Wall clock time and date at job start Tue Mar 31 2020 04:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47420 * 2 1 4 4 H 1.08999 * 109.47161 * 305.58723 * 3 2 1 5 5 C 1.50696 * 109.47172 * 185.58476 * 3 2 1 6 6 H 1.07996 * 120.00127 * 274.99561 * 5 3 2 7 7 C 1.37884 * 119.99792 * 94.99712 * 5 3 2 8 8 N 1.31516 * 119.99718 * 184.84202 * 7 5 3 9 9 Si 1.86796 * 120.00109 * 4.83776 * 7 5 3 10 10 H 1.48501 * 109.47008 * 84.86732 * 9 7 5 11 11 H 1.48493 * 109.47182 * 204.87020 * 9 7 5 12 12 H 1.48508 * 109.47147 * 324.87052 * 9 7 5 13 13 O 1.45203 * 109.46716 * 65.58610 * 3 2 1 14 14 C 1.34233 * 116.99813 * 269.99858 * 13 3 2 15 15 O 1.20819 * 120.00206 * 0.02562 * 14 13 3 16 16 C 1.50697 * 119.99698 * 180.02562 * 14 13 3 17 17 N 1.46505 * 109.47072 * 180.02562 * 16 14 13 18 18 C 1.33796 * 124.17414 * 269.95390 * 17 16 14 19 19 O 1.21538 * 123.77162 * 0.02562 * 18 17 16 20 20 N 1.34523 * 112.45817 * 180.02562 * 18 17 16 21 21 C 1.47319 * 106.61992 * 359.97438 * 20 18 17 22 22 C 1.52994 * 110.59969 * 241.47736 * 21 20 18 23 23 C 1.52994 * 110.72675 * 118.58750 * 21 20 18 24 24 C 1.53003 * 117.49678 * 137.36966 * 23 21 20 25 25 C 1.53000 * 117.49727 * 68.71347 * 23 21 20 26 26 C 1.34762 * 124.18137 * 89.99767 * 17 16 14 27 27 O 1.21237 * 127.15830 * 359.97438 * 26 17 16 28 28 H 1.08999 * 109.47073 * 300.00209 * 1 2 3 29 29 H 1.09003 * 109.46720 * 59.99982 * 1 2 3 30 30 H 1.09001 * 109.47250 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47073 * 239.99790 * 2 1 3 32 32 H 1.09003 * 109.46720 * 120.00018 * 2 1 3 33 33 H 0.96999 * 119.99620 * 179.97438 * 8 7 5 34 34 H 1.08993 * 109.47537 * 59.99775 * 16 14 13 35 35 H 1.09005 * 109.47393 * 299.99672 * 16 14 13 36 36 H 0.96992 * 126.69381 * 180.02562 * 20 18 17 37 37 H 1.09000 * 109.46677 * 174.87642 * 22 21 20 38 38 H 1.08998 * 109.47529 * 54.87307 * 22 21 20 39 39 H 1.09007 * 109.47149 * 294.86612 * 22 21 20 40 40 H 1.09000 * 115.55679 * 283.04211 * 23 21 20 41 41 H 1.08998 * 117.49609 * 0.02562 * 24 23 21 42 42 H 1.09006 * 117.49911 * 145.01734 * 24 23 21 43 43 H 1.09002 * 117.49962 * 214.97595 * 25 23 21 44 44 H 1.09000 * 117.50081 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5974 1.9844 -0.8357 5 6 3.5407 1.4446 -0.1383 6 1 4.1638 1.3338 0.7368 7 6 4.1182 1.5882 -1.3821 8 7 5.4232 1.4949 -1.5159 9 14 3.0470 1.9151 -2.8771 10 1 2.7811 3.3720 -2.9865 11 1 3.7473 1.4465 -4.0998 12 1 1.7609 1.1866 -2.7333 13 8 1.6680 2.0873 1.2466 14 6 0.4850 2.7211 1.2754 15 8 -0.2164 2.7361 0.2918 16 6 0.0319 3.4139 2.5346 17 7 -1.2810 4.0242 2.3108 18 6 -1.4633 5.2708 1.8602 19 8 -0.5545 6.0304 1.5878 20 7 -2.7649 5.5894 1.7423 21 6 -3.5291 4.4041 2.1681 22 6 -4.3903 3.8774 1.0185 23 6 -4.3980 4.7284 3.3849 24 6 -5.8276 4.1832 3.3976 25 6 -5.5799 5.6774 3.1762 26 6 -2.4542 3.3999 2.5341 27 8 -2.6163 2.2698 2.9422 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.8294 1.5955 -2.3909 34 1 0.7515 4.1872 2.8030 35 1 -0.0391 2.6870 3.3439 36 1 -3.1293 6.4345 1.4360 37 1 -4.8764 2.9508 1.3238 38 1 -3.7601 3.6879 0.1496 39 1 -5.1482 4.6182 0.7632 40 1 -3.8715 4.7824 4.3378 41 1 -6.1487 3.5931 2.5393 42 1 -6.2416 3.8787 4.3589 43 1 -5.8311 6.3554 3.9919 44 1 -5.7381 6.0710 2.1721 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787086598.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:38:20 Heat of formation + Delta-G solvation = -122.621850 kcal Electronic energy + Delta-G solvation = -28950.955973 eV Core-core repulsion = 24869.692435 eV Total energy + Delta-G solvation = -4081.263538 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.82025 -41.49406 -39.93621 -39.03085 -37.86835 -37.02023 -35.56252 -35.36591 -33.99657 -31.22636 -30.56378 -29.57242 -26.67023 -25.09092 -24.34452 -23.75209 -23.18220 -21.96563 -21.29816 -20.99931 -19.64104 -19.16022 -18.76723 -18.15636 -17.74843 -17.43654 -17.26254 -16.72127 -16.66510 -16.55221 -16.06680 -15.53963 -15.19323 -15.01579 -14.88882 -14.50448 -14.44448 -14.04717 -13.66450 -13.58820 -13.50127 -13.29540 -13.16001 -12.99720 -12.84486 -12.65085 -12.32396 -12.11712 -12.09983 -11.92780 -11.86477 -11.68759 -11.41856 -11.27300 -11.19183 -11.05301 -10.99023 -10.85398 -10.56494 -8.51114 -6.60132 0.42646 0.78544 1.11986 1.20773 1.24542 1.34258 1.58794 1.96361 2.10742 2.15366 2.56468 2.85733 3.07209 3.37427 3.55604 3.65684 3.74699 3.95345 4.03009 4.10840 4.12369 4.14794 4.19763 4.27576 4.32571 4.37283 4.52199 4.60013 4.65662 4.88938 4.94599 4.95477 5.01729 5.03849 5.04335 5.22937 5.29347 5.30858 5.41265 5.57303 5.70202 5.82607 6.10124 6.18170 6.48596 6.75330 6.95746 7.07021 8.64245 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.022044 B = 0.003504 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.875719 B = 7988.606515 C = 8263.566161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.129 4.129 3 C 0.192 3.808 4 H 0.034 0.966 5 C -0.532 4.532 6 H 0.051 0.949 7 C 0.038 3.962 8 N -0.920 5.920 9 Si 0.924 3.076 10 H -0.274 1.274 11 H -0.263 1.263 12 H -0.250 1.250 13 O -0.353 6.353 14 C 0.434 3.566 15 O -0.535 6.535 16 C 0.126 3.874 17 N -0.569 5.569 18 C 0.703 3.297 19 O -0.577 6.577 20 N -0.693 5.693 21 C 0.165 3.835 22 C -0.151 4.151 23 C -0.178 4.178 24 C -0.160 4.160 25 C -0.146 4.146 26 C 0.531 3.469 27 O -0.478 6.478 28 H 0.038 0.962 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.277 0.723 34 H 0.151 0.849 35 H 0.163 0.837 36 H 0.452 0.548 37 H 0.094 0.906 38 H 0.052 0.948 39 H 0.114 0.886 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.108 0.892 43 H 0.112 0.888 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.022 7.602 9.909 29.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.138 3.862 4 H 0.052 0.948 5 C -0.569 4.569 6 H 0.069 0.931 7 C -0.163 4.163 8 N -0.558 5.558 9 Si 0.747 3.253 10 H -0.200 1.200 11 H -0.188 1.188 12 H -0.174 1.174 13 O -0.268 6.268 14 C 0.277 3.723 15 O -0.425 6.425 16 C 0.003 3.997 17 N -0.315 5.315 18 C 0.403 3.597 19 O -0.453 6.453 20 N -0.358 5.358 21 C 0.075 3.925 22 C -0.209 4.209 23 C -0.197 4.197 24 C -0.198 4.198 25 C -0.183 4.183 26 C 0.319 3.681 27 O -0.348 6.348 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.169 0.831 35 H 0.180 0.820 36 H 0.300 0.700 37 H 0.112 0.888 38 H 0.071 0.929 39 H 0.132 0.868 40 H 0.127 0.873 41 H 0.131 0.869 42 H 0.127 0.873 43 H 0.131 0.869 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -26.550 7.298 9.558 29.147 hybrid contribution 0.570 0.405 -1.043 1.255 sum -25.981 7.703 8.516 28.405 Atomic orbital electron populations 1.21782 0.95328 1.01669 1.00618 1.22014 0.95351 0.96636 1.02665 1.20886 0.94049 0.90491 0.80750 0.94833 1.20939 0.89543 1.51569 0.94861 0.93059 1.25609 0.96067 0.93328 1.01331 1.69948 1.11087 1.48881 1.25851 0.86087 0.80090 0.79518 0.79598 1.19970 1.18795 1.17382 1.86596 1.35068 1.62750 1.42405 1.24374 0.80246 0.76578 0.91070 1.90582 1.55433 1.59082 1.37448 1.21219 0.83897 1.00859 0.93734 1.46087 1.08553 1.15015 1.61809 1.15974 0.85149 0.81109 0.77424 1.91020 1.45151 1.53356 1.55757 1.45491 1.03095 1.17706 1.69479 1.20894 0.90942 0.83148 0.97537 1.22188 0.99859 1.04005 0.94848 1.22141 0.90969 1.10608 0.95985 1.23301 0.94065 0.97303 1.05108 1.23142 0.97282 0.93045 1.04814 1.21363 0.84179 0.87571 0.74985 1.90779 1.84170 1.17293 1.42530 0.94338 0.94061 0.90812 0.91193 0.91210 0.91376 0.83097 0.82005 0.70031 0.88769 0.92850 0.86779 0.87333 0.86899 0.87326 0.86937 0.86829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.27 8.57 71.98 0.62 -4.66 16 2 C -0.13 -5.68 5.63 30.59 0.17 -5.51 16 3 C 0.19 9.78 1.90 29.85 0.06 9.84 16 4 H 0.03 1.81 4.31 -2.39 -0.01 1.80 16 5 C -0.53 -31.29 9.25 25.60 0.24 -31.05 16 6 H 0.05 3.29 8.06 -2.91 -0.02 3.27 16 7 C 0.04 2.23 5.47 84.66 0.46 2.69 16 8 N -0.92 -56.35 13.96 21.45 0.30 -56.05 16 9 Si 0.92 45.23 26.99 68.60 1.85 47.08 16 10 H -0.27 -13.53 7.11 99.48 0.71 -12.82 16 11 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 12 H -0.25 -11.74 6.82 99.48 0.68 -11.06 16 13 O -0.35 -16.47 9.81 -51.45 -0.50 -16.97 16 14 C 0.43 17.72 6.51 71.23 0.46 18.19 16 15 O -0.53 -23.99 13.57 21.98 0.30 -23.69 16 16 C 0.13 3.75 6.29 85.63 0.54 4.28 16 17 N -0.57 -16.06 2.09 -777.21 -1.63 -17.69 16 18 C 0.70 19.91 8.62 179.44 1.55 21.45 16 19 O -0.58 -20.92 17.48 -3.83 -0.07 -20.99 16 20 N -0.69 -12.55 5.91 -439.82 -2.60 -15.15 16 21 C 0.16 2.74 1.19 2.98 0.00 2.74 16 22 C -0.15 -2.04 7.61 71.98 0.55 -1.49 16 23 C -0.18 -1.99 5.41 -10.79 -0.06 -2.05 16 24 C -0.16 -1.18 9.70 30.62 0.30 -0.88 16 25 C -0.15 -0.78 9.88 30.62 0.30 -0.47 16 26 C 0.53 13.44 6.98 87.94 0.61 14.06 16 27 O -0.48 -14.06 17.76 -2.90 -0.05 -14.11 16 28 H 0.04 1.50 6.04 -2.39 -0.01 1.48 16 29 H 0.04 1.66 7.83 -2.39 -0.02 1.65 16 30 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 32 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 33 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 34 H 0.15 4.07 7.86 -2.39 -0.02 4.05 16 35 H 0.16 3.83 8.00 -2.38 -0.02 3.81 16 36 H 0.45 5.47 8.96 -92.71 -0.83 4.64 16 37 H 0.09 1.18 6.95 -2.39 -0.02 1.17 16 38 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.11 0.75 6.94 -2.38 -0.02 0.73 16 40 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.11 0.71 6.03 -2.39 -0.01 0.69 16 42 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 43 H 0.11 0.41 8.14 -2.39 -0.02 0.40 16 44 H 0.11 0.31 7.29 -2.39 -0.02 0.29 16 Total: -1.00 -79.07 365.19 3.59 -75.48 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.19 Total: 14.96 kcal Atomic # 6 Polarization: 21.33 SS G_CDS: 5.80 Total: 27.13 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -3.93 Total: -88.89 kcal Atomic # 8 Polarization: -75.44 SS G_CDS: -0.32 Total: -75.77 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.85 Total: 47.08 kcal Total: -79.07 3.59 -75.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787086598.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.142 kcal (2) G-P(sol) polarization free energy of solvation -79.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds