Wall clock time and date at job start Tue Mar 31 2020 05:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35907 * 116.99777 * 2 1 4 4 C 1.38634 * 120.02319 * 0.02562 * 3 2 1 5 5 C 1.38640 * 119.88432 * 180.02562 * 4 3 2 6 6 O 1.35901 * 120.02162 * 179.97438 * 5 4 3 7 7 C 1.42902 * 117.00077 * 0.02562 * 6 5 4 8 8 C 1.38767 * 119.94932 * 359.97438 * 5 4 3 9 9 C 1.38176 * 120.05321 * 0.03128 * 8 5 4 10 10 C 1.50699 * 119.94421 * 179.97438 * 9 8 5 11 11 H 1.09000 * 109.47247 * 339.99728 * 10 9 8 12 12 O 1.42905 * 109.46972 * 219.99664 * 10 9 8 13 13 C 1.53005 * 109.47155 * 100.00116 * 10 9 8 14 14 N 1.46501 * 109.46915 * 185.00324 * 13 10 9 15 15 C 1.34777 * 119.99904 * 179.97438 * 14 13 10 16 16 O 1.21587 * 119.99873 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00124 * 179.97438 * 15 14 13 18 18 C 1.46499 * 119.99721 * 180.02562 * 17 15 14 19 19 C 1.50703 * 109.46747 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99843 * 359.97438 * 19 18 17 21 21 C 1.37871 * 119.99965 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00282 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 120.00100 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46820 * 90.00126 * 23 21 19 25 25 H 1.48498 * 109.47447 * 209.99976 * 23 21 19 26 26 H 1.48493 * 109.47272 * 330.00400 * 23 21 19 27 27 C 1.38178 * 120.10847 * 0.22934 * 9 8 5 28 28 H 1.09001 * 109.47605 * 299.99538 * 1 2 3 29 29 H 1.09003 * 109.47322 * 60.00151 * 1 2 3 30 30 H 1.09003 * 109.47044 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.06088 * 0.03610 * 4 3 2 32 32 H 1.08991 * 109.47348 * 300.00842 * 7 6 5 33 33 H 1.09006 * 109.46501 * 60.00972 * 7 6 5 34 34 H 1.09006 * 109.46650 * 180.02562 * 7 6 5 35 35 H 1.07993 * 119.97330 * 180.02562 * 8 5 4 36 36 H 0.96691 * 114.00079 * 299.99840 * 12 10 9 37 37 H 1.09000 * 109.46735 * 304.99446 * 13 10 9 38 38 H 1.08998 * 109.47316 * 64.99479 * 13 10 9 39 39 H 0.96997 * 120.00111 * 359.97438 * 14 13 10 40 40 H 0.96992 * 119.99882 * 359.97438 * 17 15 14 41 41 H 1.09004 * 109.47411 * 299.99813 * 18 17 15 42 42 H 1.08999 * 109.47159 * 60.00205 * 18 17 15 43 43 H 0.97002 * 120.00070 * 179.97438 * 22 21 19 44 44 H 1.08004 * 119.96801 * 179.72777 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3739 0.0005 5 6 1.9236 3.6077 0.0000 6 8 1.1866 4.7495 0.0000 7 6 -0.2350 4.6041 0.0011 8 6 3.3096 3.6758 -0.0005 9 6 4.0595 2.5152 -0.0012 10 6 5.5645 2.5920 -0.0024 11 1 5.8779 3.5750 -0.3541 12 8 6.0921 1.5855 -0.8688 13 6 6.0877 2.3677 1.4178 14 7 7.5399 2.5603 1.4393 15 6 8.2221 2.4137 2.5924 16 8 7.6323 2.1221 3.6148 17 7 9.5581 2.5904 2.6121 18 6 10.2997 2.4304 3.8653 19 6 11.7649 2.6808 3.6174 20 1 12.1093 2.9334 2.6254 21 6 12.6658 2.5875 4.6569 22 7 13.9445 2.8055 4.4405 23 14 12.0700 2.1514 6.3729 24 1 12.0963 0.6767 6.5460 25 1 12.9582 2.7839 7.3809 26 1 10.6821 2.6465 6.5557 27 6 3.4316 1.2843 -0.0061 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2127 2.3189 0.0015 32 1 -0.5448 4.0554 -0.8882 33 1 -0.5434 4.0565 0.8918 34 1 -0.7010 5.5895 0.0005 35 1 3.8026 4.6366 -0.0005 36 1 5.8527 0.6836 -0.6156 37 1 5.6168 3.0801 2.0952 38 1 5.8510 1.3525 1.7362 39 1 8.0103 2.7934 0.6237 40 1 10.0286 2.8227 1.7964 41 1 9.9288 3.1445 4.6007 42 1 10.1625 1.4168 4.2418 43 1 14.5783 2.7402 5.1720 44 1 4.0200 0.3786 -0.0110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787354682.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:44 Heat of formation + Delta-G solvation = -157.407210 kcal Electronic energy + Delta-G solvation = -26583.734212 eV Core-core repulsion = 22500.962268 eV Total energy + Delta-G solvation = -4082.771945 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.72112 -40.92474 -39.82482 -39.32438 -36.97667 -36.18034 -35.27472 -34.34934 -32.25772 -31.32637 -30.26779 -29.13711 -28.25109 -27.51521 -24.87521 -23.76194 -23.44473 -22.12742 -21.77440 -20.05134 -19.61625 -18.39338 -18.07825 -17.84691 -17.36655 -17.13556 -16.94757 -16.85573 -16.59790 -16.43116 -16.25667 -15.69590 -15.66269 -15.36495 -15.15172 -14.72389 -14.44792 -14.33013 -14.06312 -13.73393 -13.43633 -13.30984 -13.16503 -13.01047 -12.67421 -12.50655 -12.48957 -12.31057 -12.17253 -11.90695 -11.63619 -11.48725 -11.39617 -11.17991 -10.89664 -10.32121 -9.70328 -9.64402 -9.06796 -8.37574 -6.44286 0.12754 0.38967 1.35436 1.37016 1.50813 1.82632 2.22381 2.23625 2.28592 2.30967 2.58467 2.97874 3.37340 3.44347 3.66552 3.77467 3.86938 4.00520 4.05264 4.11439 4.27824 4.29399 4.32603 4.34737 4.39742 4.51394 4.66556 4.69469 4.70236 4.80226 4.89659 5.07865 5.14928 5.15784 5.27423 5.40926 5.46257 5.51082 5.57890 5.99463 6.14292 6.30359 6.44597 6.57913 6.65008 7.16368 7.28473 7.68142 8.77108 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.021464 B = 0.002089 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.166710 B =13398.823965 C =13590.976295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.158 3.842 4 C -0.294 4.294 5 C 0.157 3.843 6 O -0.330 6.330 7 C 0.016 3.984 8 C -0.188 4.188 9 C -0.039 4.039 10 C 0.157 3.843 11 H 0.132 0.868 12 O -0.555 6.555 13 C 0.116 3.884 14 N -0.727 5.727 15 C 0.695 3.305 16 O -0.646 6.646 17 N -0.722 5.722 18 C 0.251 3.749 19 C -0.545 4.545 20 H 0.059 0.941 21 C 0.025 3.975 22 N -0.931 5.931 23 Si 0.939 3.061 24 H -0.265 1.265 25 H -0.273 1.273 26 H -0.261 1.261 27 C -0.190 4.190 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.120 0.880 31 H 0.157 0.843 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.120 0.880 35 H 0.142 0.858 36 H 0.389 0.611 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.412 0.588 40 H 0.405 0.595 41 H 0.010 0.990 42 H 0.009 0.991 43 H 0.272 0.728 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.498 -0.950 -14.070 36.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.112 3.888 4 C -0.313 4.313 5 C 0.111 3.889 6 O -0.243 6.243 7 C -0.078 4.078 8 C -0.207 4.207 9 C -0.040 4.040 10 C 0.097 3.903 11 H 0.150 0.850 12 O -0.362 6.362 13 C -0.009 4.009 14 N -0.385 5.385 15 C 0.394 3.606 16 O -0.529 6.529 17 N -0.375 5.375 18 C 0.127 3.873 19 C -0.583 4.583 20 H 0.077 0.923 21 C -0.175 4.175 22 N -0.570 5.570 23 Si 0.762 3.238 24 H -0.190 1.190 25 H -0.198 1.198 26 H -0.185 1.185 27 C -0.209 4.209 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.138 0.862 31 H 0.174 0.826 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.138 0.862 35 H 0.160 0.840 36 H 0.239 0.761 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.249 0.751 40 H 0.241 0.759 41 H 0.028 0.972 42 H 0.027 0.973 43 H 0.081 0.919 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -33.474 -0.692 -13.366 36.050 hybrid contribution -0.104 -0.427 0.499 0.665 sum -33.578 -1.119 -12.867 35.976 Atomic orbital electron populations 1.23382 0.76338 1.05812 1.02261 1.86088 1.23603 1.26432 1.88189 1.18783 0.92096 0.84261 0.93651 1.21474 1.01701 0.91350 1.16758 1.18811 0.91278 0.85110 0.93675 1.86088 1.21167 1.28889 1.88189 1.23386 0.76447 1.05697 1.02265 1.20336 0.90932 0.99453 1.09964 1.19844 0.95670 0.92109 0.96402 1.20888 0.86958 0.94442 0.87998 0.85039 1.86620 1.76526 1.19176 1.53904 1.21865 0.79136 1.02260 0.97614 1.44763 1.08045 1.76156 1.09500 1.16202 0.81965 0.78313 0.84094 1.90835 1.69541 1.58036 1.34439 1.45101 1.05086 1.73948 1.13376 1.18949 0.90006 0.95321 0.83033 1.21283 0.90603 1.49143 0.97287 0.92253 1.25596 0.94707 0.94136 1.03048 1.69982 1.02816 1.49908 1.34300 0.85839 0.79062 0.79432 0.79439 1.18971 1.19776 1.18494 1.20225 0.91925 0.98516 1.10187 0.91774 0.91465 0.86188 0.82572 0.91473 0.91764 0.86161 0.84005 0.76089 0.91421 0.91699 0.75084 0.75943 0.97172 0.97289 0.91853 0.84097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.24 16 2 O -0.33 -5.51 10.50 -92.50 -0.97 -6.49 16 3 C 0.16 2.88 6.68 22.49 0.15 3.03 16 4 C -0.29 -4.66 8.02 22.46 0.18 -4.48 16 5 C 0.16 2.88 6.68 22.49 0.15 3.03 16 6 O -0.33 -5.54 10.50 -92.43 -0.97 -6.51 16 7 C 0.02 0.13 9.81 113.37 1.11 1.24 16 8 C -0.19 -3.56 9.60 22.38 0.21 -3.34 16 9 C -0.04 -0.72 4.97 -19.89 -0.10 -0.82 16 10 C 0.16 2.77 3.24 29.85 0.10 2.87 16 11 H 0.13 2.03 8.00 -2.39 -0.02 2.01 16 12 O -0.55 -9.87 13.13 -148.98 -1.96 -11.83 16 13 C 0.12 2.75 5.29 86.38 0.46 3.21 16 14 N -0.73 -20.26 5.51 -478.52 -2.64 -22.90 16 15 C 0.69 27.54 8.57 179.05 1.53 29.08 16 16 O -0.65 -31.08 16.34 -3.99 -0.07 -31.15 16 17 N -0.72 -30.16 5.55 -482.29 -2.68 -32.84 16 18 C 0.25 12.74 4.50 85.63 0.38 13.12 16 19 C -0.55 -30.69 9.83 25.60 0.25 -30.44 16 20 H 0.06 3.50 7.84 -2.91 -0.02 3.48 16 21 C 0.03 1.45 5.47 84.65 0.46 1.92 16 22 N -0.93 -56.24 13.96 21.44 0.30 -55.94 16 23 Si 0.94 44.83 27.47 68.60 1.88 46.72 16 24 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 25 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 26 H -0.26 -12.40 6.54 99.48 0.65 -11.75 16 27 C -0.19 -3.51 9.26 22.38 0.21 -3.31 16 28 H 0.06 0.40 7.66 -2.39 -0.02 0.38 16 29 H 0.07 0.37 7.66 -2.39 -0.02 0.35 16 30 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.16 1.59 4.54 -2.91 -0.01 1.58 16 32 H 0.07 0.37 7.66 -2.39 -0.02 0.35 16 33 H 0.06 0.40 7.66 -2.38 -0.02 0.38 16 34 H 0.12 0.49 8.14 -2.38 -0.02 0.47 16 35 H 0.14 2.39 8.03 -2.91 -0.02 2.37 16 36 H 0.39 5.12 7.49 -74.06 -0.55 4.56 16 37 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.41 9.29 8.49 -92.71 -0.79 8.50 16 40 H 0.41 14.81 8.33 -92.71 -0.77 14.03 16 41 H 0.01 0.55 7.20 -2.38 -0.02 0.53 16 42 H 0.01 0.48 7.57 -2.39 -0.02 0.46 16 43 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 44 H 0.14 2.23 6.77 -2.91 -0.02 2.21 16 Total: -1.00 -77.59 371.22 -1.98 -79.57 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: -1.10 Total: 25.01 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: 6.22 Total: 16.34 kcal Atomic # 7 Polarization: -106.66 SS G_CDS: -5.01 Total: -111.67 kcal Atomic # 8 Polarization: -52.00 SS G_CDS: -3.96 Total: -55.97 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.88 Total: 46.72 kcal Total: -77.59 -1.98 -79.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787354682.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.836 kcal (2) G-P(sol) polarization free energy of solvation -77.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds