Wall clock time and date at job start Tue Mar 31 2020 04:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47420 * 2 1 4 4 H 1.08999 * 109.47161 * 305.58723 * 3 2 1 5 5 C 1.50696 * 109.47172 * 185.58476 * 3 2 1 6 6 H 1.07996 * 120.00127 * 274.99561 * 5 3 2 7 7 C 1.37884 * 119.99792 * 94.99712 * 5 3 2 8 8 N 1.31516 * 119.99718 * 184.84202 * 7 5 3 9 9 Si 1.86796 * 120.00109 * 4.83776 * 7 5 3 10 10 H 1.48501 * 109.47008 * 84.86732 * 9 7 5 11 11 H 1.48493 * 109.47182 * 204.87020 * 9 7 5 12 12 H 1.48508 * 109.47147 * 324.87052 * 9 7 5 13 13 O 1.45203 * 109.46716 * 65.58610 * 3 2 1 14 14 C 1.34233 * 116.99813 * 269.99858 * 13 3 2 15 15 O 1.20819 * 120.00206 * 0.02562 * 14 13 3 16 16 C 1.50697 * 119.99698 * 180.02562 * 14 13 3 17 17 N 1.46505 * 109.47072 * 180.02562 * 16 14 13 18 18 C 1.33796 * 124.17414 * 269.95390 * 17 16 14 19 19 O 1.21538 * 123.77162 * 0.02562 * 18 17 16 20 20 N 1.34523 * 112.45817 * 180.02562 * 18 17 16 21 21 C 1.47319 * 106.61992 * 359.97438 * 20 18 17 22 22 C 1.52994 * 110.59969 * 241.47736 * 21 20 18 23 23 C 1.52994 * 110.72675 * 118.58750 * 21 20 18 24 24 C 1.53003 * 117.49678 * 137.36966 * 23 21 20 25 25 C 1.53000 * 117.49727 * 68.71347 * 23 21 20 26 26 C 1.34762 * 124.18137 * 89.99767 * 17 16 14 27 27 O 1.21237 * 127.15830 * 359.97438 * 26 17 16 28 28 H 1.08999 * 109.47073 * 300.00209 * 1 2 3 29 29 H 1.09003 * 109.46720 * 59.99982 * 1 2 3 30 30 H 1.09001 * 109.47250 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47073 * 239.99790 * 2 1 3 32 32 H 1.09003 * 109.46720 * 120.00018 * 2 1 3 33 33 H 0.96999 * 119.99620 * 179.97438 * 8 7 5 34 34 H 1.08993 * 109.47537 * 59.99775 * 16 14 13 35 35 H 1.09005 * 109.47393 * 299.99672 * 16 14 13 36 36 H 0.96992 * 126.69381 * 180.02562 * 20 18 17 37 37 H 1.09000 * 109.46677 * 174.87642 * 22 21 20 38 38 H 1.08998 * 109.47529 * 54.87307 * 22 21 20 39 39 H 1.09007 * 109.47149 * 294.86612 * 22 21 20 40 40 H 1.09000 * 115.55679 * 283.04211 * 23 21 20 41 41 H 1.08998 * 117.49609 * 0.02562 * 24 23 21 42 42 H 1.09006 * 117.49911 * 145.01734 * 24 23 21 43 43 H 1.09002 * 117.49962 * 214.97595 * 25 23 21 44 44 H 1.09000 * 117.50081 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5974 1.9844 -0.8357 5 6 3.5407 1.4446 -0.1383 6 1 4.1638 1.3338 0.7368 7 6 4.1182 1.5882 -1.3821 8 7 5.4232 1.4949 -1.5159 9 14 3.0470 1.9151 -2.8771 10 1 2.7811 3.3720 -2.9865 11 1 3.7473 1.4465 -4.0998 12 1 1.7609 1.1866 -2.7333 13 8 1.6680 2.0873 1.2466 14 6 0.4850 2.7211 1.2754 15 8 -0.2164 2.7361 0.2918 16 6 0.0319 3.4139 2.5346 17 7 -1.2810 4.0242 2.3108 18 6 -1.4633 5.2708 1.8602 19 8 -0.5545 6.0304 1.5878 20 7 -2.7649 5.5894 1.7423 21 6 -3.5291 4.4041 2.1681 22 6 -4.3903 3.8774 1.0185 23 6 -4.3980 4.7284 3.3849 24 6 -5.8276 4.1832 3.3976 25 6 -5.5799 5.6774 3.1762 26 6 -2.4542 3.3999 2.5341 27 8 -2.6163 2.2698 2.9422 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.8294 1.5955 -2.3909 34 1 0.7515 4.1872 2.8030 35 1 -0.0391 2.6870 3.3439 36 1 -3.1293 6.4345 1.4360 37 1 -4.8764 2.9508 1.3238 38 1 -3.7601 3.6879 0.1496 39 1 -5.1482 4.6182 0.7632 40 1 -3.8715 4.7824 4.3378 41 1 -6.1487 3.5931 2.5393 42 1 -6.2416 3.8787 4.3589 43 1 -5.8311 6.3554 3.9919 44 1 -5.7381 6.0710 2.1721 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787086598.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:38:20 Heat of formation + Delta-G solvation = -98.537196 kcal Electronic energy + Delta-G solvation = -28949.911584 eV Core-core repulsion = 24869.692435 eV Total energy + Delta-G solvation = -4080.219149 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.79335 -39.81329 -38.87016 -38.24166 -36.19624 -35.87744 -34.50470 -33.42467 -32.01167 -30.47449 -29.20091 -27.70447 -25.88488 -23.37946 -23.22717 -22.89732 -22.20053 -20.58331 -20.18558 -19.61419 -18.13233 -17.88735 -17.16451 -16.95952 -16.47891 -16.02133 -15.79188 -15.76566 -15.51973 -15.23505 -14.74220 -14.24486 -14.09200 -13.74347 -13.41925 -13.03773 -12.96141 -12.75229 -12.66787 -12.20283 -12.12208 -12.04780 -11.74787 -11.68802 -11.38848 -11.36965 -11.01216 -10.99963 -10.82598 -10.64069 -10.49411 -10.23796 -10.17727 -9.93058 -9.74321 -9.60341 -9.36072 -9.08997 -8.71541 -6.29213 -4.33089 1.46595 1.87609 2.71868 2.76820 2.86618 3.20883 3.21644 3.28732 3.34482 3.54830 3.79342 3.99896 4.23208 4.25522 4.40925 4.54532 4.77403 4.83378 4.99610 5.03690 5.14480 5.19582 5.23417 5.27132 5.37397 5.47666 5.51252 5.56097 5.62717 5.74099 5.90085 5.97017 6.04411 6.40561 6.58184 6.62224 6.77716 6.79673 6.86335 7.14379 7.19567 7.33197 7.49263 7.97462 8.19057 8.54589 8.81359 9.29867 10.81945 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.022044 B = 0.003504 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.875719 B = 7988.606515 C = 8263.566161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 C 0.189 3.811 4 H 0.048 0.952 5 C -0.519 4.519 6 H 0.087 0.913 7 C 0.084 3.916 8 N -0.880 5.880 9 Si 0.867 3.133 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.260 1.260 13 O -0.341 6.341 14 C 0.440 3.560 15 O -0.513 6.513 16 C 0.121 3.879 17 N -0.562 5.562 18 C 0.709 3.291 19 O -0.533 6.533 20 N -0.717 5.717 21 C 0.156 3.844 22 C -0.153 4.153 23 C -0.159 4.159 24 C -0.163 4.163 25 C -0.165 4.165 26 C 0.539 3.461 27 O -0.456 6.456 28 H 0.042 0.958 29 H 0.051 0.949 30 H 0.041 0.959 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.271 0.729 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.438 0.562 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.114 0.886 41 H 0.107 0.893 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.463 7.091 9.826 26.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C 0.136 3.864 4 H 0.066 0.934 5 C -0.556 4.556 6 H 0.105 0.895 7 C -0.121 4.121 8 N -0.516 5.516 9 Si 0.693 3.307 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.184 1.184 13 O -0.257 6.257 14 C 0.281 3.719 15 O -0.403 6.403 16 C -0.002 4.002 17 N -0.309 5.309 18 C 0.409 3.591 19 O -0.406 6.406 20 N -0.381 5.381 21 C 0.065 3.935 22 C -0.211 4.211 23 C -0.178 4.178 24 C -0.200 4.200 25 C -0.203 4.203 26 C 0.325 3.675 27 O -0.323 6.323 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.155 0.845 35 H 0.151 0.849 36 H 0.283 0.717 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.132 0.868 41 H 0.125 0.875 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -22.927 6.780 9.462 25.713 hybrid contribution -0.498 0.555 -1.135 1.358 sum -23.425 7.335 8.327 25.920 Atomic orbital electron populations 1.21914 0.97448 0.99847 1.01427 1.22097 0.93574 0.98764 1.02452 1.21093 0.96162 0.88816 0.80299 0.93444 1.20793 0.87760 1.51280 0.95775 0.89522 1.24900 0.94964 0.93620 0.98605 1.69850 1.09484 1.47534 1.24719 0.86983 0.81240 0.79957 0.82486 1.19527 1.20664 1.18424 1.86654 1.33209 1.62046 1.43745 1.23418 0.81553 0.77357 0.89533 1.90605 1.55166 1.58427 1.36134 1.21108 0.82845 1.00181 0.96031 1.45939 1.08448 1.14769 1.61699 1.15768 0.84236 0.81443 0.77607 1.91051 1.43569 1.52293 1.53662 1.45541 1.04682 1.16896 1.70947 1.20784 0.91988 0.84844 0.95862 1.22129 0.99818 1.02568 0.96585 1.22216 0.90481 1.07597 0.97555 1.23173 0.96026 0.96469 1.04371 1.22999 1.00404 0.93315 1.03536 1.20634 0.83764 0.87252 0.75852 1.90800 1.83847 1.16177 1.41511 0.93879 0.92971 0.94001 0.90982 0.91800 0.91920 0.84493 0.84879 0.71732 0.89458 0.90533 0.90210 0.86769 0.87513 0.87986 0.88053 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 8.57 37.16 0.32 -2.67 16 2 C -0.13 -2.92 5.63 -26.73 -0.15 -3.07 16 3 C 0.19 4.77 1.90 -27.89 -0.05 4.71 16 4 H 0.05 1.27 4.31 -51.93 -0.22 1.04 16 5 C -0.52 -14.80 9.25 -34.44 -0.32 -15.12 16 6 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 7 C 0.08 2.41 5.47 -17.82 -0.10 2.32 16 8 N -0.88 -26.32 13.96 55.43 0.77 -25.55 16 9 Si 0.87 21.79 26.99 -169.99 -4.59 17.20 16 10 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.26 -6.36 6.82 56.52 0.39 -5.97 16 13 O -0.34 -7.86 9.81 -39.27 -0.39 -8.24 16 14 C 0.44 8.97 6.51 36.00 0.23 9.21 16 15 O -0.51 -11.52 13.57 -18.74 -0.25 -11.78 16 16 C 0.12 1.83 6.29 -5.19 -0.03 1.80 16 17 N -0.56 -8.14 2.09 -122.02 -0.26 -8.40 16 18 C 0.71 10.28 8.62 -88.02 -0.76 9.52 16 19 O -0.53 -9.65 17.48 5.33 0.09 -9.56 16 20 N -0.72 -7.13 5.91 -52.94 -0.31 -7.44 16 21 C 0.16 1.46 1.19 -132.09 -0.16 1.31 16 22 C -0.15 -1.23 7.61 37.15 0.28 -0.95 16 23 C -0.16 -1.11 5.41 -90.62 -0.49 -1.60 16 24 C -0.16 -0.88 9.70 -26.69 -0.26 -1.13 16 25 C -0.17 -0.77 9.88 -26.69 -0.26 -1.03 16 26 C 0.54 7.14 6.98 -10.56 -0.07 7.06 16 27 O -0.46 -6.93 17.76 5.59 0.10 -6.83 16 28 H 0.04 0.86 6.04 -51.93 -0.31 0.55 16 29 H 0.05 1.09 7.83 -51.93 -0.41 0.69 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 32 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 33 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.14 1.86 7.86 -51.93 -0.41 1.46 16 35 H 0.13 1.65 8.00 -51.93 -0.42 1.23 16 36 H 0.44 3.18 8.96 -40.82 -0.37 2.82 16 37 H 0.09 0.67 6.95 -51.93 -0.36 0.31 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.43 6.94 -51.93 -0.36 0.07 16 40 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.11 0.53 6.03 -51.93 -0.31 0.22 16 42 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.10 0.37 7.29 -51.93 -0.38 0.00 16 LS Contribution 365.19 15.07 5.50 5.50 Total: -1.00 -35.34 365.19 -7.22 -42.56 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -6.08 Total: 2.20 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: -1.82 Total: 10.34 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.21 Total: -41.39 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -0.45 Total: -36.42 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.59 Total: 17.20 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.34 -7.22 -42.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787086598.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.977 kcal (2) G-P(sol) polarization free energy of solvation -35.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds