Wall clock time and date at job start Tue Mar 31 2020 05:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00170 * 2 1 4 4 H 1.48499 * 109.47068 * 269.99963 * 3 2 1 5 5 H 1.48505 * 109.46809 * 29.99949 * 3 2 1 6 6 H 1.48497 * 109.47133 * 149.99748 * 3 2 1 7 7 C 1.37878 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00010 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00085 * 180.02562 * 7 2 1 10 10 H 1.08994 * 109.49780 * 59.93621 * 9 7 2 11 11 C 1.53041 * 109.49781 * 180.02562 * 9 7 2 12 12 C 1.53033 * 109.54007 * 181.34931 * 11 9 7 13 13 C 1.53194 * 109.31286 * 298.63591 * 12 11 9 14 14 N 1.46925 * 108.77647 * 54.62858 * 13 12 11 15 15 C 1.34779 * 120.62753 * 126.37104 * 14 13 12 16 16 O 1.21587 * 120.00193 * 185.22943 * 15 14 13 17 17 N 1.34777 * 120.00045 * 5.22841 * 15 14 13 18 18 C 1.46497 * 120.00250 * 175.01789 * 17 15 14 19 19 C 1.52995 * 109.47630 * 180.02562 * 18 17 15 20 20 H 1.08996 * 110.86373 * 59.29423 * 19 18 17 21 21 C 1.54741 * 110.97921 * 183.10255 * 19 18 17 22 22 C 1.51688 * 102.54717 * 142.35841 * 21 19 18 23 23 C 1.47596 * 125.86031 * 164.61641 * 22 21 19 24 24 N 1.34776 * 120.00102 * 180.02562 * 23 22 21 25 25 O 1.21552 * 119.99843 * 359.97438 * 23 22 21 26 26 N 1.29012 * 108.27971 * 344.61264 * 22 21 19 27 27 O 1.41487 * 112.89843 * 359.67775 * 26 22 21 28 28 C 1.46923 * 118.74066 * 306.65117 * 14 13 12 29 29 H 0.97002 * 119.99745 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46118 * 61.32738 * 11 9 7 31 31 H 1.09004 * 109.45884 * 301.37196 * 11 9 7 32 32 H 1.09006 * 109.50159 * 178.68289 * 12 11 9 33 33 H 1.09006 * 109.52528 * 58.60152 * 12 11 9 34 34 H 1.09003 * 109.58320 * 294.84547 * 13 12 11 35 35 H 1.09001 * 109.58696 * 174.42560 * 13 12 11 36 36 H 0.97004 * 120.00383 * 355.01682 * 17 15 14 37 37 H 1.09005 * 109.47203 * 59.99715 * 18 17 15 38 38 H 1.08999 * 109.47268 * 300.00434 * 18 17 15 39 39 H 1.08992 * 110.79073 * 260.62573 * 21 19 18 40 40 H 1.08997 * 110.79110 * 23.90336 * 21 19 18 41 41 H 0.97009 * 119.99763 * 359.97438 * 24 23 22 42 42 H 0.96997 * 120.00010 * 180.02562 * 24 23 22 43 43 H 1.08998 * 109.58631 * 173.14271 * 28 14 13 44 44 H 1.09006 * 109.58262 * 293.56357 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 1 3.8750 -0.6792 0.8904 11 6 4.0224 -2.6367 0.0010 12 6 5.5523 -2.6380 0.0355 13 6 6.0879 -1.9353 -1.2159 14 7 5.4873 -0.5972 -1.3006 15 6 6.2640 0.4977 -1.4210 16 8 5.7623 1.6049 -1.3945 17 7 7.5968 0.3653 -1.5709 18 6 8.4280 1.5475 -1.8110 19 6 9.8920 1.1233 -1.9439 20 1 10.0191 0.4196 -2.7665 21 6 10.8117 2.3550 -2.1215 22 6 12.0397 1.9676 -1.3196 23 6 13.3614 2.6205 -1.3927 24 7 14.3754 2.1773 -0.6233 25 8 13.5356 3.5573 -2.1473 26 7 11.7305 0.9696 -0.5628 27 8 10.3822 0.5659 -0.7076 28 6 4.0242 -0.4747 -1.2451 29 1 -0.4850 0.8401 -0.0004 30 1 3.6791 -3.1435 -0.9010 31 1 3.6389 -3.1578 0.8783 32 1 5.9149 -3.6657 0.0591 33 1 5.8971 -2.1102 0.9248 34 1 5.8210 -2.5123 -2.1014 35 1 7.1722 -1.8458 -1.1489 36 1 8.0058 -0.5128 -1.5197 37 1 8.3245 2.2402 -0.9758 38 1 8.1070 2.0367 -2.7306 39 1 11.0652 2.5003 -3.1715 40 1 10.3440 3.2496 -1.7106 41 1 14.2364 1.4294 -0.0213 42 1 15.2439 2.6066 -0.6710 43 1 3.7473 0.5784 -1.1973 44 1 3.5856 -0.9301 -2.1330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854052331.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:05 Heat of formation + Delta-G solvation = -32.195514 kcal Electronic energy + Delta-G solvation = -27590.909053 eV Core-core repulsion = 23545.859446 eV Total energy + Delta-G solvation = -4045.049607 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.17627 -40.06382 -39.54449 -37.22921 -35.18666 -34.50600 -33.42997 -33.25993 -32.04405 -31.36329 -30.39786 -26.88087 -25.20946 -25.10890 -24.19801 -22.34793 -22.02763 -20.56653 -20.13299 -19.04845 -18.45509 -17.95598 -17.76871 -16.83405 -16.56733 -16.40963 -15.88832 -15.64516 -15.12496 -15.03130 -14.49705 -14.23339 -13.99900 -13.88827 -13.68201 -13.52503 -13.40835 -12.93292 -12.79712 -12.46531 -12.36288 -12.23819 -12.06950 -11.55410 -11.30337 -11.10497 -11.03150 -10.60185 -10.48299 -10.38179 -10.19171 -10.08438 -9.83993 -9.66743 -9.21829 -9.08866 -9.06621 -8.56291 -7.97685 -6.07358 -4.09049 0.32356 2.05703 2.36649 2.65011 2.84574 3.42632 3.49433 3.51049 3.64149 3.64992 3.83133 3.88423 4.18477 4.22470 4.46648 4.47615 4.75586 4.97651 5.07982 5.11493 5.25194 5.33212 5.34763 5.46035 5.53668 5.79219 5.95479 5.99982 6.11482 6.17480 6.29383 6.41727 6.46431 6.56480 6.60386 6.61633 6.74080 6.87902 7.13661 7.29597 7.38663 7.48182 7.76057 8.22177 8.50730 8.89189 8.95565 9.54381 11.04379 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.023796 B = 0.002633 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.398943 B =10631.609192 C =11386.810271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.882 3.118 4 H -0.274 1.274 5 H -0.297 1.297 6 H -0.261 1.261 7 C -0.515 4.515 8 H 0.077 0.923 9 C 0.003 3.997 10 H 0.030 0.970 11 C -0.099 4.099 12 C -0.137 4.137 13 C 0.116 3.884 14 N -0.623 5.623 15 C 0.703 3.297 16 O -0.591 6.591 17 N -0.751 5.751 18 C 0.147 3.853 19 C 0.031 3.969 20 H 0.103 0.897 21 C -0.126 4.126 22 C 0.045 3.955 23 C 0.598 3.402 24 N -0.832 5.832 25 O -0.515 6.515 26 N -0.240 5.240 27 O -0.171 6.171 28 C 0.119 3.881 29 H 0.265 0.735 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.397 0.603 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.412 0.588 42 H 0.414 0.586 43 H 0.080 0.920 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.873 -0.505 -4.232 29.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.131 4.131 3 Si 0.711 3.289 4 H -0.200 1.200 5 H -0.225 1.225 6 H -0.186 1.186 7 C -0.554 4.554 8 H 0.095 0.905 9 C -0.017 4.017 10 H 0.048 0.952 11 C -0.137 4.137 12 C -0.175 4.175 13 C -0.008 4.008 14 N -0.359 5.359 15 C 0.405 3.595 16 O -0.469 6.469 17 N -0.411 5.411 18 C 0.021 3.979 19 C -0.028 4.028 20 H 0.121 0.879 21 C -0.166 4.166 22 C -0.150 4.150 23 C 0.379 3.621 24 N -0.397 5.397 25 O -0.388 6.388 26 N 0.017 4.983 27 O -0.194 6.194 28 C -0.002 4.002 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.234 0.766 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.242 0.758 42 H 0.246 0.754 43 H 0.098 0.902 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 28.493 0.215 -3.910 28.761 hybrid contribution 0.530 0.774 -0.330 0.994 sum 29.023 0.989 -4.240 29.347 Atomic orbital electron populations 1.69897 1.06287 1.27129 1.50109 1.25054 0.94773 0.99169 0.94057 0.86954 0.79668 0.83247 0.78994 1.20017 1.22478 1.18628 1.20947 0.88181 0.94592 1.51648 0.90487 1.19429 0.96782 0.92225 0.93237 0.95192 1.21426 0.91904 0.98870 1.01513 1.21989 0.98697 0.99434 0.97364 1.21570 0.96205 0.83984 0.99033 1.47658 1.07977 1.04387 1.75878 1.15878 0.80732 0.84887 0.78028 1.90915 1.73149 1.24279 1.58543 1.45117 1.06005 1.10026 1.79991 1.21186 0.84850 0.88525 1.03314 1.24133 0.95261 0.94723 0.88687 0.87932 1.22807 0.89744 1.00441 1.03643 1.25859 0.96924 0.94307 0.97898 1.16843 0.82090 0.82521 0.80606 1.43679 1.13900 1.38095 1.44073 1.90924 1.82382 1.27261 1.38201 1.78350 0.96186 1.08906 1.14826 1.91370 1.17736 1.70651 1.39665 1.22421 0.74441 1.02509 1.00832 0.92552 0.92504 0.92229 0.91668 0.91988 0.91527 0.91666 0.76598 0.90408 0.89425 0.86432 0.86521 0.75821 0.75395 0.90235 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.67 13.96 55.43 0.77 -26.89 16 2 C 0.07 2.12 5.45 -17.82 -0.10 2.02 16 3 Si 0.88 23.71 24.32 -169.99 -4.13 19.58 16 4 H -0.27 -7.42 6.93 56.52 0.39 -7.03 16 5 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 6 H -0.26 -7.12 6.53 56.52 0.37 -6.75 16 7 C -0.52 -14.39 9.15 -34.44 -0.32 -14.70 16 8 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 9 C 0.00 0.07 1.83 -91.87 -0.17 -0.10 16 10 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 11 C -0.10 -1.87 5.11 -26.69 -0.14 -2.00 16 12 C -0.14 -2.01 6.08 -26.61 -0.16 -2.17 16 13 C 0.12 1.61 6.39 -3.71 -0.02 1.58 16 14 N -0.62 -11.62 2.98 -178.76 -0.53 -12.15 16 15 C 0.70 13.24 8.30 -86.92 -0.72 12.52 16 16 O -0.59 -13.74 15.77 5.29 0.08 -13.66 16 17 N -0.75 -10.03 5.44 -65.23 -0.35 -10.39 16 18 C 0.15 1.59 5.38 -4.05 -0.02 1.57 16 19 C 0.03 0.24 3.85 -25.82 -0.10 0.15 16 20 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 21 C -0.13 -0.85 6.45 -26.48 -0.17 -1.03 16 22 C 0.05 0.35 7.29 -79.47 -0.58 -0.23 16 23 C 0.60 4.40 8.09 -12.44 -0.10 4.30 16 24 N -0.83 -3.19 8.87 30.47 0.27 -2.92 16 25 O -0.52 -5.41 17.79 5.32 0.09 -5.31 16 26 N -0.24 -2.13 12.15 35.28 0.43 -1.70 16 27 O -0.17 -1.77 12.21 -11.42 -0.14 -1.91 16 28 C 0.12 2.70 5.10 -3.94 -0.02 2.68 16 29 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.71 5.65 -51.93 -0.29 0.41 16 36 H 0.40 4.34 5.96 -40.82 -0.24 4.10 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.12 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.12 0.75 7.91 -51.93 -0.41 0.34 16 41 H 0.41 1.04 8.51 -40.82 -0.35 0.69 16 42 H 0.41 0.83 8.93 -40.82 -0.36 0.47 16 43 H 0.08 2.04 2.30 -51.93 -0.12 1.92 16 44 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 LS Contribution 356.66 15.07 5.37 5.37 Total: -1.00 -37.42 356.66 -6.73 -44.14 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -5.98 Total: 1.26 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -2.61 Total: 4.57 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: 0.59 Total: -54.05 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: 0.04 Total: -20.88 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -4.13 Total: 19.58 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -37.42 -6.73 -44.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854052331.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.949 kcal (2) G-P(sol) polarization free energy of solvation -37.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds