Wall clock time and date at job start Tue Mar 31 2020 05:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99722 * 2 1 4 4 H 1.48504 * 109.46751 * 274.83559 * 3 2 1 5 5 H 1.48499 * 109.47119 * 34.83417 * 3 2 1 6 6 H 1.48499 * 109.46823 * 154.83519 * 3 2 1 7 7 C 1.37874 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99995 * 354.60021 * 7 2 1 9 9 C 1.50697 * 119.99838 * 174.87712 * 7 2 1 10 10 C 1.52994 * 115.55321 * 94.19130 * 9 7 2 11 11 N 1.46504 * 109.46738 * 55.23008 * 10 9 7 12 12 C 1.34779 * 119.99904 * 185.01494 * 11 10 9 13 13 O 1.21582 * 120.00014 * 5.19945 * 12 11 10 14 14 N 1.34781 * 119.99871 * 185.19915 * 12 11 10 15 15 N 1.40100 * 119.99768 * 5.30204 * 14 12 11 16 16 C 1.34777 * 119.99571 * 185.17417 * 15 14 12 17 17 O 1.21345 * 120.00169 * 0.02562 * 16 15 14 18 18 C 1.49450 * 119.99746 * 180.02562 * 16 15 14 19 19 O 1.21345 * 120.00085 * 0.02562 * 18 16 15 20 20 N 1.34777 * 119.99746 * 179.97438 * 18 16 15 21 21 C 1.47021 * 125.65206 * 359.69266 * 20 18 16 22 22 C 1.54312 * 107.27842 * 180.96570 * 21 20 18 23 23 C 1.55157 * 102.86084 * 22.52934 * 22 21 20 24 24 C 1.47427 * 125.64910 * 179.97438 * 20 18 16 25 25 C 1.53002 * 117.49924 * 308.52344 * 9 7 2 26 26 C 1.53003 * 117.49910 * 239.86550 * 9 7 2 27 27 H 0.97006 * 120.00531 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47400 * 175.22289 * 10 9 7 29 29 H 1.09000 * 109.47628 * 295.23018 * 10 9 7 30 30 H 0.96999 * 120.00012 * 5.01364 * 11 10 9 31 31 H 0.97001 * 119.99933 * 185.30458 * 14 12 11 32 32 H 0.96997 * 120.00162 * 5.18021 * 15 14 12 33 33 H 1.09003 * 109.88456 * 300.51516 * 21 20 18 34 34 H 1.09005 * 109.88253 * 61.67504 * 21 20 18 35 35 H 1.08998 * 110.92709 * 264.11036 * 22 21 20 36 36 H 1.09013 * 110.58806 * 140.78498 * 22 21 20 37 37 H 1.08999 * 111.00105 * 206.23008 * 23 22 21 38 38 H 1.08996 * 111.00660 * 82.37890 * 23 22 21 39 39 H 1.09000 * 110.36651 * 274.67742 * 24 20 18 40 40 H 1.09000 * 110.36451 * 36.88478 * 24 20 18 41 41 H 1.09002 * 117.49903 * 0.02562 * 25 9 7 42 42 H 1.09004 * 117.49932 * 145.02168 * 25 9 7 43 43 H 1.08999 * 117.50202 * 214.97490 * 26 9 7 44 44 H 1.09002 * 117.50005 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3943 2.1055 -1.3952 5 1 1.5013 2.6211 0.7997 6 1 3.5940 1.4129 0.5954 7 6 2.0045 -1.1940 -0.0005 8 1 1.4681 -2.1273 0.0871 9 6 3.5070 -1.1966 -0.1171 10 6 4.2715 -1.2376 1.2075 11 7 3.8288 -2.3935 1.9912 12 6 4.2933 -2.5767 3.2431 13 8 5.0047 -1.7351 3.7568 14 7 3.9693 -3.6930 3.9254 15 7 3.2431 -4.7126 3.2962 16 6 2.8290 -5.7812 4.0055 17 8 3.0847 -5.8599 5.1891 18 6 2.0548 -6.8691 3.3343 19 8 1.7994 -6.7905 2.1506 20 7 1.6411 -7.9379 4.0434 21 6 1.8865 -8.1634 5.4754 22 6 1.2513 -9.5213 5.8410 23 6 1.1842 -10.2507 4.4732 24 6 0.8726 -9.0776 3.5105 25 6 4.1277 -0.4002 -1.2666 26 6 4.1217 -1.9303 -1.3107 27 1 -0.4851 0.8400 0.0004 28 1 5.3398 -1.3217 1.0080 29 1 4.0774 -0.3229 1.7677 30 1 3.2014 -3.0269 1.6091 31 1 4.2389 -3.7903 4.8521 32 1 3.0384 -4.6494 2.3502 33 1 2.9590 -8.1898 5.6681 34 1 1.4221 -7.3695 6.0605 35 1 0.2521 -9.3849 6.2549 36 1 1.8875 -10.0668 6.5382 37 1 0.3816 -10.9881 4.4627 38 1 2.1407 -10.7130 4.2297 39 1 -0.1939 -8.8529 3.5185 40 1 1.2014 -9.3171 2.4992 41 1 3.4494 0.1259 -1.9384 42 1 5.0810 0.0941 -1.0793 43 1 5.0711 -2.4419 -1.1524 44 1 3.4395 -2.4115 -2.0114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797565013.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:37 Heat of formation + Delta-G solvation = -19.866283 kcal Electronic energy + Delta-G solvation = -27594.382836 eV Core-core repulsion = 23549.867865 eV Total energy + Delta-G solvation = -4044.514971 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.11454 -39.94657 -38.79630 -37.76698 -37.19176 -35.76495 -33.50940 -32.14762 -32.06423 -31.05791 -29.45838 -26.71544 -25.72466 -25.22316 -22.92581 -21.81977 -21.65650 -21.10670 -20.30625 -19.50335 -18.63592 -18.04291 -17.27809 -17.00674 -16.60721 -16.13544 -15.79151 -15.27286 -15.14798 -14.86128 -14.69472 -14.22014 -14.12918 -13.95200 -13.66671 -13.36503 -13.20690 -12.92138 -12.74495 -12.59656 -12.25115 -12.06255 -11.67008 -11.48961 -11.43912 -11.20401 -11.15468 -10.86643 -10.50939 -10.33469 -10.18397 -9.83547 -9.66818 -9.22598 -9.11335 -8.77214 -8.65994 -8.58077 -8.23598 -6.18529 -4.23441 1.14816 1.40531 2.64987 2.90360 3.25362 3.30536 3.38199 3.40778 3.44189 3.81991 4.16831 4.25118 4.37616 4.50051 4.76823 4.89783 4.94150 5.02003 5.12807 5.26938 5.33057 5.43601 5.51697 5.55159 5.61821 5.70772 5.82710 5.97803 6.01385 6.14334 6.18457 6.28438 6.40125 6.60945 6.69168 6.84565 6.88729 7.00263 7.05587 7.15168 7.40588 7.64354 7.66096 8.30353 8.36674 8.70250 8.80867 9.44355 10.92523 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.017350 B = 0.002932 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.461190 B = 9548.144324 C =10135.691008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.081 3.919 3 Si 0.881 3.119 4 H -0.280 1.280 5 H -0.295 1.295 6 H -0.256 1.256 7 C -0.493 4.493 8 H 0.079 0.921 9 C -0.018 4.018 10 C 0.171 3.829 11 N -0.713 5.713 12 C 0.710 3.290 13 O -0.577 6.577 14 N -0.533 5.533 15 N -0.490 5.490 16 C 0.509 3.491 17 O -0.518 6.518 18 C 0.533 3.467 19 O -0.509 6.509 20 N -0.591 5.591 21 C 0.104 3.896 22 C -0.136 4.136 23 C -0.134 4.134 24 C 0.104 3.896 25 C -0.191 4.191 26 C -0.180 4.180 27 H 0.266 0.734 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.399 0.601 31 H 0.439 0.561 32 H 0.436 0.564 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.643 -19.620 8.792 21.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.123 4.123 3 Si 0.710 3.290 4 H -0.206 1.206 5 H -0.222 1.222 6 H -0.181 1.181 7 C -0.531 4.531 8 H 0.097 0.903 9 C -0.019 4.019 10 C 0.047 3.953 11 N -0.367 5.367 12 C 0.410 3.590 13 O -0.451 6.451 14 N -0.292 5.292 15 N -0.242 5.242 16 C 0.288 3.712 17 O -0.393 6.393 18 C 0.314 3.686 19 O -0.384 6.384 20 N -0.326 5.326 21 C -0.019 4.019 22 C -0.174 4.174 23 C -0.172 4.172 24 C -0.018 4.018 25 C -0.229 4.229 26 C -0.217 4.217 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.235 0.765 31 H 0.285 0.715 32 H 0.281 0.719 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.109 0.891 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.063 -18.712 9.117 21.208 hybrid contribution -0.055 0.728 -0.247 0.771 sum 4.008 -17.984 8.870 20.449 Atomic orbital electron populations 1.69894 1.06422 1.27309 1.49225 1.24990 0.94593 0.99195 0.93511 0.86826 0.80889 0.83260 0.78075 1.20579 1.22162 1.18057 1.20139 0.86279 0.94652 1.51987 0.90347 1.19614 0.95655 1.01004 0.85625 1.21081 0.95470 0.86952 0.91809 1.45087 1.48493 1.29922 1.13243 1.15804 0.80898 0.80398 0.81927 1.90991 1.43134 1.41977 1.69047 1.44699 1.57955 1.11287 1.15306 1.44506 1.52270 1.14863 1.12532 1.20017 0.81403 0.82660 0.87078 1.90765 1.56019 1.78039 1.14458 1.19268 0.80889 0.82232 0.86260 1.90853 1.55704 1.77380 1.14417 1.48164 1.53463 1.19577 1.11412 1.22248 1.01915 0.97686 0.80012 1.22737 1.02049 0.95042 0.97557 1.22816 1.03132 0.96798 0.94465 1.22416 0.96233 0.84261 0.98901 1.22906 1.01305 0.94347 1.04307 1.22938 1.01011 0.93636 1.04140 0.92451 0.93600 0.91397 0.76542 0.71512 0.71930 0.90131 0.90140 0.90268 0.89682 0.89360 0.90321 0.90479 0.89616 0.89079 0.90553 0.90831 0.89250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.96 55.43 0.77 -25.48 16 2 C 0.08 2.22 5.46 -17.82 -0.10 2.12 16 3 Si 0.88 21.29 24.73 -169.99 -4.20 17.09 16 4 H -0.28 -6.60 7.09 56.52 0.40 -6.20 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.26 -5.92 5.79 56.52 0.33 -5.59 16 7 C -0.49 -12.76 8.86 -34.44 -0.31 -13.07 16 8 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 9 C -0.02 -0.38 0.97 -155.66 -0.15 -0.53 16 10 C 0.17 3.48 5.43 -4.04 -0.02 3.46 16 11 N -0.71 -13.17 5.28 -65.23 -0.34 -13.51 16 12 C 0.71 12.95 8.66 -86.91 -0.75 12.19 16 13 O -0.58 -12.30 17.16 5.29 0.09 -12.21 16 14 N -0.53 -7.97 6.26 27.63 0.17 -7.80 16 15 N -0.49 -6.66 6.20 30.90 0.19 -6.47 16 16 C 0.51 6.70 7.97 -11.58 -0.09 6.61 16 17 O -0.52 -7.14 13.97 5.50 0.08 -7.06 16 18 C 0.53 6.79 7.91 -11.58 -0.09 6.70 16 19 O -0.51 -7.66 16.73 5.50 0.09 -7.57 16 20 N -0.59 -5.95 3.33 -171.02 -0.57 -6.52 16 21 C 0.10 0.84 5.48 -3.07 -0.02 0.82 16 22 C -0.14 -0.68 6.95 -24.90 -0.17 -0.85 16 23 C -0.13 -0.64 7.08 -24.57 -0.17 -0.82 16 24 C 0.10 0.79 6.91 -2.52 -0.02 0.77 16 25 C -0.19 -3.84 7.37 -26.69 -0.20 -4.04 16 26 C -0.18 -3.38 9.93 -26.69 -0.27 -3.65 16 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.05 0.87 8.09 -51.93 -0.42 0.45 16 29 H 0.07 1.53 7.03 -51.93 -0.37 1.17 16 30 H 0.40 6.97 6.19 -40.82 -0.25 6.72 16 31 H 0.44 6.16 8.11 -182.60 -1.48 4.67 16 32 H 0.44 5.81 6.31 -182.60 -1.15 4.66 16 33 H 0.08 0.68 7.59 -51.93 -0.39 0.29 16 34 H 0.08 0.72 7.68 -51.93 -0.40 0.32 16 35 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.32 8.14 -51.92 -0.42 -0.10 16 37 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.69 8.03 -51.93 -0.42 0.27 16 41 H 0.09 1.94 6.72 -51.93 -0.35 1.59 16 42 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 LS Contribution 363.89 15.07 5.48 5.48 Total: -1.00 -32.40 363.89 -8.84 -41.24 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: -8.25 Total: 13.10 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: -2.36 Total: 9.72 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: 0.22 Total: -59.79 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: 0.26 Total: -26.84 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.20 Total: 17.09 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.40 -8.84 -41.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797565013.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.369 kcal (2) G-P(sol) polarization free energy of solvation -32.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds