Wall clock time and date at job start Tue Mar 31 2020 05:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.86678 * 2 1 4 4 O 1.43747 * 109.87899 * 238.83909 * 2 1 3 5 5 C 1.44380 * 106.97573 * 214.06159 * 4 2 1 6 6 C 1.54995 * 103.49057 * 40.05834 * 5 4 2 7 7 C 1.54100 * 109.88005 * 121.00443 * 2 1 3 8 8 H 1.09002 * 110.48824 * 240.26176 * 7 2 1 9 9 C 1.50698 * 110.48641 * 2.77833 * 7 2 1 10 10 O 1.20828 * 119.99684 * 86.51656 * 9 7 2 11 11 O 1.34229 * 120.00239 * 266.51151 * 9 7 2 12 12 C 1.45199 * 116.99978 * 180.02562 * 11 9 7 13 13 C 1.50707 * 109.46733 * 180.02562 * 12 11 9 14 14 O 1.21280 * 120.00246 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99697 * 179.97438 * 13 12 11 16 16 C 1.46493 * 120.00023 * 179.97438 * 15 13 12 17 17 C 1.50706 * 109.47227 * 90.00145 * 16 15 13 18 18 H 1.07997 * 119.99837 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00318 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99783 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99804 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.46943 * 90.00513 * 21 19 17 23 23 H 1.48505 * 109.46650 * 210.00160 * 21 19 17 24 24 H 1.48497 * 109.47290 * 329.99881 * 21 19 17 25 25 C 1.46506 * 120.00187 * 0.02562 * 15 13 12 26 26 C 1.52995 * 109.47369 * 89.99706 * 25 15 13 27 27 C 1.47205 * 109.47038 * 180.02562 * 26 25 15 28 28 N 9.37072 * 58.66268 * 131.21350 * 2 1 3 29 29 H 1.08996 * 109.47293 * 297.00979 * 1 2 3 30 30 H 1.09002 * 109.47187 * 57.01127 * 1 2 3 31 31 H 1.09007 * 109.46907 * 177.01231 * 1 2 3 32 32 H 1.09004 * 110.61259 * 281.56077 * 5 4 2 33 33 H 1.08993 * 110.75171 * 158.62168 * 5 4 2 34 34 H 1.09002 * 110.90956 * 204.78446 * 6 5 4 35 35 H 1.09000 * 110.93780 * 81.18976 * 6 5 4 36 36 H 1.08999 * 109.47293 * 300.00055 * 12 11 9 37 37 H 1.08997 * 109.47222 * 60.00351 * 12 11 9 38 38 H 1.08994 * 109.47662 * 210.00393 * 16 15 13 39 39 H 1.09002 * 109.47617 * 330.00532 * 16 15 13 40 40 H 0.97006 * 119.99897 * 180.02562 * 20 19 17 41 41 H 1.09001 * 109.46473 * 210.00085 * 25 15 13 42 42 H 1.09008 * 109.46755 * 329.99162 * 25 15 13 43 43 H 1.09003 * 109.46749 * 299.99885 * 26 25 15 44 44 H 1.08998 * 109.47506 * 59.99874 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 8 2.0188 -0.6995 -1.1568 5 6 3.2380 -1.3652 -0.7629 6 6 2.9196 -1.8905 0.6601 7 6 2.0540 -0.7465 1.2421 8 1 2.6601 -0.0826 1.8587 9 6 0.9074 -1.3076 2.0430 10 8 0.4542 -2.3938 1.7698 11 8 0.3896 -0.6008 3.0598 12 6 -0.7128 -1.2035 3.7876 13 6 -1.1601 -0.2714 4.8841 14 8 -0.6048 0.7959 5.0369 15 7 -2.1779 -0.6236 5.6944 16 6 -2.6123 0.2821 6.7607 17 6 -3.6832 1.2021 6.2332 18 1 -4.0079 1.1199 5.2065 19 6 -4.2490 2.1479 7.0616 20 7 -3.8540 2.2476 8.3120 21 14 -5.5768 3.2876 6.4078 22 1 -6.9094 2.6670 6.6181 23 1 -5.5152 4.5843 7.1291 24 1 -5.3613 3.5177 4.9567 25 6 -2.8491 -1.9126 5.5095 26 6 -2.1469 -2.9789 6.3524 27 6 -2.8210 -4.2742 6.1662 28 7 -3.3435 -5.2734 6.0209 29 1 -0.3633 0.4667 0.9155 30 1 -0.3634 0.5595 -0.8620 31 1 -0.3633 -1.0263 -0.0536 32 1 4.0685 -0.6597 -0.7348 33 1 3.4612 -2.1925 -1.4365 34 1 3.8333 -2.0206 1.2402 35 1 2.3543 -2.8213 0.6142 36 1 -1.5428 -1.3853 3.1047 37 1 -0.3873 -2.1480 4.2234 38 1 -3.0104 -0.2997 7.5920 39 1 -1.7631 0.8727 7.1043 40 1 -4.2523 2.9128 8.8950 41 1 -3.8897 -1.8286 5.8231 42 1 -2.8084 -2.1959 4.4576 43 1 -1.1063 -3.0628 6.0388 44 1 -2.1875 -2.6957 7.4042 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771074091.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:07 Heat of formation + Delta-G solvation = -136.993194 kcal Electronic energy + Delta-G solvation = -27701.757570 eV Core-core repulsion = 23619.870844 eV Total energy + Delta-G solvation = -4081.886726 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.25096 -39.65461 -38.89907 -36.94523 -36.43015 -35.31129 -33.05556 -32.92610 -31.83121 -30.95117 -29.45522 -27.15170 -26.41697 -24.14355 -23.55621 -22.55500 -22.52475 -20.17294 -18.90167 -18.03524 -17.78544 -17.17542 -16.82501 -16.51383 -16.40022 -16.16241 -15.94477 -15.56761 -14.95538 -14.79228 -14.65296 -14.20566 -13.82879 -13.49352 -13.25543 -12.95556 -12.77056 -12.63750 -12.60037 -12.50782 -12.48022 -12.24103 -12.15710 -11.82360 -11.58360 -11.36273 -11.35494 -11.27383 -11.08551 -11.01145 -10.73229 -10.72506 -10.64370 -10.25192 -10.00148 -9.79075 -9.19308 -8.53114 -8.00528 -6.14958 -4.20012 1.96403 2.26251 2.67640 2.77383 3.06482 3.25450 3.32954 3.36512 3.44957 3.55526 3.98011 4.07406 4.29411 4.36624 4.51406 4.64940 4.74502 4.79160 4.83831 4.91983 4.96874 5.03107 5.09516 5.12730 5.17572 5.20963 5.27861 5.34751 5.39129 5.53265 5.68984 5.69714 5.72618 5.95415 5.97316 6.22233 6.51447 6.79150 7.22338 7.30498 7.53667 7.56265 7.80631 8.05322 8.09355 8.67114 8.85729 9.45859 10.93228 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.011165 B = 0.003361 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.292998 B = 8329.017593 C =10078.225494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.092 3.908 3 H 0.088 0.912 4 O -0.368 6.368 5 C 0.049 3.951 6 C -0.147 4.147 7 C -0.118 4.118 8 H 0.120 0.880 9 C 0.477 3.523 10 O -0.505 6.505 11 O -0.326 6.326 12 C 0.044 3.956 13 C 0.509 3.491 14 O -0.509 6.509 15 N -0.591 5.591 16 C 0.246 3.754 17 C -0.532 4.532 18 H 0.059 0.941 19 C 0.064 3.936 20 N -0.893 5.893 21 Si 0.898 3.102 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.273 1.273 25 C 0.112 3.888 26 C -0.051 4.051 27 C 0.215 3.785 28 N -0.442 5.442 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.039 0.961 39 H 0.049 0.951 40 H 0.265 0.735 41 H 0.100 0.900 42 H 0.075 0.925 43 H 0.105 0.895 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.919 -7.841 -12.401 19.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.034 3.966 3 H 0.106 0.894 4 O -0.287 6.287 5 C -0.028 4.028 6 C -0.184 4.184 7 C -0.137 4.137 8 H 0.138 0.862 9 C 0.319 3.681 10 O -0.393 6.393 11 O -0.241 6.241 12 C -0.033 4.033 13 C 0.294 3.706 14 O -0.383 6.383 15 N -0.325 5.325 16 C 0.128 3.872 17 C -0.571 4.571 18 H 0.077 0.923 19 C -0.139 4.139 20 N -0.531 5.531 21 Si 0.725 3.275 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.198 1.198 25 C -0.014 4.014 26 C -0.092 4.092 27 C -0.103 4.103 28 N -0.119 5.119 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.118 0.882 42 H 0.094 0.906 43 H 0.123 0.877 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.141 -8.939 -12.601 19.650 hybrid contribution -0.617 0.862 0.124 1.068 sum 11.524 -8.077 -12.477 18.808 Atomic orbital electron populations 1.22225 0.93222 1.03858 1.03785 1.22613 0.95829 0.95549 0.82586 0.89410 1.88934 1.39699 1.67626 1.32474 1.23553 0.87770 0.96672 0.94769 1.23269 1.00008 0.98657 0.96489 1.22560 0.94396 0.99812 0.96977 0.86179 1.23188 0.83293 0.83284 0.78317 1.90664 1.60065 1.21510 1.67049 1.86590 1.46907 1.48087 1.42549 1.23016 0.88986 0.96764 0.94533 1.19726 0.81148 0.87141 0.82628 1.90743 1.54657 1.22904 1.69994 1.48162 1.32224 1.17969 1.34114 1.19422 0.96124 0.87983 0.83659 1.21401 1.20439 1.17521 0.97734 0.92266 1.24911 0.97111 0.97075 0.94795 1.69914 1.42561 1.35277 1.05362 0.86498 0.81605 0.80213 0.79145 1.20608 1.21053 1.19831 1.21406 0.98528 0.82462 0.99019 1.19884 0.99335 0.84754 1.05232 1.29072 0.93591 0.94539 0.93079 1.81253 1.09408 1.12213 1.09004 0.90188 0.90788 0.91119 0.91635 0.88373 0.89147 0.88334 0.88448 0.88657 0.94305 0.93332 0.92575 0.88152 0.90642 0.87695 0.86186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 8.41 37.16 0.31 -1.60 16 2 C 0.09 0.91 4.05 -26.16 -0.11 0.81 16 3 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 4 O -0.37 -3.91 11.19 -35.23 -0.39 -4.31 16 5 C 0.05 0.36 7.72 38.21 0.29 0.65 16 6 C -0.15 -1.15 6.65 -24.72 -0.16 -1.31 16 7 C -0.12 -1.13 3.55 -90.24 -0.32 -1.45 16 8 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 9 C 0.48 5.97 4.87 36.00 0.18 6.15 16 10 O -0.50 -7.12 14.77 -18.75 -0.28 -7.40 16 11 O -0.33 -4.70 9.32 -45.90 -0.43 -5.13 16 12 C 0.04 0.61 4.50 36.01 0.16 0.77 16 13 C 0.51 9.18 7.75 -10.98 -0.09 9.09 16 14 O -0.51 -11.61 16.08 -14.10 -0.23 -11.84 16 15 N -0.59 -10.36 2.46 -175.06 -0.43 -10.79 16 16 C 0.25 5.60 5.16 -5.19 -0.03 5.58 16 17 C -0.53 -13.81 9.39 -34.44 -0.32 -14.13 16 18 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -24.90 13.29 55.43 0.74 -24.16 16 21 Si 0.90 20.82 29.54 -169.99 -5.02 15.79 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 25 C 0.11 1.42 5.17 -4.04 -0.02 1.40 16 26 C -0.05 -0.51 6.03 -29.52 -0.18 -0.68 16 27 C 0.22 2.58 15.44 -20.73 -0.32 2.26 16 28 N -0.44 -6.51 18.54 42.19 0.78 -5.72 16 29 H 0.08 0.94 7.17 -51.93 -0.37 0.57 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.87 7.05 -51.92 -0.37 0.50 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.10 0.93 6.90 -51.93 -0.36 0.57 16 36 H 0.10 1.21 7.39 -51.93 -0.38 0.83 16 37 H 0.10 1.06 7.18 -51.93 -0.37 0.68 16 38 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 39 H 0.05 1.27 7.42 -51.93 -0.39 0.88 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.10 1.34 8.07 -51.93 -0.42 0.93 16 42 H 0.08 0.81 6.44 -51.92 -0.33 0.47 16 43 H 0.11 0.85 7.22 -51.93 -0.38 0.48 16 44 H 0.12 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 376.68 15.07 5.68 5.68 Total: -1.00 -34.03 376.68 -6.57 -40.60 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -6.29 Total: -1.86 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: -0.70 Total: 9.13 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 1.09 Total: -40.67 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -1.33 Total: -28.67 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.03 -6.57 -40.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771074091.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.390 kcal (2) G-P(sol) polarization free energy of solvation -34.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds