Wall clock time and date at job start Tue Mar 31 2020 05:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35995 * 116.99601 * 2 1 4 4 C 1.38616 * 120.01002 * 359.97438 * 3 2 1 5 5 C 1.38835 * 120.01883 * 180.02562 * 4 3 2 6 6 N 1.39897 * 119.98660 * 179.72387 * 5 4 3 7 7 C 1.46503 * 120.00170 * 0.02562 * 6 5 4 8 8 C 1.46506 * 120.00051 * 180.02562 * 6 5 4 9 9 C 1.50699 * 109.46977 * 90.00579 * 8 6 5 10 10 O 1.21298 * 120.00177 * 359.97438 * 9 8 6 11 11 N 1.34770 * 120.00144 * 180.02562 * 9 8 6 12 12 C 1.37097 * 120.00289 * 180.02562 * 11 9 8 13 13 H 1.08007 * 119.99994 * 359.97438 * 12 11 9 14 14 C 1.38947 * 120.00262 * 180.02562 * 12 11 9 15 15 N 1.31409 * 120.00026 * 179.97438 * 14 12 11 16 16 Si 1.86807 * 120.00003 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.46785 * 90.00247 * 16 14 12 18 18 H 1.48496 * 109.47058 * 210.00061 * 16 14 12 19 19 H 1.48491 * 109.46902 * 330.00172 * 16 14 12 20 20 C 1.38836 * 120.02714 * 0.02562 * 5 4 3 21 21 C 1.38623 * 120.01707 * 359.97438 * 20 5 4 22 22 O 1.35990 * 120.00361 * 180.02562 * 21 20 5 23 23 C 1.42899 * 117.00464 * 359.97438 * 22 21 20 24 24 C 1.38965 * 120.00427 * 180.02562 * 3 2 1 25 25 O 1.36186 * 120.02085 * 359.97438 * 24 3 2 26 26 C 1.42891 * 117.00206 * 89.99677 * 25 24 3 27 27 H 1.09004 * 109.46957 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47253 * 300.00502 * 1 2 3 29 29 H 1.08996 * 109.47504 * 60.00208 * 1 2 3 30 30 H 1.08004 * 119.99625 * 0.05434 * 4 3 2 31 31 H 1.08999 * 109.47027 * 89.99335 * 7 6 5 32 32 H 1.08996 * 109.46956 * 209.99394 * 7 6 5 33 33 H 1.09001 * 109.46780 * 329.99377 * 7 6 5 34 34 H 1.08997 * 109.47012 * 210.00142 * 8 6 5 35 35 H 1.08993 * 109.47041 * 330.00195 * 8 6 5 36 36 H 0.97001 * 120.00166 * 359.97438 * 11 9 8 37 37 H 0.97007 * 119.99864 * 180.02562 * 15 14 12 38 38 H 1.08003 * 119.98488 * 179.97438 * 20 5 4 39 39 H 1.08996 * 109.47402 * 180.02562 * 23 22 21 40 40 H 1.08997 * 109.46989 * 300.01089 * 23 22 21 41 41 H 1.09000 * 109.46798 * 60.00401 * 23 22 21 42 42 H 1.09002 * 109.47288 * 60.00869 * 26 25 24 43 43 H 1.09005 * 109.47296 * 180.02562 * 26 25 24 44 44 H 1.09003 * 109.47434 * 300.00401 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2915 2.3744 -0.0005 5 6 1.9215 3.6115 -0.0011 6 7 1.1591 4.7845 -0.0075 7 6 -0.3039 4.7072 -0.0130 8 6 1.8236 6.0902 -0.0086 9 6 2.0569 6.5338 -1.4298 10 8 1.7033 5.8285 -2.3511 11 7 2.6593 7.7137 -1.6771 12 6 2.8711 8.1176 -2.9700 13 1 2.5555 7.4899 -3.7904 14 6 3.4926 9.3338 -3.2250 15 7 3.6960 9.7206 -4.4643 16 14 4.0391 10.4191 -1.8062 17 1 5.4311 10.0706 -1.4241 18 1 3.9818 11.8435 -2.2220 19 1 3.1388 10.2059 -0.6447 20 6 3.3079 3.6852 -0.0016 21 6 4.0641 2.5233 -0.0011 22 8 5.4220 2.5958 -0.0011 23 6 6.0022 3.9017 -0.0022 24 6 3.4341 1.2847 -0.0005 25 8 4.1764 0.1429 -0.0005 26 6 4.5294 -0.4013 -1.2737 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 0.2129 2.3179 -0.0001 31 1 -0.6708 4.6908 1.0133 32 1 -0.7116 5.5753 -0.5308 33 1 -0.6177 3.7978 -0.5256 34 1 1.1932 6.8191 0.5007 35 1 2.7795 6.0118 0.5092 36 1 2.9424 8.2776 -0.9404 37 1 4.1303 10.5696 -4.6423 38 1 3.7973 4.6480 -0.0024 39 1 7.0888 3.8166 -0.0025 40 1 5.6799 4.4416 -0.8926 41 1 5.6800 4.4431 0.8873 42 1 5.1159 0.3291 -1.8311 43 1 5.1181 -1.3076 -1.1309 44 1 3.6234 -0.6410 -1.8303 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741795939.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:14 Heat of formation + Delta-G solvation = -117.344879 kcal Electronic energy + Delta-G solvation = -28453.006186 eV Core-core repulsion = 24371.971475 eV Total energy + Delta-G solvation = -4081.034711 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.83429 -40.47106 -39.97049 -38.78326 -38.44380 -36.10508 -35.51287 -33.78252 -31.27326 -30.85033 -29.74874 -28.56485 -27.97826 -27.66755 -26.69125 -25.17501 -22.86925 -22.41333 -21.29322 -20.40029 -19.69382 -18.23281 -18.20017 -17.91858 -17.49201 -17.23556 -17.12490 -16.79963 -16.44056 -15.94515 -15.88088 -15.74261 -15.49214 -15.38076 -15.35133 -14.90383 -14.40501 -14.17771 -13.95006 -13.80483 -13.38893 -13.36379 -13.13769 -12.86013 -12.72056 -12.64670 -12.42941 -12.41168 -12.24411 -12.08955 -12.03495 -11.94236 -11.52617 -10.86338 -10.70172 -10.26905 -9.95258 -9.22149 -8.42589 -8.26829 -6.04112 0.38691 0.39457 1.29832 1.35299 1.44612 1.83780 1.91100 2.02541 2.22437 2.53239 2.70367 2.96194 3.10180 3.13585 3.92241 3.96941 4.06209 4.10044 4.17620 4.28573 4.31081 4.33709 4.39300 4.41500 4.44603 4.47816 4.51468 4.55597 4.66991 4.68713 4.72728 4.74347 4.80012 4.89090 5.06066 5.23396 5.33079 5.51498 5.90955 6.00828 6.12877 6.29640 6.35871 6.57755 6.79731 6.86490 7.36935 7.93413 8.75063 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.015136 B = 0.003703 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.489219 B = 7558.976808 C = 8571.737499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.319 6.319 3 C 0.187 3.813 4 C -0.306 4.306 5 C 0.287 3.713 6 N -0.603 5.603 7 C 0.092 3.908 8 C 0.115 3.885 9 C 0.427 3.573 10 O -0.615 6.615 11 N -0.587 5.587 12 C -0.327 4.327 13 H 0.051 0.949 14 C -0.014 4.014 15 N -0.935 5.935 16 Si 0.963 3.037 17 H -0.256 1.256 18 H -0.278 1.278 19 H -0.226 1.226 20 C -0.314 4.314 21 C 0.182 3.818 22 O -0.318 6.318 23 C 0.019 3.981 24 C -0.061 4.061 25 O -0.326 6.326 26 C 0.031 3.969 27 H 0.124 0.876 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.157 0.843 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.137 0.863 35 H 0.118 0.882 36 H 0.391 0.609 37 H 0.279 0.721 38 H 0.136 0.864 39 H 0.126 0.874 40 H 0.045 0.955 41 H 0.072 0.928 42 H 0.033 0.967 43 H 0.112 0.888 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.579 -12.395 16.834 21.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.231 6.231 3 C 0.139 3.861 4 C -0.330 4.330 5 C 0.182 3.818 6 N -0.310 5.310 7 C -0.050 4.050 8 C -0.012 4.012 9 C 0.214 3.786 10 O -0.499 6.499 11 N -0.229 5.229 12 C -0.457 4.457 13 H 0.069 0.931 14 C -0.213 4.213 15 N -0.575 5.575 16 Si 0.783 3.217 17 H -0.180 1.180 18 H -0.203 1.203 19 H -0.149 1.149 20 C -0.338 4.338 21 C 0.134 3.866 22 O -0.231 6.231 23 C -0.075 4.075 24 C -0.108 4.108 25 O -0.243 6.243 26 C -0.064 4.064 27 H 0.142 0.858 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.175 0.825 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.155 0.845 35 H 0.135 0.865 36 H 0.227 0.773 37 H 0.088 0.912 38 H 0.154 0.846 39 H 0.144 0.856 40 H 0.063 0.937 41 H 0.091 0.909 42 H 0.051 0.949 43 H 0.130 0.870 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.603 -13.008 16.229 21.108 hybrid contribution 0.220 1.451 -0.724 1.636 sum -3.384 -11.557 15.505 19.632 Atomic orbital electron populations 1.23417 0.76175 1.05755 1.02400 1.86113 1.23605 1.25561 1.87841 1.18633 0.90109 0.85003 0.92325 1.20619 1.01007 0.89386 1.21945 1.17348 0.89764 0.86514 0.88174 1.46230 1.05868 1.01745 1.77148 1.21840 0.77529 1.03021 1.02571 1.21397 1.01861 0.86108 0.91875 1.21762 0.81722 0.81923 0.93215 1.90570 1.55516 1.55656 1.48186 1.42045 1.54933 1.19056 1.06835 1.18951 1.38442 1.04390 0.83897 0.93113 1.26132 0.96518 0.98271 1.00331 1.69813 1.42995 1.23237 1.21504 0.85397 0.80233 0.77652 0.78463 1.18047 1.20283 1.14874 1.20607 0.93199 0.97793 1.22161 1.18750 0.82941 0.92359 0.92514 1.86084 1.16487 1.32625 1.87888 1.23350 1.00267 0.81959 1.01916 1.16930 0.87055 0.84671 1.22103 1.86141 1.70520 1.38056 1.29572 1.23077 0.99474 0.98825 0.85004 0.85786 0.91098 0.92220 0.82537 0.89746 0.91889 0.91304 0.84501 0.86456 0.77331 0.91158 0.84621 0.85559 0.93669 0.90905 0.94860 0.86997 0.94186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.32 -8.58 10.27 -79.45 -0.82 -9.40 16 3 C 0.19 5.77 6.69 22.53 0.15 5.92 16 4 C -0.31 -8.74 8.19 22.50 0.18 -8.56 16 5 C 0.29 9.02 6.55 38.14 0.25 9.27 16 6 N -0.60 -17.22 2.50 -726.48 -1.82 -19.04 16 7 C 0.09 2.04 10.19 127.77 1.30 3.35 16 8 C 0.12 3.22 5.63 85.63 0.48 3.70 16 9 C 0.43 18.17 7.85 87.66 0.69 18.86 16 10 O -0.61 -33.19 16.01 -3.09 -0.05 -33.24 16 11 N -0.59 -26.10 5.09 -306.98 -1.56 -27.66 16 12 C -0.33 -18.63 10.16 84.04 0.85 -17.78 16 13 H 0.05 3.50 7.39 -2.91 -0.02 3.48 16 14 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 15 N -0.93 -55.49 13.96 21.66 0.30 -55.19 16 16 Si 0.96 36.97 27.74 68.60 1.90 38.87 16 17 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 18 H -0.28 -10.74 7.11 99.48 0.71 -10.03 16 19 H -0.23 -7.03 6.52 99.48 0.65 -6.38 16 20 C -0.31 -10.30 8.20 22.50 0.18 -10.11 16 21 C 0.18 6.18 6.69 22.54 0.15 6.33 16 22 O -0.32 -10.12 10.27 -79.40 -0.82 -10.93 16 23 C 0.02 0.47 9.81 113.37 1.11 1.58 16 24 C -0.06 -2.09 5.75 22.62 0.13 -1.96 16 25 O -0.33 -10.98 9.98 -71.44 -0.71 -11.69 16 26 C 0.03 0.84 11.13 113.37 1.26 2.10 16 27 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.07 0.96 7.66 -2.38 -0.02 0.94 16 29 H 0.06 0.95 7.66 -2.39 -0.02 0.93 16 30 H 0.16 3.54 4.37 -2.91 -0.01 3.52 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 1.49 8.07 -2.39 -0.02 1.47 16 33 H 0.07 1.48 6.20 -2.39 -0.01 1.46 16 34 H 0.14 2.75 8.07 -2.39 -0.02 2.73 16 35 H 0.12 2.75 6.20 -2.39 -0.01 2.73 16 36 H 0.39 14.00 5.76 -92.71 -0.53 13.47 16 37 H 0.28 15.13 8.31 -92.70 -0.77 14.36 16 38 H 0.14 4.20 4.37 -2.91 -0.01 4.19 16 39 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.04 1.23 7.66 -2.39 -0.02 1.21 16 41 H 0.07 1.49 7.66 -2.39 -0.02 1.47 16 42 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.11 2.32 8.14 -2.38 -0.02 2.30 16 44 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -83.57 366.94 5.21 -78.36 By element: Atomic # 1 Polarization: 35.66 SS G_CDS: 0.45 Total: 36.11 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: 8.33 Total: 13.81 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -3.08 Total: -101.89 kcal Atomic # 8 Polarization: -62.86 SS G_CDS: -2.39 Total: -65.26 kcal Atomic # 14 Polarization: 36.97 SS G_CDS: 1.90 Total: 38.87 kcal Total: -83.57 5.21 -78.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741795939.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.988 kcal (2) G-P(sol) polarization free energy of solvation -83.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds