Wall clock time and date at job start Tue Mar 31 2020 05:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35898 * 116.99641 * 2 1 4 4 C 1.38635 * 120.02776 * 0.02562 * 3 2 1 5 5 C 1.38636 * 119.89179 * 180.02562 * 4 3 2 6 6 O 1.35900 * 120.02815 * 179.97438 * 5 4 3 7 7 C 1.42903 * 116.99934 * 0.02562 * 6 5 4 8 8 C 1.38772 * 119.94385 * 0.02562 * 5 4 3 9 9 C 1.38182 * 120.05496 * 359.97438 * 8 5 4 10 10 C 1.50696 * 119.94566 * 180.02562 * 9 8 5 11 11 H 1.09001 * 109.47210 * 204.97790 * 10 9 8 12 12 O 1.42903 * 109.46774 * 324.97681 * 10 9 8 13 13 C 1.53002 * 109.47154 * 84.97339 * 10 9 8 14 14 N 1.46501 * 109.46972 * 179.97438 * 13 10 9 15 15 C 1.34776 * 119.99983 * 180.02562 * 14 13 10 16 16 O 1.21595 * 119.99741 * 359.97438 * 15 14 13 17 17 N 1.34770 * 120.00213 * 180.02562 * 15 14 13 18 18 C 1.46498 * 120.00126 * 179.97438 * 17 15 14 19 19 C 1.50701 * 109.47336 * 179.97438 * 18 17 15 20 20 H 1.07998 * 119.99705 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00096 * 179.97438 * 19 18 17 22 22 N 1.31515 * 120.00348 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00037 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47029 * 59.99740 * 23 21 19 25 25 H 1.48491 * 109.47201 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47088 * 300.00450 * 23 21 19 27 27 C 1.38171 * 120.10615 * 0.02562 * 9 8 5 28 28 H 1.09006 * 109.47188 * 299.99025 * 1 2 3 29 29 H 1.08992 * 109.47713 * 60.00038 * 1 2 3 30 30 H 1.09003 * 109.46821 * 180.02562 * 1 2 3 31 31 H 1.08009 * 120.05593 * 359.74934 * 4 3 2 32 32 H 1.08997 * 109.46951 * 299.99975 * 7 6 5 33 33 H 1.08997 * 109.47042 * 59.99597 * 7 6 5 34 34 H 1.08997 * 109.47126 * 179.97438 * 7 6 5 35 35 H 1.08000 * 119.97581 * 179.97438 * 8 5 4 36 36 H 0.96702 * 114.00514 * 60.00469 * 12 10 9 37 37 H 1.08997 * 109.46983 * 300.00127 * 13 10 9 38 38 H 1.09002 * 109.46651 * 60.00141 * 13 10 9 39 39 H 0.96996 * 120.00263 * 0.02562 * 14 13 10 40 40 H 0.96996 * 120.00033 * 359.97438 * 17 15 14 41 41 H 1.09005 * 109.47485 * 299.99874 * 18 17 15 42 42 H 1.09000 * 109.47276 * 59.99944 * 18 17 15 43 43 H 0.96994 * 120.00462 * 179.97438 * 22 21 19 44 44 H 1.08002 * 119.97247 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3739 0.0005 5 6 1.9236 3.6077 0.0000 6 8 1.1866 4.7495 0.0000 7 6 -0.2350 4.6041 0.0011 8 6 3.3096 3.6758 -0.0016 9 6 4.0595 2.5151 -0.0021 10 6 5.5645 2.5919 -0.0033 11 1 5.9745 1.6801 -0.4375 12 8 5.9834 3.7181 -0.7769 13 6 6.0686 2.7442 1.4333 14 7 7.5317 2.8182 1.4321 15 6 8.2005 2.9541 2.5943 16 8 7.5893 3.0157 3.6438 17 7 9.5464 3.0227 2.5933 18 6 10.2733 3.1710 3.8566 19 6 11.7540 3.2217 3.5812 20 1 12.1173 3.1511 2.5666 21 6 12.6449 3.3595 4.6244 22 7 12.2026 3.4460 5.8599 23 14 14.4804 3.4231 4.2830 24 1 14.7799 4.5791 3.4004 25 1 15.2171 3.5745 5.5634 26 1 14.9032 2.1668 3.6136 27 6 3.4317 1.2843 -0.0016 28 1 -0.3634 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.2127 2.3189 -0.0031 32 1 -0.5448 4.0556 -0.8883 33 1 -0.5435 4.0564 0.8916 34 1 -0.7010 5.5895 0.0015 35 1 3.8027 4.6366 -0.0025 36 1 5.6547 4.5658 -0.4475 37 1 5.6585 3.6560 1.8674 38 1 5.7490 1.8852 2.0233 39 1 8.0192 2.7694 0.5950 40 1 10.0339 2.9740 1.7562 41 1 9.9630 4.0931 4.3483 42 1 10.0534 2.3222 4.5041 43 1 12.8293 3.5425 6.5939 44 1 4.0199 0.3785 -0.0024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787354683.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:48 Heat of formation + Delta-G solvation = -130.349135 kcal Electronic energy + Delta-G solvation = -26527.482712 eV Core-core repulsion = 22445.884094 eV Total energy + Delta-G solvation = -4081.598618 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.02987 -39.37071 -39.21038 -38.32228 -36.19605 -34.27873 -33.72744 -32.25068 -31.39638 -30.67692 -28.80398 -28.06001 -27.03432 -26.62894 -23.74633 -22.81145 -22.24250 -21.27627 -20.12119 -19.07598 -18.03988 -17.44319 -16.91640 -16.63007 -16.42715 -16.35728 -15.92200 -15.90354 -15.43977 -15.24728 -15.12803 -14.54620 -14.37189 -14.33526 -13.54276 -13.48070 -13.10579 -12.99704 -12.75206 -12.68805 -12.49516 -12.03067 -11.90175 -11.84754 -11.68421 -11.62560 -11.52888 -10.93708 -10.83366 -10.81300 -10.44607 -10.25471 -9.37595 -9.33218 -8.98601 -8.73926 -8.62853 -8.36020 -7.69604 -6.10478 -4.16881 0.85945 1.11873 2.77133 2.83732 3.22189 3.29712 3.34063 3.35656 3.48060 4.00483 4.20296 4.26657 4.38375 4.44623 4.56552 4.65490 4.66851 4.68894 4.71217 4.79856 4.83489 4.88306 5.00861 5.02735 5.06298 5.25050 5.25340 5.36474 5.74900 5.83259 5.84669 5.86927 6.15196 6.19729 6.74028 6.87561 7.07645 7.18325 7.34396 7.57696 7.61056 7.62812 7.96947 8.10366 8.82024 9.00933 9.39140 9.53773 10.99743 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.023959 B = 0.001989 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.387373 B =14076.557630 C =14402.311359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.168 3.832 4 C -0.297 4.297 5 C 0.169 3.831 6 O -0.312 6.312 7 C 0.027 3.973 8 C -0.176 4.176 9 C -0.035 4.035 10 C 0.140 3.860 11 H 0.120 0.880 12 O -0.548 6.548 13 C 0.116 3.884 14 N -0.753 5.753 15 C 0.693 3.307 16 O -0.603 6.603 17 N -0.729 5.729 18 C 0.267 3.733 19 C -0.541 4.541 20 H 0.062 0.938 21 C 0.063 3.937 22 N -0.886 5.886 23 Si 0.905 3.095 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.276 1.276 27 C -0.174 4.174 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.102 0.898 31 H 0.134 0.866 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.102 0.898 35 H 0.133 0.867 36 H 0.379 0.621 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.396 0.604 40 H 0.387 0.613 41 H 0.024 0.976 42 H 0.024 0.976 43 H 0.266 0.734 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.108 -2.581 -16.758 31.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.122 3.878 4 C -0.316 4.316 5 C 0.123 3.877 6 O -0.225 6.225 7 C -0.068 4.068 8 C -0.195 4.195 9 C -0.036 4.036 10 C 0.080 3.920 11 H 0.138 0.862 12 O -0.355 6.355 13 C -0.009 4.009 14 N -0.411 5.411 15 C 0.392 3.608 16 O -0.482 6.482 17 N -0.381 5.381 18 C 0.146 3.854 19 C -0.580 4.580 20 H 0.080 0.920 21 C -0.141 4.141 22 N -0.524 5.524 23 Si 0.732 3.268 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.193 4.193 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.120 0.880 31 H 0.152 0.848 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.151 0.849 36 H 0.228 0.772 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.230 0.770 40 H 0.219 0.781 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.076 0.924 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -27.150 -2.945 -15.869 31.585 hybrid contribution 0.457 0.351 -0.461 0.737 sum -26.694 -2.594 -16.330 31.400 Atomic orbital electron populations 1.23082 0.78299 1.04188 1.01277 1.86109 1.21474 1.26649 1.88279 1.18653 0.91930 0.83617 0.93611 1.21258 1.00501 0.92032 1.17813 1.18613 0.90995 0.84495 0.93586 1.86109 1.19226 1.28905 1.88275 1.23081 0.78393 1.04086 1.01271 1.20003 0.90425 0.99067 1.09979 1.19919 0.95929 0.92022 0.95723 1.21071 0.88068 0.91318 0.91515 0.86224 1.86624 1.76352 1.16959 1.55521 1.21677 0.80903 1.03196 0.95173 1.44982 1.06003 1.81701 1.08406 1.16138 0.82749 0.78432 0.83440 1.90875 1.67973 1.58844 1.30518 1.45698 1.03485 1.76524 1.12393 1.18968 0.89641 0.97305 0.79481 1.21203 0.90636 1.52447 0.93711 0.91967 1.24950 0.99472 0.94839 0.94823 1.69969 1.35149 1.48494 0.98739 0.86464 0.84167 0.78641 0.77546 1.20102 1.21127 1.20102 1.20134 0.91289 0.98205 1.09664 0.92598 0.92697 0.87958 0.84804 0.92699 0.92600 0.87948 0.84874 0.77241 0.91367 0.90717 0.77000 0.78101 0.95779 0.95777 0.92446 0.84525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -2.90 10.50 -19.42 -0.20 -3.10 16 3 C 0.17 1.68 6.68 -39.24 -0.26 1.41 16 4 C -0.30 -2.66 8.02 -39.29 -0.32 -2.98 16 5 C 0.17 1.68 6.68 -39.24 -0.26 1.42 16 6 O -0.31 -2.90 10.50 -19.43 -0.20 -3.10 16 7 C 0.03 0.14 9.81 101.05 0.99 1.13 16 8 C -0.18 -1.77 9.26 -39.40 -0.37 -2.13 16 9 C -0.03 -0.35 5.00 -104.67 -0.52 -0.87 16 10 C 0.14 1.39 3.30 -27.88 -0.09 1.30 16 11 H 0.12 1.08 8.05 -51.93 -0.42 0.66 16 12 O -0.55 -5.49 12.88 -35.23 -0.45 -5.94 16 13 C 0.12 1.51 5.32 -4.04 -0.02 1.49 16 14 N -0.75 -11.49 5.45 -65.22 -0.36 -11.84 16 15 C 0.69 14.70 8.57 -86.92 -0.74 13.96 16 16 O -0.60 -15.47 16.34 5.28 0.09 -15.39 16 17 N -0.73 -16.06 5.55 -66.41 -0.37 -16.43 16 18 C 0.27 7.32 5.43 -5.19 -0.03 7.29 16 19 C -0.54 -15.01 9.28 -34.44 -0.32 -15.33 16 20 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 21 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 22 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 23 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 C -0.17 -1.77 9.61 -39.41 -0.38 -2.15 16 28 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 29 H 0.05 0.22 7.66 -51.93 -0.40 -0.17 16 30 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.13 0.87 4.54 -52.48 -0.24 0.63 16 32 H 0.05 0.22 7.66 -51.93 -0.40 -0.17 16 33 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 34 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.13 1.15 6.60 -52.49 -0.35 0.81 16 36 H 0.38 2.93 7.39 45.56 0.34 3.26 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.40 5.06 8.36 -40.82 -0.34 4.72 16 40 H 0.39 7.31 8.33 -40.82 -0.34 6.97 16 41 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 374.33 15.07 5.64 5.64 Total: -1.00 -36.38 374.33 -7.00 -43.38 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -5.43 Total: 9.08 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: -1.43 Total: 7.34 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: 0.01 Total: -54.07 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.78 Total: -27.53 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.38 -7.00 -43.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787354683.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.965 kcal (2) G-P(sol) polarization free energy of solvation -36.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds