Wall clock time and date at job start Tue Mar 31 2020 05:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42898 * 109.46933 * 2 1 4 4 C 1.42898 * 114.00212 * 180.02562 * 3 2 1 5 5 H 1.08997 * 115.54508 * 355.66648 * 4 3 2 6 6 C 1.53073 * 117.49901 * 141.40187 * 4 3 2 7 7 C 1.53001 * 117.49986 * 210.00765 * 4 3 2 8 8 H 1.09003 * 117.49894 * 0.02562 * 7 4 3 9 9 C 1.50696 * 117.50396 * 145.02056 * 7 4 3 10 10 O 1.20833 * 119.99655 * 359.90310 * 9 7 4 11 11 O 1.34231 * 120.00640 * 180.18580 * 9 7 4 12 12 C 1.45193 * 117.00126 * 179.71955 * 11 9 7 13 13 C 1.50706 * 109.46845 * 180.02562 * 12 11 9 14 14 O 1.21283 * 119.99923 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00023 * 180.02562 * 13 12 11 16 16 C 1.46498 * 120.00131 * 179.97438 * 15 13 12 17 17 C 1.50706 * 109.46753 * 89.99898 * 16 15 13 18 18 H 1.07996 * 120.00238 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00011 * 180.02562 * 17 16 15 20 20 N 1.31521 * 119.99636 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00387 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46800 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46858 * 119.99808 * 21 19 17 24 24 H 1.48492 * 109.47412 * 240.00378 * 21 19 17 25 25 C 1.46497 * 119.99871 * 359.97438 * 15 13 12 26 26 C 1.53001 * 109.47119 * 90.00481 * 25 15 13 27 27 C 1.47202 * 109.47252 * 180.02562 * 26 25 15 28 28 N 9.16242 * 147.37574 * 319.29318 * 4 1 2 29 29 H 1.08993 * 109.46485 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46943 * 299.99353 * 1 2 3 31 31 H 1.08997 * 109.46824 * 60.00089 * 1 2 3 32 32 H 1.08997 * 109.46943 * 240.00647 * 2 1 3 33 33 H 1.08997 * 109.47358 * 120.00459 * 2 1 3 34 34 H 1.08997 * 117.49273 * 359.97438 * 6 4 3 35 35 H 1.09000 * 117.51296 * 214.96419 * 6 4 3 36 36 H 1.08997 * 109.47488 * 299.99586 * 12 11 9 37 37 H 1.08997 * 109.47515 * 60.00401 * 12 11 9 38 38 H 1.09000 * 109.47388 * 209.99823 * 16 15 13 39 39 H 1.08999 * 109.47386 * 330.00286 * 16 15 13 40 40 H 0.97008 * 119.99337 * 179.97438 * 20 19 17 41 41 H 1.09003 * 109.46961 * 209.99868 * 25 15 13 42 42 H 1.08994 * 109.47256 * 330.00138 * 25 15 13 43 43 H 1.09003 * 109.46704 * 299.99545 * 26 25 15 44 44 H 1.08998 * 109.47772 * 59.99544 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.9770 0.5198 0.0734 6 6 4.0512 2.5740 -0.8477 7 6 4.0426 2.6875 0.6781 8 1 3.3584 3.4086 1.1254 9 6 5.3543 2.5039 1.3969 10 8 5.8818 1.4171 1.4231 11 8 5.9338 3.5462 2.0128 12 6 7.1931 3.2945 2.6904 13 6 7.6890 4.5711 3.3193 14 8 7.0448 5.5925 3.2070 15 7 8.8489 4.5780 4.0055 16 6 9.3313 5.8190 4.6164 17 6 8.7924 5.9309 6.0193 18 1 8.1547 5.1549 6.4163 19 6 9.1134 7.0239 6.7961 20 7 9.8895 7.9691 6.3124 21 14 8.4460 7.1623 8.5353 22 1 7.6044 5.9769 8.8382 23 1 9.5768 7.2245 9.4958 24 1 7.6267 8.3950 8.6545 25 6 9.6273 3.3443 4.1407 26 6 10.6134 3.2333 2.9761 27 6 11.3952 1.9934 3.1115 28 7 11.9978 1.0380 3.2212 29 1 -0.3632 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8935 -0.5139 0.8899 34 1 3.3725 3.2200 -1.4046 35 1 5.0057 2.3665 -1.3316 36 1 7.0449 2.5421 3.4650 37 1 7.9277 2.9346 1.9701 38 1 10.4209 5.8102 4.6454 39 1 8.9904 6.6704 4.0273 40 1 10.1150 8.7383 6.8588 41 1 10.1771 3.3628 5.0817 42 1 8.9543 2.4870 4.1299 43 1 10.0636 3.2147 2.0351 44 1 11.2865 4.0906 2.9868 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919429088.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:58 Heat of formation + Delta-G solvation = -106.656690 kcal Electronic energy + Delta-G solvation = -26584.193267 eV Core-core repulsion = 22503.622030 eV Total energy + Delta-G solvation = -4080.571237 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.85001 -39.39761 -38.69567 -36.98471 -36.57339 -35.45072 -35.28956 -32.96104 -31.23034 -30.93584 -29.49978 -26.96934 -24.97782 -24.10581 -23.30059 -22.75198 -22.49779 -20.56314 -18.89388 -18.38649 -17.74838 -17.13587 -16.80943 -16.62851 -16.44801 -16.04546 -15.95066 -15.56435 -15.05011 -14.77251 -14.59654 -14.24152 -13.77095 -13.60350 -13.23737 -13.09306 -13.00801 -12.76459 -12.67495 -12.50768 -12.46482 -12.20480 -12.11281 -11.81068 -11.63835 -11.38983 -11.34910 -11.08379 -11.01459 -10.97852 -10.73142 -10.68405 -10.63849 -10.23770 -9.75459 -9.65963 -9.16175 -8.51799 -7.98213 -6.13481 -4.18295 1.87429 2.17477 2.69159 2.79189 3.06750 3.11876 3.26237 3.34675 3.38073 3.41532 3.61557 4.09125 4.28368 4.37602 4.40535 4.59774 4.67283 4.71449 4.77531 4.87773 4.91859 4.97491 4.98709 5.06819 5.11147 5.16322 5.22507 5.32782 5.40776 5.42494 5.50134 5.60315 5.72677 5.74213 5.98824 6.22817 6.76286 6.81158 7.24665 7.32621 7.54414 7.58725 7.82441 8.07409 8.11224 8.69792 8.87877 9.47509 10.94727 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.011213 B = 0.002677 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.599140 B =10455.613275 C =12116.697673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.056 3.944 3 O -0.353 6.353 4 C 0.055 3.945 5 H 0.127 0.873 6 C -0.148 4.148 7 C -0.169 4.169 8 H 0.145 0.855 9 C 0.495 3.505 10 O -0.513 6.513 11 O -0.321 6.321 12 C 0.045 3.955 13 C 0.509 3.491 14 O -0.508 6.508 15 N -0.592 5.592 16 C 0.246 3.754 17 C -0.531 4.531 18 H 0.059 0.941 19 C 0.063 3.937 20 N -0.892 5.892 21 Si 0.898 3.102 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.282 1.282 25 C 0.112 3.888 26 C -0.051 4.051 27 C 0.216 3.784 28 N -0.442 5.442 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.118 0.882 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.039 0.961 39 H 0.049 0.951 40 H 0.264 0.736 41 H 0.100 0.900 42 H 0.075 0.925 43 H 0.105 0.895 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.017 -13.902 -14.174 22.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.271 6.271 4 C -0.004 4.004 5 H 0.145 0.855 6 C -0.185 4.185 7 C -0.189 4.189 8 H 0.162 0.838 9 C 0.339 3.661 10 O -0.403 6.403 11 O -0.235 6.235 12 C -0.032 4.032 13 C 0.293 3.707 14 O -0.382 6.382 15 N -0.325 5.325 16 C 0.128 3.872 17 C -0.569 4.569 18 H 0.078 0.922 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.726 3.274 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.208 1.208 25 C -0.014 4.014 26 C -0.093 4.093 27 C -0.102 4.102 28 N -0.119 5.119 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.137 0.863 35 H 0.129 0.871 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.118 0.882 42 H 0.093 0.907 43 H 0.123 0.877 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.330 -14.717 -13.979 22.775 hybrid contribution -0.188 0.266 1.151 1.196 sum -10.518 -14.451 -12.828 22.001 Atomic orbital electron populations 1.21763 0.93343 1.02519 1.03347 1.22614 0.95718 0.82969 1.00697 1.87841 1.18091 1.27384 1.93833 1.22703 0.82472 0.94129 1.01055 0.85537 1.23551 1.03303 1.01541 0.90148 1.22194 0.94616 1.05450 0.96591 0.83759 1.22534 0.85564 0.82005 0.76036 1.90659 1.64301 1.26800 1.58499 1.86565 1.36055 1.38315 1.62553 1.23026 0.84179 0.98453 0.97557 1.19725 0.82090 0.88915 0.79925 1.90749 1.54929 1.33768 1.58752 1.48158 1.20420 1.11760 1.52177 1.19432 0.94880 0.79837 0.93098 1.21438 1.30956 1.06548 0.98001 0.92229 1.24920 0.94991 0.95342 0.98723 1.69931 1.36078 1.09981 1.37128 0.86440 0.78744 0.78228 0.84011 1.19768 1.20961 1.20829 1.21399 0.93936 0.87934 0.98117 1.19892 0.97604 0.89644 1.02130 1.28991 0.93616 0.94399 0.93180 1.81165 1.10143 1.12011 1.08622 0.90820 0.91635 0.91720 0.92802 0.92760 0.86345 0.87062 0.88406 0.88619 0.94279 0.93308 0.92647 0.88168 0.90655 0.87677 0.86186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.28 37.16 0.38 -0.49 16 2 C 0.06 0.39 6.53 37.16 0.24 0.64 16 3 O -0.35 -3.37 10.60 -35.23 -0.37 -3.74 16 4 C 0.06 0.50 5.96 -26.69 -0.16 0.35 16 5 H 0.13 1.11 7.45 -51.93 -0.39 0.72 16 6 C -0.15 -1.21 10.19 -26.69 -0.27 -1.48 16 7 C -0.17 -1.78 6.25 -91.77 -0.57 -2.36 16 8 H 0.14 1.48 8.14 -51.93 -0.42 1.06 16 9 C 0.50 6.55 7.74 36.00 0.28 6.83 16 10 O -0.51 -7.35 16.01 -18.76 -0.30 -7.65 16 11 O -0.32 -4.93 9.75 -45.90 -0.45 -5.37 16 12 C 0.05 0.64 4.50 36.01 0.16 0.80 16 13 C 0.51 9.44 7.75 -10.98 -0.09 9.36 16 14 O -0.51 -11.95 16.08 -14.11 -0.23 -12.18 16 15 N -0.59 -10.58 2.46 -175.06 -0.43 -11.01 16 16 C 0.25 5.67 5.16 -5.19 -0.03 5.64 16 17 C -0.53 -13.93 9.39 -34.44 -0.32 -14.25 16 18 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -25.11 13.29 55.43 0.74 -24.37 16 21 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C 0.11 1.45 5.17 -4.04 -0.02 1.43 16 26 C -0.05 -0.52 6.03 -29.52 -0.18 -0.70 16 27 C 0.22 2.60 15.43 -20.80 -0.32 2.28 16 28 N -0.44 -6.52 18.53 42.11 0.78 -5.74 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.12 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.10 1.25 7.39 -51.93 -0.38 0.87 16 37 H 0.10 1.08 7.18 -51.93 -0.37 0.71 16 38 H 0.04 0.88 8.07 -51.93 -0.42 0.47 16 39 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16 40 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 41 H 0.10 1.36 8.07 -51.93 -0.42 0.94 16 42 H 0.08 0.82 6.44 -51.93 -0.33 0.48 16 43 H 0.11 0.87 7.22 -51.93 -0.37 0.49 16 44 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 392.04 15.07 5.91 5.91 Total: -1.00 -34.33 392.04 -6.79 -41.12 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -6.43 Total: -2.63 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: -0.99 Total: 9.64 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 1.09 Total: -41.11 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -1.35 Total: -28.95 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.33 -6.79 -41.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919429088.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.532 kcal (2) G-P(sol) polarization free energy of solvation -34.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds