Wall clock time and date at job start Tue Mar 31 2020 04:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47104 * 2 1 4 4 H 1.09004 * 109.47514 * 55.00066 * 3 2 1 5 5 C 1.50704 * 109.47129 * 174.99777 * 3 2 1 6 6 H 1.08000 * 120.00192 * 120.00347 * 5 3 2 7 7 C 1.37879 * 119.99838 * 299.99658 * 5 3 2 8 8 N 1.31513 * 119.99643 * 179.97438 * 7 5 3 9 9 Si 1.86797 * 120.00112 * 0.02562 * 7 5 3 10 10 H 1.48491 * 109.47729 * 89.99458 * 9 7 5 11 11 H 1.48497 * 109.46877 * 209.99663 * 9 7 5 12 12 H 1.48503 * 109.46983 * 329.99083 * 9 7 5 13 13 O 1.45201 * 109.47426 * 294.99671 * 3 2 1 14 14 C 1.34232 * 116.99572 * 89.99720 * 13 3 2 15 15 O 1.20823 * 120.00328 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99669 * 180.02562 * 14 13 3 17 17 N 1.46497 * 109.47207 * 180.02562 * 16 14 13 18 18 C 1.33790 * 124.18079 * 270.03973 * 17 16 14 19 19 O 1.21545 * 123.76510 * 359.97438 * 18 17 16 20 20 N 1.34522 * 112.46288 * 179.97438 * 18 17 16 21 21 C 1.47317 * 106.61690 * 0.02562 * 20 18 17 22 22 C 1.52997 * 110.59866 * 241.46984 * 21 20 18 23 23 C 1.52999 * 110.72892 * 118.58928 * 21 20 18 24 24 C 1.52998 * 117.50078 * 137.36846 * 23 21 20 25 25 C 1.53000 * 117.50377 * 68.70716 * 23 21 20 26 26 C 1.34775 * 124.17755 * 89.99971 * 17 16 14 27 27 O 1.21227 * 127.15621 * 0.07508 * 26 17 16 28 28 H 1.09004 * 109.47110 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47242 * 300.00091 * 1 2 3 30 30 H 1.09001 * 109.47253 * 60.00139 * 1 2 3 31 31 H 1.08998 * 109.47242 * 239.99909 * 2 1 3 32 32 H 1.09003 * 109.46548 * 120.00096 * 2 1 3 33 33 H 0.96997 * 119.99921 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.47449 * 59.99989 * 16 14 13 35 35 H 1.09004 * 109.47381 * 299.99986 * 16 14 13 36 36 H 0.96998 * 126.69250 * 180.02562 * 20 18 17 37 37 H 1.09002 * 109.47153 * 174.87386 * 22 21 20 38 38 H 1.09001 * 109.46832 * 54.87577 * 22 21 20 39 39 H 1.09004 * 109.47261 * 294.87559 * 22 21 20 40 40 H 1.09008 * 115.54984 * 283.03956 * 23 21 20 41 41 H 1.09003 * 117.49933 * 359.97438 * 24 23 21 42 42 H 1.08997 * 117.49892 * 145.01717 * 24 23 21 43 43 H 1.08993 * 117.50233 * 214.98006 * 25 23 21 44 44 H 1.09007 * 117.49430 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1472 1.8888 -0.6522 7 6 4.1432 0.8784 1.2281 8 7 5.4539 0.8796 1.3360 9 14 3.0962 0.1089 2.5702 10 1 2.8753 -1.3271 2.2636 11 1 3.7935 0.2349 3.8752 12 1 1.7876 0.8075 2.6388 13 8 1.6559 2.0916 -1.2407 14 6 0.4727 2.7254 -1.2560 15 8 -0.2189 2.7376 -0.2653 16 6 0.0070 3.4216 -2.5087 17 7 -1.3030 4.0323 -2.2698 18 6 -2.4704 3.4135 -2.4803 19 8 -2.5664 2.2747 -2.8941 20 7 -3.5260 4.1925 -2.1827 21 6 -2.9817 5.4811 -1.7208 22 6 -3.4028 5.7564 -0.2758 23 6 -3.4334 6.6197 -2.6375 24 6 -3.8805 7.9246 -1.9757 25 6 -4.9159 6.9975 -2.6170 26 6 -1.4811 5.2866 -1.8101 27 8 -0.6202 6.0923 -1.5283 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 5.8769 0.4818 2.1129 34 1 -0.0719 2.6970 -3.3192 35 1 0.7240 4.1958 -2.7821 36 1 -4.4628 3.9525 -2.2577 37 1 -2.9174 6.6663 0.0770 38 1 -3.1061 4.9183 0.3549 39 1 -4.4847 5.8805 -0.2300 40 1 -2.9087 6.6925 -3.5902 41 1 -3.8532 7.9719 -0.8870 42 1 -3.6502 8.8560 -2.4930 43 1 -5.3664 7.3192 -3.5559 44 1 -5.5695 6.4345 -1.9506 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787086597.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:38:17 Heat of formation + Delta-G solvation = -89.637781 kcal Electronic energy + Delta-G solvation = -28895.624585 eV Core-core repulsion = 24815.791343 eV Total energy + Delta-G solvation = -4079.833242 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.81959 -39.90472 -38.89413 -38.25717 -36.28905 -35.92329 -34.54078 -33.63395 -31.93571 -30.48811 -29.24649 -27.68692 -25.89665 -23.40236 -23.19233 -22.86784 -22.25071 -20.79038 -20.22260 -19.74498 -18.14998 -17.86899 -17.15779 -16.86506 -16.56038 -16.08802 -15.85161 -15.75895 -15.57105 -15.27661 -14.80995 -14.38068 -14.12581 -13.76022 -13.53087 -13.05251 -12.95807 -12.84165 -12.68449 -12.20360 -12.15508 -11.93824 -11.76304 -11.73149 -11.48446 -11.39711 -11.23207 -11.01217 -10.78250 -10.66228 -10.53192 -10.24242 -10.05224 -9.84301 -9.72268 -9.64544 -9.45176 -9.10048 -8.66903 -6.24133 -4.26634 1.45553 1.84363 2.66947 2.70916 2.83515 3.17903 3.20613 3.29971 3.32649 3.48549 3.77828 3.99308 4.22516 4.25279 4.40724 4.54363 4.75332 4.81929 5.03282 5.05171 5.07474 5.17304 5.22987 5.23887 5.37402 5.40271 5.47012 5.54962 5.62904 5.74287 5.83163 5.91859 5.99433 6.41850 6.54485 6.57952 6.66650 6.73603 6.82986 7.02827 7.18544 7.32193 7.48242 7.93388 8.16147 8.50745 8.82723 9.32562 10.87811 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.022765 B = 0.003354 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.674201 B = 8347.017190 C = 8630.773018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.148 4.148 3 C 0.199 3.801 4 H 0.047 0.953 5 C -0.526 4.526 6 H 0.088 0.912 7 C 0.081 3.919 8 N -0.887 5.887 9 Si 0.877 3.123 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.261 1.261 13 O -0.335 6.335 14 C 0.442 3.558 15 O -0.509 6.509 16 C 0.123 3.877 17 N -0.563 5.563 18 C 0.710 3.290 19 O -0.537 6.537 20 N -0.716 5.716 21 C 0.156 3.844 22 C -0.154 4.154 23 C -0.159 4.159 24 C -0.163 4.163 25 C -0.166 4.166 26 C 0.538 3.462 27 O -0.452 6.452 28 H 0.042 0.958 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.270 0.730 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.438 0.562 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.114 0.886 41 H 0.107 0.893 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.907 12.054 -8.321 26.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.185 4.185 3 C 0.145 3.855 4 H 0.064 0.936 5 C -0.563 4.563 6 H 0.106 0.894 7 C -0.123 4.123 8 N -0.524 5.524 9 Si 0.706 3.294 10 H -0.199 1.199 11 H -0.216 1.216 12 H -0.186 1.186 13 O -0.249 6.249 14 C 0.283 3.717 15 O -0.398 6.398 16 C 0.000 4.000 17 N -0.309 5.309 18 C 0.411 3.589 19 O -0.409 6.409 20 N -0.380 5.380 21 C 0.066 3.934 22 C -0.211 4.211 23 C -0.179 4.179 24 C -0.200 4.200 25 C -0.203 4.203 26 C 0.324 3.676 27 O -0.319 6.319 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.283 0.717 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.132 0.868 41 H 0.125 0.875 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -21.342 11.756 -7.961 25.633 hybrid contribution -0.776 -0.772 0.843 1.382 sum -22.118 10.984 -7.118 25.700 Atomic orbital electron populations 1.21881 0.96838 1.00105 1.01741 1.22365 0.94413 0.99459 1.02298 1.21025 0.96398 0.88094 0.79960 0.93576 1.20784 0.87580 1.40014 1.07959 0.89360 1.24721 0.94949 0.95242 0.97342 1.69831 1.08462 1.44261 1.29797 0.86999 0.80970 0.80172 0.81301 1.19869 1.21640 1.18602 1.86483 1.33503 1.62128 1.42836 1.23390 0.81285 0.77441 0.89626 1.90620 1.55462 1.58256 1.35456 1.21051 0.82433 1.00421 0.96048 1.45934 1.07667 1.15530 1.61814 1.15750 0.80745 0.84315 0.78105 1.91034 1.84937 1.15275 1.49688 1.45539 1.08335 1.13624 1.70489 1.20789 0.90544 0.85169 0.96944 1.22136 1.02870 1.04339 0.91797 1.22215 0.99438 0.95500 1.00719 1.23177 1.02074 0.93430 1.01327 1.22999 0.90631 1.03256 1.03377 1.20649 0.90938 0.81053 0.74982 1.90819 1.49299 1.47017 1.44758 0.93890 0.92796 0.93437 0.91072 0.91768 0.92020 0.84549 0.84606 0.71737 0.89391 0.90522 0.90204 0.86751 0.87481 0.87954 0.88058 0.88288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 8.57 37.16 0.32 -2.76 16 2 C -0.15 -3.42 5.14 -26.74 -0.14 -3.56 16 3 C 0.20 5.04 1.84 -27.88 -0.05 4.99 16 4 H 0.05 1.24 6.21 -51.93 -0.32 0.92 16 5 C -0.53 -15.12 9.48 -34.44 -0.33 -15.44 16 6 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 7 C 0.08 2.33 5.45 -17.82 -0.10 2.24 16 8 N -0.89 -26.76 13.96 55.43 0.77 -25.99 16 9 Si 0.88 21.84 24.41 -169.99 -4.15 17.69 16 10 H -0.27 -6.51 6.83 56.52 0.39 -6.12 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.26 -6.43 6.53 56.52 0.37 -6.07 16 13 O -0.33 -7.60 9.81 -39.26 -0.39 -7.98 16 14 C 0.44 8.79 6.48 36.01 0.23 9.03 16 15 O -0.51 -11.18 13.57 -18.75 -0.25 -11.43 16 16 C 0.12 1.81 6.29 -5.20 -0.03 1.77 16 17 N -0.56 -7.91 2.09 -122.02 -0.26 -8.16 16 18 C 0.71 9.74 8.62 -88.03 -0.76 8.98 16 19 O -0.54 -9.04 17.48 5.33 0.09 -8.95 16 20 N -0.72 -6.75 5.91 -52.94 -0.31 -7.06 16 21 C 0.16 1.44 1.19 -132.09 -0.16 1.28 16 22 C -0.15 -1.22 7.60 37.16 0.28 -0.94 16 23 C -0.16 -1.09 5.41 -90.62 -0.49 -1.58 16 24 C -0.16 -0.87 9.70 -26.70 -0.26 -1.13 16 25 C -0.17 -0.74 9.88 -26.69 -0.26 -1.01 16 26 C 0.54 7.12 6.98 -10.55 -0.07 7.05 16 27 O -0.45 -7.07 17.76 5.60 0.10 -6.97 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.05 1.15 7.80 -51.93 -0.40 0.75 16 30 H 0.05 0.98 6.06 -51.93 -0.31 0.67 16 31 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 32 H 0.06 1.53 3.21 -51.93 -0.17 1.36 16 33 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.14 1.71 7.86 -51.93 -0.41 1.30 16 35 H 0.14 1.69 8.00 -51.93 -0.42 1.27 16 36 H 0.44 2.94 8.96 -40.82 -0.37 2.58 16 37 H 0.09 0.68 6.95 -51.93 -0.36 0.32 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.41 6.94 -51.93 -0.36 0.05 16 40 H 0.11 0.82 8.14 -51.92 -0.42 0.40 16 41 H 0.11 0.54 6.03 -51.93 -0.31 0.23 16 42 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.10 0.36 7.29 -51.92 -0.38 -0.02 16 LS Contribution 358.63 15.07 5.40 5.40 Total: -1.00 -35.44 358.63 -6.75 -42.19 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.95 Total: 2.36 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: -1.81 Total: 8.90 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.21 Total: -41.21 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -0.45 Total: -35.33 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.15 Total: 17.69 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.44 -6.75 -42.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787086597.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.443 kcal (2) G-P(sol) polarization free energy of solvation -35.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds