Wall clock time and date at job start Tue Mar 31 2020 05:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00060 * 2 1 4 4 H 1.48493 * 109.47322 * 239.99732 * 3 2 1 5 5 H 1.48502 * 109.47114 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47151 * 119.99784 * 3 2 1 7 7 C 1.38808 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00041 * 195.66371 * 7 2 1 9 9 N 1.36946 * 120.00081 * 15.66104 * 7 2 1 10 10 C 1.47597 * 118.63994 * 26.52432 * 9 7 2 11 11 C 1.53950 * 112.17312 * 137.86611 * 10 9 7 12 12 C 1.50872 * 110.06773 * 319.44194 * 11 10 9 13 13 C 1.52571 * 109.37704 * 91.87068 * 12 11 10 14 14 C 1.47089 * 114.32746 * 274.97174 * 13 12 11 15 15 H 1.09005 * 109.32850 * 302.54577 * 14 13 12 16 16 N 1.46504 * 109.33014 * 183.06296 * 14 13 12 17 17 C 1.34779 * 119.99961 * 155.00167 * 16 14 13 18 18 O 1.21281 * 119.99640 * 359.97438 * 17 16 14 19 19 C 1.50698 * 119.99806 * 180.02562 * 17 16 14 20 20 C 1.53007 * 109.46911 * 180.02562 * 19 17 16 21 21 H 1.08995 * 110.53201 * 55.69617 * 20 19 17 22 22 N 1.47315 * 110.59528 * 292.86749 * 20 19 17 23 23 C 1.34528 * 106.61910 * 241.47069 * 22 20 19 24 24 O 1.21531 * 123.77124 * 180.02562 * 23 22 20 25 25 N 1.33791 * 112.45435 * 0.02562 * 23 22 20 26 26 C 1.35116 * 111.69304 * 359.90689 * 25 23 22 27 27 O 1.21226 * 127.34113 * 180.10193 * 26 25 23 28 28 C 1.44578 * 118.63988 * 206.50246 * 9 7 2 29 29 H 0.97000 * 120.00069 * 359.97438 * 1 2 3 30 30 H 1.09006 * 108.94430 * 258.55411 * 10 9 7 31 31 H 1.08994 * 108.95113 * 17.18146 * 10 9 7 32 32 H 1.09002 * 109.40203 * 199.24377 * 11 10 9 33 33 H 1.09005 * 109.35654 * 79.61319 * 11 10 9 34 34 H 1.09001 * 109.49669 * 331.89272 * 12 11 10 35 35 H 1.09000 * 109.48955 * 211.84506 * 12 11 10 36 36 H 1.09003 * 108.51175 * 36.22954 * 13 12 11 37 37 H 1.08998 * 108.51208 * 153.87615 * 13 12 11 38 38 H 0.96994 * 119.99567 * 335.00215 * 16 14 13 39 39 H 1.08998 * 109.46967 * 299.99566 * 19 17 16 40 40 H 1.08995 * 109.46987 * 60.00166 * 19 17 16 41 41 H 0.97004 * 126.68748 * 61.44191 * 22 20 19 42 42 H 0.97000 * 124.17711 * 180.02562 * 25 23 22 43 43 H 1.09001 * 109.44394 * 150.69023 * 28 9 7 44 44 H 1.08997 * 109.45384 * 30.76699 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0601 -1.2194 0.2531 9 7 1.3636 -2.3662 -0.3191 10 6 0.1797 -2.2996 -1.1980 11 6 0.1711 -3.4257 -2.2476 12 6 1.5624 -3.6371 -2.7915 13 6 2.2707 -4.7082 -1.9676 14 6 2.9227 -4.2032 -0.7496 15 1 3.6412 -3.4292 -1.0195 16 7 3.6265 -5.3028 -0.0849 17 6 4.6753 -5.0424 0.7207 18 8 5.0366 -3.8979 0.8948 19 6 5.3996 -6.1736 1.4040 20 6 6.5401 -5.6094 2.2537 21 1 6.1611 -4.8719 2.9611 22 7 7.5815 -5.0176 1.3960 23 6 8.7098 -5.7135 1.6251 24 8 9.7689 -5.4832 1.0753 25 7 8.5356 -6.6874 2.5258 26 6 7.2642 -6.7247 2.9815 27 8 6.7984 -7.4883 3.7997 28 6 1.8692 -3.6097 0.2179 29 1 -0.4850 0.8400 0.0004 30 1 -0.7195 -2.3786 -0.5869 31 1 0.1735 -1.3380 -1.7111 32 1 -0.4988 -3.1550 -3.0637 33 1 -0.1802 -4.3481 -1.7849 34 1 2.1219 -2.7036 -2.7322 35 1 1.5014 -3.9591 -3.8310 36 1 1.5396 -5.4641 -1.6808 37 1 3.0284 -5.1809 -2.5925 38 1 3.3377 -6.2182 -0.2245 39 1 4.7041 -6.7161 2.0443 40 1 5.8061 -6.8509 0.6531 41 1 7.4744 -4.2719 0.7850 42 1 9.2362 -7.2916 2.8174 43 1 1.0466 -4.3152 0.3358 44 1 2.3305 -3.4253 1.1881 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034253201.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:47 Heat of formation + Delta-G solvation = -89.219597 kcal Electronic energy + Delta-G solvation = -28275.148925 eV Core-core repulsion = 24227.626568 eV Total energy + Delta-G solvation = -4047.522357 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.41067 -40.95687 -39.75463 -39.22284 -37.35173 -36.18314 -35.01443 -34.78228 -32.89595 -32.38846 -31.01950 -27.92314 -26.86922 -25.66678 -24.74017 -23.75692 -22.59681 -21.57429 -21.38042 -20.77956 -19.44015 -18.56637 -18.39454 -17.79221 -17.66038 -17.28704 -16.89658 -16.66917 -16.48966 -16.23895 -16.01323 -15.51527 -15.38404 -15.01230 -14.84187 -14.67936 -14.21189 -14.01713 -13.93561 -13.74406 -13.11838 -12.97615 -12.89167 -12.75980 -12.45288 -12.28841 -12.23301 -12.02827 -11.61232 -11.51721 -11.47861 -11.43542 -11.34675 -11.10495 -10.82015 -10.56234 -10.47909 -10.05639 -8.60375 -7.85362 -5.30544 0.46635 1.39224 1.44402 1.45077 1.52501 1.72015 1.89882 2.00688 2.31361 2.53157 2.95050 3.28080 3.44964 3.74422 3.87823 3.92735 3.97754 4.16096 4.30201 4.37507 4.48360 4.51846 4.57433 4.65937 4.78283 4.80406 5.03035 5.06106 5.09026 5.18398 5.27057 5.31842 5.39210 5.47295 5.66120 5.70551 5.72975 5.74870 5.85601 5.87046 6.31944 6.42904 6.68432 7.07620 7.20926 7.40395 7.98003 8.32745 9.18879 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.014531 B = 0.003301 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.471844 B = 8481.455931 C = 9457.165024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.043 4.043 3 Si 0.955 3.045 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.258 4.258 8 H 0.053 0.947 9 N -0.597 5.597 10 C 0.184 3.816 11 C -0.131 4.131 12 C -0.099 4.099 13 C -0.109 4.109 14 C 0.135 3.865 15 H 0.048 0.952 16 N -0.706 5.706 17 C 0.508 3.492 18 O -0.576 6.576 19 C -0.129 4.129 20 C 0.107 3.893 21 H 0.138 0.862 22 N -0.706 5.706 23 C 0.705 3.295 24 O -0.586 6.586 25 N -0.666 5.666 26 C 0.547 3.453 27 O -0.480 6.480 28 C 0.158 3.842 29 H 0.249 0.751 30 H -0.007 1.007 31 H 0.037 0.963 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.038 0.962 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.416 0.584 39 H 0.147 0.853 40 H 0.131 0.869 41 H 0.445 0.555 42 H 0.443 0.557 43 H 0.047 0.953 44 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.139 -19.344 -0.423 21.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.239 4.239 3 Si 0.784 3.216 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.389 4.389 8 H 0.071 0.929 9 N -0.319 5.319 10 C 0.059 3.941 11 C -0.169 4.169 12 C -0.137 4.137 13 C -0.147 4.147 14 C 0.027 3.973 15 H 0.066 0.934 16 N -0.358 5.358 17 C 0.295 3.705 18 O -0.456 6.456 19 C -0.170 4.170 20 C -0.003 4.003 21 H 0.156 0.844 22 N -0.370 5.370 23 C 0.405 3.595 24 O -0.463 6.463 25 N -0.338 5.338 26 C 0.333 3.667 27 O -0.350 6.350 28 C 0.029 3.971 29 H 0.058 0.942 30 H 0.011 0.989 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.254 0.746 39 H 0.165 0.835 40 H 0.149 0.851 41 H 0.291 0.709 42 H 0.287 0.713 43 H 0.065 0.935 44 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 9.463 -18.674 -0.149 20.935 hybrid contribution 0.358 1.290 0.081 1.342 sum 9.821 -17.384 -0.068 19.966 Atomic orbital electron populations 1.70202 1.06221 1.25609 1.55838 1.25610 0.95943 1.00892 1.01409 0.85532 0.77753 0.80227 0.78098 1.20650 1.21642 1.20855 1.19341 0.92150 0.86386 1.41023 0.92876 1.43714 1.32224 1.02021 1.53960 1.20843 0.86793 0.96448 0.89978 1.21932 0.97547 0.99074 0.98370 1.20803 0.95564 0.98515 0.98826 1.20510 1.00350 0.98678 0.95129 1.20672 0.94185 0.88486 0.93949 0.93357 1.45903 1.31548 1.10812 1.47576 1.20878 0.80326 0.90297 0.78967 1.90779 1.67243 1.24408 1.63131 1.21873 0.96786 0.97144 1.01186 1.21871 0.89552 0.95055 0.93807 0.84426 1.45726 1.08516 1.36660 1.46126 1.15931 0.84394 0.79692 0.79522 1.91039 1.28310 1.71643 1.55290 1.44202 1.14689 1.34029 1.40880 1.20600 0.82149 0.83558 0.80352 1.90872 1.71662 1.41421 1.31067 1.21023 0.94542 0.87461 0.94035 0.94220 0.98875 0.94397 0.91439 0.91535 0.94302 0.90212 0.90172 0.90630 0.74649 0.83500 0.85097 0.70899 0.71289 0.93494 0.96144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.23 11.01 21.65 0.24 -55.00 16 2 C -0.04 -2.45 4.87 84.86 0.41 -2.04 16 3 Si 0.96 46.40 29.58 68.60 2.03 48.43 16 4 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 6 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 7 C -0.26 -14.46 9.44 84.03 0.79 -13.66 16 8 H 0.05 3.08 7.88 -2.91 -0.02 3.06 16 9 N -0.60 -29.09 2.27 -698.37 -1.59 -30.67 16 10 C 0.18 8.58 4.66 86.49 0.40 8.98 16 11 C -0.13 -4.31 5.71 30.22 0.17 -4.14 16 12 C -0.10 -2.93 5.50 29.76 0.16 -2.77 16 13 C -0.11 -2.66 4.54 28.61 0.13 -2.53 16 14 C 0.13 4.10 2.33 43.79 0.10 4.20 16 15 H 0.05 1.90 7.57 -2.38 -0.02 1.88 16 16 N -0.71 -14.54 5.06 -448.26 -2.27 -16.81 16 17 C 0.51 11.20 7.66 87.66 0.67 11.87 16 18 O -0.58 -18.69 14.65 -3.03 -0.04 -18.73 16 19 C -0.13 -1.53 5.46 29.85 0.16 -1.37 16 20 C 0.11 1.59 3.16 44.37 0.14 1.73 16 21 H 0.14 2.23 8.01 -2.39 -0.02 2.21 16 22 N -0.71 -12.86 5.88 -459.60 -2.70 -15.57 16 23 C 0.71 13.92 9.00 179.44 1.61 15.54 16 24 O -0.59 -16.32 18.04 -3.81 -0.07 -16.39 16 25 N -0.67 -9.11 5.71 -440.69 -2.52 -11.63 16 26 C 0.55 7.93 8.17 87.89 0.72 8.65 16 27 O -0.48 -9.05 18.02 -2.86 -0.05 -9.10 16 28 C 0.16 6.21 5.23 87.38 0.46 6.67 16 29 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 30 H -0.01 -0.35 8.03 -2.38 -0.02 -0.37 16 31 H 0.04 2.02 6.33 -2.39 -0.02 2.01 16 32 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.07 1.93 7.32 -2.38 -0.02 1.91 16 34 H 0.04 1.46 7.48 -2.39 -0.02 1.45 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.08 1.61 7.36 -2.39 -0.02 1.59 16 37 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.42 4.97 8.57 -92.71 -0.79 4.17 16 39 H 0.15 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.45 9.26 8.18 -92.71 -0.76 8.50 16 42 H 0.44 4.18 8.96 -92.71 -0.83 3.35 16 43 H 0.05 1.68 8.07 -2.39 -0.02 1.66 16 44 H 0.02 0.90 7.96 -2.39 -0.02 0.88 16 Total: -1.00 -77.52 358.05 -2.35 -79.87 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -1.32 Total: 14.46 kcal Atomic # 6 Polarization: 25.20 SS G_CDS: 5.94 Total: 31.14 kcal Atomic # 7 Polarization: -120.83 SS G_CDS: -8.84 Total: -129.67 kcal Atomic # 8 Polarization: -44.06 SS G_CDS: -0.16 Total: -44.23 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -77.52 -2.35 -79.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034253201.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.349 kcal (2) G-P(sol) polarization free energy of solvation -77.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds