Wall clock time and date at job start Tue Mar 31 2020 05:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35907 * 116.99777 * 2 1 4 4 C 1.38634 * 120.02319 * 0.02562 * 3 2 1 5 5 C 1.38640 * 119.88432 * 180.02562 * 4 3 2 6 6 O 1.35901 * 120.02162 * 179.97438 * 5 4 3 7 7 C 1.42902 * 117.00077 * 0.02562 * 6 5 4 8 8 C 1.38767 * 119.94932 * 359.97438 * 5 4 3 9 9 C 1.38176 * 120.05321 * 0.03128 * 8 5 4 10 10 C 1.50699 * 119.94421 * 179.97438 * 9 8 5 11 11 H 1.09000 * 109.47247 * 339.99728 * 10 9 8 12 12 O 1.42905 * 109.46972 * 219.99664 * 10 9 8 13 13 C 1.53005 * 109.47155 * 100.00116 * 10 9 8 14 14 N 1.46501 * 109.46915 * 185.00324 * 13 10 9 15 15 C 1.34777 * 119.99904 * 179.97438 * 14 13 10 16 16 O 1.21587 * 119.99873 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00124 * 179.97438 * 15 14 13 18 18 C 1.46499 * 119.99721 * 180.02562 * 17 15 14 19 19 C 1.50703 * 109.46747 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99843 * 359.97438 * 19 18 17 21 21 C 1.37871 * 119.99965 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00282 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 120.00100 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46820 * 90.00126 * 23 21 19 25 25 H 1.48498 * 109.47447 * 209.99976 * 23 21 19 26 26 H 1.48493 * 109.47272 * 330.00400 * 23 21 19 27 27 C 1.38178 * 120.10847 * 0.22934 * 9 8 5 28 28 H 1.09001 * 109.47605 * 299.99538 * 1 2 3 29 29 H 1.09003 * 109.47322 * 60.00151 * 1 2 3 30 30 H 1.09003 * 109.47044 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.06088 * 0.03610 * 4 3 2 32 32 H 1.08991 * 109.47348 * 300.00842 * 7 6 5 33 33 H 1.09006 * 109.46501 * 60.00972 * 7 6 5 34 34 H 1.09006 * 109.46650 * 180.02562 * 7 6 5 35 35 H 1.07993 * 119.97330 * 180.02562 * 8 5 4 36 36 H 0.96691 * 114.00079 * 299.99840 * 12 10 9 37 37 H 1.09000 * 109.46735 * 304.99446 * 13 10 9 38 38 H 1.08998 * 109.47316 * 64.99479 * 13 10 9 39 39 H 0.96997 * 120.00111 * 359.97438 * 14 13 10 40 40 H 0.96992 * 119.99882 * 359.97438 * 17 15 14 41 41 H 1.09004 * 109.47411 * 299.99813 * 18 17 15 42 42 H 1.08999 * 109.47159 * 60.00205 * 18 17 15 43 43 H 0.97002 * 120.00070 * 179.97438 * 22 21 19 44 44 H 1.08004 * 119.96801 * 179.72777 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3739 0.0005 5 6 1.9236 3.6077 0.0000 6 8 1.1866 4.7495 0.0000 7 6 -0.2350 4.6041 0.0011 8 6 3.3096 3.6758 -0.0005 9 6 4.0595 2.5152 -0.0012 10 6 5.5645 2.5920 -0.0024 11 1 5.8779 3.5750 -0.3541 12 8 6.0921 1.5855 -0.8688 13 6 6.0877 2.3677 1.4178 14 7 7.5399 2.5603 1.4393 15 6 8.2221 2.4137 2.5924 16 8 7.6323 2.1221 3.6148 17 7 9.5581 2.5904 2.6121 18 6 10.2997 2.4304 3.8653 19 6 11.7649 2.6808 3.6174 20 1 12.1093 2.9334 2.6254 21 6 12.6658 2.5875 4.6569 22 7 13.9445 2.8055 4.4405 23 14 12.0700 2.1514 6.3729 24 1 12.0963 0.6767 6.5460 25 1 12.9582 2.7839 7.3809 26 1 10.6821 2.6465 6.5557 27 6 3.4316 1.2843 -0.0061 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2127 2.3189 0.0015 32 1 -0.5448 4.0554 -0.8882 33 1 -0.5434 4.0565 0.8918 34 1 -0.7010 5.5895 0.0005 35 1 3.8026 4.6366 -0.0005 36 1 5.8527 0.6836 -0.6156 37 1 5.6168 3.0801 2.0952 38 1 5.8510 1.3525 1.7362 39 1 8.0103 2.7934 0.6237 40 1 10.0286 2.8227 1.7964 41 1 9.9288 3.1445 4.6007 42 1 10.1625 1.4168 4.2418 43 1 14.5783 2.7402 5.1720 44 1 4.0200 0.3786 -0.0110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787354682.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:44 Heat of formation + Delta-G solvation = -126.926428 kcal Electronic energy + Delta-G solvation = -26582.412466 eV Core-core repulsion = 22500.962268 eV Total energy + Delta-G solvation = -4081.450199 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.06484 -39.48401 -39.24269 -38.40556 -36.23897 -34.40748 -33.85671 -32.29220 -31.44981 -30.71981 -28.92626 -28.28770 -27.10256 -26.99215 -23.77048 -22.84055 -21.89469 -21.32472 -20.25554 -19.12270 -18.20738 -17.47469 -16.94941 -16.66717 -16.46335 -16.39454 -16.26615 -15.93402 -15.56009 -15.32499 -15.15998 -14.55092 -14.46750 -14.20774 -13.70351 -13.54834 -13.15242 -13.06169 -12.84705 -12.75844 -12.62164 -12.29844 -12.06153 -11.93208 -11.86236 -11.71946 -11.57399 -10.94929 -10.85618 -10.72130 -10.48225 -9.92373 -9.56799 -9.40787 -9.03163 -8.84194 -8.70711 -8.39696 -7.95846 -6.16340 -4.17932 0.82008 1.08260 2.73648 2.80564 3.15959 3.31282 3.35940 3.40748 3.47446 3.85084 4.16832 4.22719 4.38561 4.41351 4.53581 4.59805 4.63798 4.65985 4.66263 4.76062 4.79559 4.83415 4.97952 4.99897 5.01652 5.10853 5.19213 5.32294 5.67766 5.77058 5.80890 5.82192 6.11075 6.15977 6.70777 6.75915 6.80116 7.04260 7.16873 7.29697 7.30718 7.46324 7.62856 8.33430 8.74664 8.86983 9.26032 9.45523 10.95629 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.021464 B = 0.002089 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.166710 B =13398.823965 C =13590.976295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.169 3.831 4 C -0.296 4.296 5 C 0.168 3.832 6 O -0.312 6.312 7 C 0.027 3.973 8 C -0.173 4.173 9 C -0.035 4.035 10 C 0.140 3.860 11 H 0.120 0.880 12 O -0.548 6.548 13 C 0.116 3.884 14 N -0.751 5.751 15 C 0.695 3.305 16 O -0.605 6.605 17 N -0.722 5.722 18 C 0.238 3.762 19 C -0.541 4.541 20 H 0.079 0.921 21 C 0.077 3.923 22 N -0.894 5.894 23 Si 0.877 3.123 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.260 1.260 27 C -0.176 4.176 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.102 0.898 31 H 0.134 0.866 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.102 0.898 35 H 0.137 0.863 36 H 0.378 0.622 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.398 0.602 40 H 0.393 0.607 41 H 0.023 0.977 42 H 0.018 0.982 43 H 0.267 0.733 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.428 -0.734 -13.697 34.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.123 3.877 4 C -0.315 4.315 5 C 0.122 3.878 6 O -0.225 6.225 7 C -0.068 4.068 8 C -0.192 4.192 9 C -0.036 4.036 10 C 0.080 3.920 11 H 0.138 0.862 12 O -0.354 6.354 13 C -0.009 4.009 14 N -0.408 5.408 15 C 0.395 3.605 16 O -0.485 6.485 17 N -0.374 5.374 18 C 0.116 3.884 19 C -0.579 4.579 20 H 0.097 0.903 21 C -0.127 4.127 22 N -0.531 5.531 23 Si 0.704 3.296 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.184 1.184 27 C -0.195 4.195 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.121 0.879 31 H 0.152 0.848 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.155 0.845 36 H 0.227 0.773 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.232 0.768 40 H 0.226 0.774 41 H 0.041 0.959 42 H 0.036 0.964 43 H 0.077 0.923 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -31.374 -0.478 -12.919 33.933 hybrid contribution -0.626 -0.496 0.488 0.936 sum -32.000 -0.974 -12.431 34.344 Atomic orbital electron populations 1.23084 0.78263 1.04215 1.01276 1.86110 1.21505 1.26627 1.88265 1.18615 0.91857 0.83646 0.93567 1.21263 1.00517 0.92029 1.17739 1.18660 0.91076 0.84488 0.93598 1.86110 1.19227 1.28904 1.88267 1.23086 0.78385 1.04094 1.01283 1.20146 0.90354 0.99128 1.09585 1.19905 0.95897 0.92007 0.95826 1.21071 0.86986 0.93929 0.90000 0.86197 1.86638 1.76429 1.18369 1.53935 1.21713 0.80933 1.02695 0.95601 1.44956 1.07196 1.77992 1.10697 1.16100 0.82463 0.78691 0.83289 1.90865 1.68898 1.56256 1.32497 1.45378 1.04520 1.73394 1.14131 1.19355 0.91197 0.96366 0.81529 1.21106 0.89178 1.49632 0.98008 0.90259 1.24787 0.94617 0.94196 0.99099 1.69883 1.01657 1.48748 1.32826 0.86807 0.79618 0.79280 0.83929 1.19879 1.20979 1.18434 1.20012 0.91350 0.98155 1.09985 0.92603 0.92680 0.87937 0.84786 0.92678 0.92602 0.87941 0.84520 0.77275 0.90677 0.91269 0.76832 0.77380 0.95933 0.96396 0.92317 0.84880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.80 10.50 -19.45 -0.20 -3.01 16 3 C 0.17 1.63 6.68 -39.24 -0.26 1.36 16 4 C -0.30 -2.56 8.02 -39.29 -0.32 -2.88 16 5 C 0.17 1.62 6.68 -39.24 -0.26 1.36 16 6 O -0.31 -2.81 10.50 -19.43 -0.20 -3.01 16 7 C 0.03 0.13 9.81 101.05 0.99 1.12 16 8 C -0.17 -1.70 9.60 -39.41 -0.38 -2.08 16 9 C -0.04 -0.34 4.97 -104.67 -0.52 -0.86 16 10 C 0.14 1.33 3.24 -27.88 -0.09 1.24 16 11 H 0.12 1.04 8.00 -51.93 -0.42 0.62 16 12 O -0.55 -5.32 13.13 -35.23 -0.46 -5.79 16 13 C 0.12 1.43 5.29 -4.04 -0.02 1.41 16 14 N -0.75 -10.93 5.51 -65.22 -0.36 -11.29 16 15 C 0.69 14.01 8.57 -86.92 -0.74 13.27 16 16 O -0.61 -14.64 16.34 5.29 0.09 -14.56 16 17 N -0.72 -15.25 5.55 -66.41 -0.37 -15.62 16 18 C 0.24 6.05 4.50 -5.19 -0.02 6.03 16 19 C -0.54 -15.14 9.83 -34.44 -0.34 -15.48 16 20 H 0.08 2.30 7.84 -52.49 -0.41 1.89 16 21 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 22 N -0.89 -26.87 13.96 55.43 0.77 -26.09 16 23 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 24 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 27 C -0.18 -1.70 9.26 -39.41 -0.36 -2.07 16 28 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 29 H 0.05 0.21 7.66 -51.93 -0.40 -0.19 16 30 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.13 0.83 4.54 -52.49 -0.24 0.59 16 32 H 0.05 0.21 7.66 -51.93 -0.40 -0.19 16 33 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 34 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.14 1.20 8.03 -52.49 -0.42 0.77 16 36 H 0.38 2.77 7.49 45.56 0.34 3.11 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.40 4.85 8.49 -40.82 -0.35 4.50 16 40 H 0.39 7.30 8.33 -40.82 -0.34 6.96 16 41 H 0.02 0.61 7.20 -51.93 -0.37 0.23 16 42 H 0.02 0.48 7.57 -51.93 -0.39 0.08 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.13 1.10 6.77 -52.48 -0.36 0.74 16 LS Contribution 371.22 15.07 5.59 5.59 Total: -1.00 -36.38 371.22 -6.65 -43.04 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -5.40 Total: 7.92 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -1.44 Total: 5.66 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 0.05 Total: -53.00 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.78 Total: -26.36 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.38 -6.65 -43.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787354682.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.891 kcal (2) G-P(sol) polarization free energy of solvation -36.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds