Wall clock time and date at job start Tue Mar 31 2020 05:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46965 * 2 1 4 4 C 1.50704 * 109.47223 * 239.99659 * 2 1 3 5 5 O 1.21285 * 119.99958 * 262.77819 * 4 2 1 6 6 N 1.34775 * 120.00126 * 82.77688 * 4 2 1 7 7 C 1.47022 * 125.64616 * 355.02933 * 6 4 2 8 8 C 1.54322 * 107.39958 * 178.89614 * 7 6 4 9 9 C 1.55397 * 102.82966 * 337.97608 * 8 7 6 10 10 O 1.42893 * 110.89275 * 277.26539 * 9 8 7 11 11 C 1.50707 * 111.07252 * 153.48604 * 9 8 7 12 12 H 1.07997 * 119.99615 * 247.66766 * 11 9 8 13 13 C 1.37879 * 119.99888 * 67.66062 * 11 9 8 14 14 N 1.31516 * 119.99813 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 120.00007 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47198 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47245 * 120.00224 * 15 13 11 18 18 H 1.48497 * 109.47162 * 240.00125 * 15 13 11 19 19 C 1.47423 * 125.64738 * 175.06857 * 6 4 2 20 20 N 1.46896 * 109.46873 * 119.99647 * 2 1 3 21 21 C 1.46898 * 111.00064 * 46.48918 * 20 2 1 22 22 C 1.46904 * 111.00105 * 282.53494 * 20 2 1 23 23 C 1.53006 * 109.46789 * 283.53707 * 22 20 2 24 24 F 1.39898 * 109.46741 * 65.64982 * 23 22 20 25 25 F 1.39895 * 109.46758 * 185.64550 * 23 22 20 26 26 F 1.39892 * 109.47314 * 305.64828 * 23 22 20 27 27 H 1.09000 * 109.46722 * 51.90585 * 1 2 3 28 28 H 1.09001 * 109.47334 * 171.89517 * 1 2 3 29 29 H 1.08993 * 109.47643 * 291.90349 * 1 2 3 30 30 H 1.08999 * 109.88362 * 298.39313 * 7 6 4 31 31 H 1.09004 * 109.88707 * 59.40367 * 7 6 4 32 32 H 1.09007 * 110.71938 * 96.24678 * 8 7 6 33 33 H 1.09005 * 110.72035 * 219.51721 * 8 7 6 34 34 H 0.96702 * 114.00275 * 292.23113 * 10 9 8 35 35 H 0.96999 * 119.99440 * 179.97438 * 14 13 11 36 36 H 1.08998 * 110.36756 * 322.92861 * 19 6 4 37 37 H 1.08999 * 110.36746 * 85.14603 * 19 6 4 38 38 H 1.09004 * 109.47643 * 65.91601 * 21 20 2 39 39 H 1.09005 * 109.47424 * 185.91711 * 21 20 2 40 40 H 1.09002 * 109.47188 * 305.90995 * 21 20 2 41 41 H 1.08997 * 109.46844 * 43.53880 * 22 20 2 42 42 H 1.09001 * 109.47152 * 163.53902 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.3590 -1.8768 -1.1664 6 7 2.1187 -0.0499 -2.4020 7 6 1.6626 1.3264 -2.6453 8 6 1.9885 1.6678 -4.1145 9 6 3.1200 0.6602 -4.4600 10 8 4.3877 1.1442 -4.0122 11 6 3.1494 0.3640 -5.9374 12 1 2.8857 -0.6199 -6.2962 13 6 3.5127 1.3492 -6.8309 14 7 3.8341 2.5473 -6.3938 15 14 3.5484 0.9824 -8.6621 16 1 3.1467 -0.4285 -8.8923 17 1 2.6042 1.8866 -9.3666 18 1 4.9221 1.1978 -9.1834 19 6 2.6853 -0.5881 -3.6521 20 7 2.0196 -0.6924 1.1995 21 6 1.3049 -1.9593 1.4046 22 6 1.9145 0.1693 2.3846 23 6 3.0389 1.2067 2.3622 24 9 2.8561 2.0691 1.2759 25 9 3.0174 1.9433 3.5513 26 9 4.2712 0.5561 2.2389 27 1 -0.3633 0.6340 -0.8088 28 1 -0.3634 -1.0174 -0.1449 29 1 -0.3634 0.3833 0.9534 30 1 0.5877 1.3957 -2.4782 31 1 2.1859 2.0135 -1.9802 32 1 1.1188 1.5034 -4.7507 33 1 2.3433 2.6947 -4.2023 34 1 4.7013 1.9250 -4.4888 35 1 4.0901 3.2403 -7.0224 36 1 3.5472 -1.2197 -3.4369 37 1 1.9298 -1.1520 -4.1992 38 1 1.5415 -2.6459 0.5917 39 1 1.6115 -2.4000 2.3533 40 1 0.2312 -1.7721 1.4213 41 1 0.9505 0.6780 2.3794 42 1 1.9994 -0.4392 3.2849 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592850476.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:46 Heat of formation + Delta-G solvation = -241.471477 kcal Electronic energy + Delta-G solvation = -29750.422142 eV Core-core repulsion = 25122.148157 eV Total energy + Delta-G solvation = -4628.273985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.06507 -48.64738 -48.49911 -41.38001 -39.50815 -38.05666 -36.11324 -34.14062 -32.76087 -31.34485 -30.23564 -29.83527 -27.36815 -26.71935 -25.02394 -23.91064 -22.55135 -21.45793 -20.18201 -19.51894 -19.48086 -19.13158 -18.33857 -18.21296 -17.22236 -16.93471 -16.59508 -16.28123 -16.05968 -15.56785 -15.50486 -15.37404 -15.06459 -15.02419 -14.95343 -14.72254 -14.67972 -14.48393 -14.09492 -14.00337 -13.70195 -13.49195 -13.25448 -13.15163 -13.02502 -12.93462 -12.77040 -12.60801 -12.50089 -12.48237 -12.24886 -12.15960 -11.85044 -11.30222 -10.75603 -10.60894 -10.14543 -9.59993 -9.44547 -8.25457 -6.40204 1.41153 1.45564 1.54499 1.57458 1.77504 1.94855 2.39385 2.62598 2.91677 2.99640 3.07211 3.42111 3.47759 3.82406 3.85900 4.00302 4.04227 4.10935 4.26012 4.30250 4.33773 4.44880 4.57595 4.60279 4.64670 4.66519 4.75797 4.88426 5.09380 5.15799 5.18124 5.31787 5.43756 5.51713 5.67898 5.77339 5.80213 6.05555 6.61832 6.66679 7.18551 7.31536 7.45352 8.81230 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.021446 B = 0.003500 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.308175 B = 7998.731170 C = 8566.762921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.052 3.948 3 H 0.117 0.883 4 C 0.528 3.472 5 O -0.575 6.575 6 N -0.611 5.611 7 C 0.106 3.894 8 C -0.130 4.130 9 C 0.234 3.766 10 O -0.597 6.597 11 C -0.561 4.561 12 H 0.057 0.943 13 C 0.036 3.964 14 N -0.911 5.911 15 Si 0.962 3.038 16 H -0.273 1.273 17 H -0.274 1.274 18 H -0.282 1.282 19 C 0.128 3.872 20 N -0.543 5.543 21 C 0.021 3.979 22 C 0.014 3.986 23 C 0.448 3.552 24 F -0.192 7.192 25 F -0.182 7.182 26 F -0.190 7.190 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.381 0.619 35 H 0.272 0.728 36 H 0.041 0.959 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.090 0.910 40 H 0.059 0.941 41 H 0.117 0.883 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.228 0.057 17.835 20.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.059 4.059 3 H 0.135 0.865 4 C 0.317 3.683 5 O -0.454 6.454 6 N -0.344 5.344 7 C -0.016 4.016 8 C -0.168 4.168 9 C 0.193 3.807 10 O -0.407 6.407 11 C -0.599 4.599 12 H 0.075 0.925 13 C -0.165 4.165 14 N -0.551 5.551 15 Si 0.788 3.212 16 H -0.197 1.197 17 H -0.199 1.199 18 H -0.207 1.207 19 C 0.005 3.995 20 N -0.267 5.267 21 C -0.125 4.125 22 C -0.115 4.115 23 C 0.393 3.607 24 F -0.174 7.174 25 F -0.163 7.163 26 F -0.172 7.172 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.118 0.882 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.232 0.768 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.108 0.892 40 H 0.077 0.923 41 H 0.134 0.866 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.548 -1.022 18.232 20.606 hybrid contribution 0.110 0.770 -1.663 1.836 sum -9.438 -0.252 16.569 19.070 Atomic orbital electron populations 1.22319 0.91765 1.03816 1.05139 1.22007 0.97023 0.99047 0.87861 0.86508 1.20669 0.77528 0.86417 0.83643 1.90579 1.51707 1.18018 1.85143 1.48632 1.59937 1.15964 1.09830 1.22209 0.99798 0.81693 0.97889 1.23031 0.99758 1.00884 0.93153 1.19846 0.81302 0.88798 0.90726 1.86098 1.38696 1.51288 1.64646 1.21751 1.47916 0.98311 0.91945 0.92466 1.25622 0.93228 0.94451 1.03189 1.69635 1.45688 1.03196 1.36536 0.85446 0.77753 0.78342 0.79689 1.19729 1.19902 1.20749 1.22107 0.96493 0.96703 0.84189 1.61493 1.58725 1.05590 1.00917 1.22644 0.96984 0.89200 1.03685 1.23444 0.95638 0.95215 0.97236 1.21070 0.84671 0.82138 0.72834 1.93072 1.95132 1.73061 1.56143 1.93181 1.96697 1.79179 1.47246 1.93185 1.47228 1.81179 1.95597 0.90250 0.91492 0.88240 0.88915 0.91667 0.91313 0.91118 0.76775 0.91795 0.94014 0.90877 0.91592 0.89175 0.92265 0.86559 0.83170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 8.00 71.98 0.58 -2.44 16 2 C 0.05 1.34 1.99 44.17 0.09 1.42 16 3 H 0.12 3.06 4.39 -2.39 -0.01 3.05 16 4 C 0.53 19.48 7.01 87.66 0.61 20.10 16 5 O -0.57 -24.88 14.59 -3.04 -0.04 -24.92 16 6 N -0.61 -23.92 3.33 -811.79 -2.70 -26.62 16 7 C 0.11 3.62 6.28 86.73 0.54 4.17 16 8 C -0.13 -5.43 5.66 31.87 0.18 -5.25 16 9 C 0.23 11.46 0.89 -10.06 -0.01 11.45 16 10 O -0.60 -31.88 13.18 -148.98 -1.96 -33.84 16 11 C -0.56 -29.50 8.26 25.60 0.21 -29.29 16 12 H 0.06 3.02 7.77 -2.91 -0.02 3.00 16 13 C 0.04 1.83 5.30 84.65 0.45 2.28 16 14 N -0.91 -46.76 10.79 21.45 0.23 -46.53 16 15 Si 0.96 41.02 29.54 68.60 2.03 43.04 16 16 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 17 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 18 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 19 C 0.13 5.88 6.06 86.86 0.53 6.41 16 20 N -0.54 -12.62 4.26 -901.44 -3.84 -16.46 16 21 C 0.02 0.42 8.72 127.69 1.11 1.53 16 22 C 0.01 0.21 5.02 86.30 0.43 0.64 16 23 C 0.45 9.63 3.27 71.98 0.24 9.87 16 24 F -0.19 -4.85 14.56 44.97 0.65 -4.19 16 25 F -0.18 -3.53 17.32 44.97 0.78 -2.75 16 26 F -0.19 -5.32 17.14 44.97 0.77 -4.55 16 27 H 0.08 1.34 6.85 -2.39 -0.02 1.33 16 28 H 0.07 1.25 6.73 -2.39 -0.02 1.23 16 29 H 0.10 1.08 6.71 -2.39 -0.02 1.06 16 30 H 0.09 2.45 6.91 -2.39 -0.02 2.43 16 31 H 0.07 2.15 7.72 -2.39 -0.02 2.14 16 32 H 0.07 2.83 8.04 -2.38 -0.02 2.81 16 33 H 0.07 3.12 7.86 -2.38 -0.02 3.11 16 34 H 0.38 20.49 6.93 -74.06 -0.51 19.97 16 35 H 0.27 13.25 8.31 -92.71 -0.77 12.48 16 36 H 0.04 2.11 8.09 -2.39 -0.02 2.09 16 37 H 0.07 3.24 8.02 -2.39 -0.02 3.22 16 38 H 0.07 1.84 5.97 -2.38 -0.01 1.83 16 39 H 0.09 1.33 7.83 -2.38 -0.02 1.31 16 40 H 0.06 0.87 5.99 -2.39 -0.01 0.85 16 41 H 0.12 1.06 6.57 -2.39 -0.02 1.04 16 42 H 0.15 1.40 7.72 -2.39 -0.02 1.38 16 Total: -1.00 -65.72 340.87 1.44 -64.28 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: 0.56 Total: 31.65 kcal Atomic # 6 Polarization: 15.93 SS G_CDS: 4.96 Total: 20.89 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -6.31 Total: -89.61 kcal Atomic # 8 Polarization: -56.75 SS G_CDS: -2.01 Total: -58.76 kcal Atomic # 9 Polarization: -13.70 SS G_CDS: 2.20 Total: -11.49 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.04 kcal Total: -65.72 1.44 -64.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850476.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.191 kcal (2) G-P(sol) polarization free energy of solvation -65.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds