Wall clock time and date at job start Tue Mar 31 2020 05:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00060 * 2 1 4 4 H 1.48493 * 109.47322 * 239.99732 * 3 2 1 5 5 H 1.48502 * 109.47114 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47151 * 119.99784 * 3 2 1 7 7 C 1.38808 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00041 * 195.66371 * 7 2 1 9 9 N 1.36946 * 120.00081 * 15.66104 * 7 2 1 10 10 C 1.47597 * 118.63994 * 26.52432 * 9 7 2 11 11 C 1.53950 * 112.17312 * 137.86611 * 10 9 7 12 12 C 1.50872 * 110.06773 * 319.44194 * 11 10 9 13 13 C 1.52571 * 109.37704 * 91.87068 * 12 11 10 14 14 C 1.47089 * 114.32746 * 274.97174 * 13 12 11 15 15 H 1.09005 * 109.32850 * 302.54577 * 14 13 12 16 16 N 1.46504 * 109.33014 * 183.06296 * 14 13 12 17 17 C 1.34779 * 119.99961 * 155.00167 * 16 14 13 18 18 O 1.21281 * 119.99640 * 359.97438 * 17 16 14 19 19 C 1.50698 * 119.99806 * 180.02562 * 17 16 14 20 20 C 1.53007 * 109.46911 * 180.02562 * 19 17 16 21 21 H 1.08995 * 110.53201 * 55.69617 * 20 19 17 22 22 N 1.47315 * 110.59528 * 292.86749 * 20 19 17 23 23 C 1.34528 * 106.61910 * 241.47069 * 22 20 19 24 24 O 1.21531 * 123.77124 * 180.02562 * 23 22 20 25 25 N 1.33791 * 112.45435 * 0.02562 * 23 22 20 26 26 C 1.35116 * 111.69304 * 359.90689 * 25 23 22 27 27 O 1.21226 * 127.34113 * 180.10193 * 26 25 23 28 28 C 1.44578 * 118.63988 * 206.50246 * 9 7 2 29 29 H 0.97000 * 120.00069 * 359.97438 * 1 2 3 30 30 H 1.09006 * 108.94430 * 258.55411 * 10 9 7 31 31 H 1.08994 * 108.95113 * 17.18146 * 10 9 7 32 32 H 1.09002 * 109.40203 * 199.24377 * 11 10 9 33 33 H 1.09005 * 109.35654 * 79.61319 * 11 10 9 34 34 H 1.09001 * 109.49669 * 331.89272 * 12 11 10 35 35 H 1.09000 * 109.48955 * 211.84506 * 12 11 10 36 36 H 1.09003 * 108.51175 * 36.22954 * 13 12 11 37 37 H 1.08998 * 108.51208 * 153.87615 * 13 12 11 38 38 H 0.96994 * 119.99567 * 335.00215 * 16 14 13 39 39 H 1.08998 * 109.46967 * 299.99566 * 19 17 16 40 40 H 1.08995 * 109.46987 * 60.00166 * 19 17 16 41 41 H 0.97004 * 126.68748 * 61.44191 * 22 20 19 42 42 H 0.97000 * 124.17711 * 180.02562 * 25 23 22 43 43 H 1.09001 * 109.44394 * 150.69023 * 28 9 7 44 44 H 1.08997 * 109.45384 * 30.76699 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0601 -1.2194 0.2531 9 7 1.3636 -2.3662 -0.3191 10 6 0.1797 -2.2996 -1.1980 11 6 0.1711 -3.4257 -2.2476 12 6 1.5624 -3.6371 -2.7915 13 6 2.2707 -4.7082 -1.9676 14 6 2.9227 -4.2032 -0.7496 15 1 3.6412 -3.4292 -1.0195 16 7 3.6265 -5.3028 -0.0849 17 6 4.6753 -5.0424 0.7207 18 8 5.0366 -3.8979 0.8948 19 6 5.3996 -6.1736 1.4040 20 6 6.5401 -5.6094 2.2537 21 1 6.1611 -4.8719 2.9611 22 7 7.5815 -5.0176 1.3960 23 6 8.7098 -5.7135 1.6251 24 8 9.7689 -5.4832 1.0753 25 7 8.5356 -6.6874 2.5258 26 6 7.2642 -6.7247 2.9815 27 8 6.7984 -7.4883 3.7997 28 6 1.8692 -3.6097 0.2179 29 1 -0.4850 0.8400 0.0004 30 1 -0.7195 -2.3786 -0.5869 31 1 0.1735 -1.3380 -1.7111 32 1 -0.4988 -3.1550 -3.0637 33 1 -0.1802 -4.3481 -1.7849 34 1 2.1219 -2.7036 -2.7322 35 1 1.5014 -3.9591 -3.8310 36 1 1.5396 -5.4641 -1.6808 37 1 3.0284 -5.1809 -2.5925 38 1 3.3377 -6.2182 -0.2245 39 1 4.7041 -6.7161 2.0443 40 1 5.8061 -6.8509 0.6531 41 1 7.4744 -4.2719 0.7850 42 1 9.2362 -7.2916 2.8174 43 1 1.0466 -4.3152 0.3358 44 1 2.3305 -3.4253 1.1881 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034253201.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:48 Heat of formation + Delta-G solvation = -61.714255 kcal Electronic energy + Delta-G solvation = -28273.956204 eV Core-core repulsion = 24227.626568 eV Total energy + Delta-G solvation = -4046.329635 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.63018 -39.84247 -38.91664 -37.84465 -36.44103 -34.72337 -34.21677 -33.30166 -31.54346 -30.86115 -29.85083 -26.36130 -25.69342 -24.22621 -23.16487 -22.91010 -21.78786 -20.43165 -20.13699 -19.21403 -18.65489 -17.52228 -16.98881 -16.74656 -16.62407 -16.22490 -15.90082 -15.73991 -15.23602 -14.89645 -14.61495 -14.43765 -14.08002 -13.80257 -13.55174 -13.36985 -13.05900 -12.68629 -12.58612 -12.22497 -12.15759 -11.58512 -11.35961 -11.08111 -10.95989 -10.79023 -10.71853 -10.62907 -10.61390 -10.19615 -10.17040 -9.80949 -9.75704 -9.71715 -9.65589 -9.62721 -8.92984 -8.34566 -6.66458 -5.76618 -3.20465 1.21716 2.13578 2.66260 2.71207 2.80338 3.23644 3.41951 3.46567 3.49617 3.71530 4.16536 4.52354 4.54799 4.76063 5.05579 5.11673 5.18858 5.27412 5.31031 5.40719 5.49592 5.67675 5.69070 5.93534 5.97692 6.08262 6.24394 6.33605 6.53543 6.55342 6.56708 6.61750 6.65156 6.68193 6.78307 6.87908 7.02959 7.04062 7.42396 7.62145 7.70428 7.88562 7.89269 8.31432 8.49621 9.26181 9.91299 10.34782 11.31041 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.014531 B = 0.003301 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.471844 B = 8481.455931 C = 9457.165024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.006 3.994 3 Si 0.901 3.099 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.258 4.258 8 H 0.069 0.931 9 N -0.583 5.583 10 C 0.176 3.824 11 C -0.144 4.144 12 C -0.101 4.101 13 C -0.112 4.112 14 C 0.113 3.887 15 H 0.089 0.911 16 N -0.718 5.718 17 C 0.512 3.488 18 O -0.529 6.529 19 C -0.144 4.144 20 C 0.108 3.892 21 H 0.141 0.859 22 N -0.708 5.708 23 C 0.701 3.299 24 O -0.547 6.547 25 N -0.682 5.682 26 C 0.531 3.469 27 O -0.464 6.464 28 C 0.159 3.841 29 H 0.253 0.747 30 H 0.024 0.976 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.047 0.953 38 H 0.393 0.607 39 H 0.120 0.880 40 H 0.102 0.898 41 H 0.449 0.551 42 H 0.432 0.568 43 H 0.031 0.969 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.747 -16.353 0.248 18.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.192 4.192 3 Si 0.730 3.270 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.388 4.388 8 H 0.087 0.913 9 N -0.304 5.304 10 C 0.051 3.949 11 C -0.183 4.183 12 C -0.139 4.139 13 C -0.150 4.150 14 C 0.007 3.993 15 H 0.107 0.893 16 N -0.369 5.369 17 C 0.296 3.704 18 O -0.405 6.405 19 C -0.185 4.185 20 C -0.001 4.001 21 H 0.158 0.842 22 N -0.374 5.374 23 C 0.400 3.600 24 O -0.421 6.421 25 N -0.353 5.353 26 C 0.317 3.683 27 O -0.333 6.333 28 C 0.029 3.971 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.226 0.774 39 H 0.138 0.862 40 H 0.121 0.879 41 H 0.296 0.704 42 H 0.274 0.726 43 H 0.049 0.951 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.067 -15.591 0.509 18.043 hybrid contribution 0.477 0.381 -0.193 0.640 sum 9.544 -15.210 0.316 17.959 Atomic orbital electron populations 1.70065 1.05205 1.25502 1.54257 1.25009 0.95231 0.98328 1.00675 0.86396 0.78907 0.83404 0.78244 1.21040 1.21745 1.20857 1.19252 0.92652 0.84747 1.42100 0.91323 1.43572 1.32125 1.01546 1.53151 1.21054 0.88435 0.95805 0.89596 1.22080 0.95866 1.00635 0.99673 1.20825 0.97092 0.99405 0.96561 1.20573 0.99223 0.98972 0.96221 1.21340 0.96129 0.87961 0.93918 0.89334 1.46162 1.31931 1.10730 1.48027 1.20122 0.80688 0.89856 0.79732 1.90780 1.66032 1.21968 1.61766 1.21901 0.97217 0.98788 1.00641 1.21791 0.89523 0.95054 0.93782 0.84166 1.45692 1.08320 1.36980 1.46397 1.15920 0.84915 0.79543 0.79648 1.91061 1.26840 1.70477 1.53730 1.44402 1.14440 1.34632 1.41816 1.20852 0.82336 0.84198 0.80962 1.90859 1.71420 1.40706 1.30307 1.20898 0.93336 0.88525 0.94374 0.93691 0.95739 0.90634 0.92905 0.93711 0.90449 0.93406 0.92800 0.93472 0.77370 0.86220 0.87936 0.70391 0.72605 0.95110 0.93283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.80 11.01 55.49 0.61 -25.19 16 2 C 0.01 0.16 4.87 -17.43 -0.08 0.08 16 3 Si 0.90 21.85 29.58 -169.99 -5.03 16.82 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.26 -6.93 9.44 -15.06 -0.14 -7.07 16 8 H 0.07 1.89 7.88 -52.49 -0.41 1.48 16 9 N -0.58 -13.80 2.27 -172.09 -0.39 -14.19 16 10 C 0.18 4.00 4.66 -2.95 -0.01 3.98 16 11 C -0.14 -2.50 5.71 -27.30 -0.16 -2.65 16 12 C -0.10 -1.61 5.50 -28.02 -0.15 -1.76 16 13 C -0.11 -1.56 4.54 -29.79 -0.14 -1.70 16 14 C 0.11 1.79 2.33 -69.78 -0.16 1.63 16 15 H 0.09 1.72 7.57 -51.93 -0.39 1.33 16 16 N -0.72 -8.37 5.06 -55.62 -0.28 -8.65 16 17 C 0.51 6.10 7.66 -10.99 -0.08 6.01 16 18 O -0.53 -8.55 14.65 5.56 0.08 -8.47 16 19 C -0.14 -1.09 5.46 -27.88 -0.15 -1.24 16 20 C 0.11 0.92 3.16 -68.20 -0.22 0.70 16 21 H 0.14 1.22 8.01 -51.93 -0.42 0.80 16 22 N -0.71 -6.82 5.88 -59.19 -0.35 -7.17 16 23 C 0.70 7.33 9.00 -88.02 -0.79 6.53 16 24 O -0.55 -7.75 18.04 5.34 0.10 -7.65 16 25 N -0.68 -5.31 5.71 -15.71 -0.09 -5.40 16 26 C 0.53 4.49 8.17 -10.40 -0.08 4.40 16 27 O -0.46 -4.98 18.02 5.60 0.10 -4.88 16 28 C 0.16 3.13 5.23 -4.08 -0.02 3.10 16 29 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.02 0.61 8.03 -51.93 -0.42 0.19 16 31 H 0.08 1.93 6.33 -51.93 -0.33 1.60 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.04 0.72 7.32 -51.93 -0.38 0.34 16 34 H 0.08 1.47 7.48 -51.93 -0.39 1.08 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.69 7.36 -51.93 -0.38 0.30 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.39 3.24 8.57 -40.82 -0.35 2.89 16 39 H 0.12 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.45 4.72 8.18 -40.82 -0.33 4.39 16 42 H 0.43 2.46 8.96 -40.82 -0.37 2.09 16 43 H 0.03 0.57 8.07 -51.93 -0.42 0.15 16 44 H 0.05 1.06 7.96 -51.93 -0.41 0.65 16 LS Contribution 358.05 15.07 5.40 5.40 Total: -1.00 -33.36 358.05 -8.30 -41.67 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -6.25 Total: 5.70 kcal Atomic # 6 Polarization: 14.22 SS G_CDS: -2.20 Total: 12.02 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: -0.50 Total: -60.60 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: 0.28 Total: -21.00 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.36 -8.30 -41.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034253201.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.049 kcal (2) G-P(sol) polarization free energy of solvation -33.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds