.52 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 0.51 Total: 26.36 kcal Atomic # 6 Polarization: 13.70 SS G_CDS: 4.90 Total: 18.60 kcal Atomic # 7 Polarization: -78.99 SS G_CDS: -6.23 Total: -85.21 kcal Atomic # 8 Polarization: -53.97 SS G_CDS: -1.99 Total: -55.97 kcal Atomic # 9 Polarization: -11.19 SS G_CDS: 2.19 Total: -9.00 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.71 kcal Total: -63.92 1.41 -62.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850470.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.288 kcal (2) G-P(sol) polarization free energy of solvation -63.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds