Wall clock time and date at job start Tue Mar 31 2020 05:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00479 * 2 1 4 4 H 1.48503 * 109.47151 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47196 * 300.00446 * 3 2 1 6 6 H 1.48500 * 109.46879 * 60.00302 * 3 2 1 7 7 C 1.38811 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00547 * 179.97438 * 7 2 1 9 9 N 1.36945 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.46493 * 119.99892 * 179.72716 * 9 7 2 11 11 H 1.09003 * 109.47333 * 324.99731 * 10 9 7 12 12 C 1.52999 * 109.47638 * 84.99908 * 10 9 7 13 13 C 1.52994 * 109.47449 * 179.97438 * 12 10 9 14 14 C 1.52992 * 109.47441 * 299.99807 * 13 12 10 15 15 H 1.09003 * 109.47099 * 300.00274 * 14 13 12 16 16 N 1.46498 * 109.47592 * 179.97438 * 14 13 12 17 17 C 1.34773 * 119.99843 * 85.00108 * 16 14 13 18 18 O 1.21281 * 119.99888 * 0.02562 * 17 16 14 19 19 C 1.50702 * 120.00223 * 180.02562 * 17 16 14 20 20 N 1.46495 * 109.47413 * 179.97438 * 19 17 16 21 21 C 1.47311 * 126.69258 * 89.99813 * 20 19 17 22 22 C 1.51578 * 103.59795 * 179.97438 * 21 20 19 23 23 O 1.21228 * 127.16106 * 180.02562 * 22 21 20 24 24 N 1.34766 * 105.68103 * 0.02562 * 22 21 20 25 25 C 1.33793 * 111.64708 * 359.76605 * 24 22 21 26 26 O 1.21539 * 123.77490 * 180.24813 * 25 24 22 27 27 C 1.53008 * 109.47047 * 59.99823 * 14 13 12 28 28 C 1.52994 * 109.47145 * 300.00359 * 27 14 13 29 29 H 0.97004 * 119.99151 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99317 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.46886 * 300.00173 * 12 10 9 32 32 H 1.09003 * 109.46903 * 59.99559 * 12 10 9 33 33 H 1.09003 * 109.47176 * 179.97438 * 13 12 10 34 34 H 1.09003 * 109.47197 * 60.00021 * 13 12 10 35 35 H 0.97004 * 120.00097 * 265.00345 * 16 14 13 36 36 H 1.09001 * 109.46662 * 300.00310 * 19 17 16 37 37 H 1.09000 * 109.46975 * 59.99492 * 19 17 16 38 38 H 1.08997 * 110.60003 * 298.49739 * 21 20 19 39 39 H 1.09000 * 110.59576 * 61.28110 * 21 20 19 40 40 H 0.97005 * 124.17409 * 180.02562 * 24 22 21 41 41 H 1.08999 * 109.46839 * 180.02562 * 27 14 13 42 42 H 1.09003 * 109.46803 * 60.00269 * 27 14 13 43 43 H 1.09003 * 109.47197 * 299.99669 * 28 27 14 44 44 H 1.08995 * 109.47604 * 179.97438 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0578 -3.6568 -0.0082 11 1 2.9663 -3.5488 -0.6008 12 6 2.4271 -4.0401 1.4262 13 6 3.1915 -5.3654 1.4193 14 6 2.3115 -6.4586 0.8099 15 1 1.4030 -6.5662 1.4026 16 7 3.0436 -7.7275 0.8028 17 6 3.0392 -8.5142 1.8971 18 8 2.4288 -8.1718 2.8876 19 6 3.7928 -9.8192 1.8900 20 7 3.6335 -10.4822 3.1866 21 6 2.5748 -11.4344 3.5642 22 6 2.9083 -11.7871 5.0001 23 8 2.3039 -12.5459 5.7271 24 7 4.0166 -11.0816 5.3005 25 6 4.4282 -10.3438 4.2631 26 8 5.4091 -9.6266 4.2910 27 6 1.9422 -6.0753 -0.6246 28 6 1.1778 -4.7500 -0.6177 29 1 -0.4849 0.8401 0.0004 30 1 0.3554 -2.3880 -0.0016 31 1 3.0537 -3.2611 1.8606 32 1 1.5186 -4.1481 2.0188 33 1 3.4550 -5.6382 2.4412 34 1 4.1000 -5.2578 0.8267 35 1 3.5316 -8.0014 0.0104 36 1 3.3993 -10.4616 1.1022 37 1 4.8502 -9.6272 1.7079 38 1 1.5945 -10.9618 3.5032 39 1 2.6121 -12.3204 2.9304 40 1 4.4630 -11.1086 6.1613 41 1 1.3149 -6.8540 -1.0585 42 1 2.8506 -5.9678 -1.2172 43 1 0.2693 -4.8576 -0.0250 44 1 0.9150 -4.4768 -1.6396 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034754983.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:03 Heat of formation + Delta-G solvation = -103.701520 kcal Electronic energy + Delta-G solvation = -27227.273661 eV Core-core repulsion = 23179.123321 eV Total energy + Delta-G solvation = -4048.150340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.26930 -40.99815 -39.76328 -39.21267 -37.30389 -36.37358 -35.45897 -34.63881 -32.53808 -31.67487 -30.55721 -28.91026 -27.66643 -25.55046 -23.71218 -23.43687 -23.06733 -22.11728 -21.37715 -20.79561 -19.32109 -19.13860 -18.56116 -17.81760 -17.50416 -17.30367 -16.88646 -16.84231 -16.17833 -15.83934 -15.72211 -15.39904 -15.35103 -15.09818 -15.06905 -14.84063 -14.64722 -14.07143 -13.92496 -13.47563 -13.17132 -13.10792 -13.06422 -12.84967 -12.42604 -12.28890 -12.17060 -12.10284 -12.01754 -11.67389 -11.50272 -11.46023 -11.44565 -11.23225 -11.16787 -10.85113 -10.03407 -9.97306 -8.99658 -7.94434 -5.22234 0.55857 1.11240 1.45810 1.46906 1.56498 1.64335 1.87973 2.00325 2.37286 2.56042 3.05917 3.38657 3.71012 3.78555 3.80789 3.90864 3.93778 4.28549 4.30947 4.36241 4.38911 4.42121 4.42999 4.55202 4.61260 4.66149 4.71252 4.88593 5.01812 5.02930 5.13945 5.15669 5.22035 5.27285 5.29740 5.48580 5.56689 5.57477 5.64921 5.92393 6.29031 6.31660 6.63354 6.99769 7.33499 7.34216 8.12457 8.34122 9.29472 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.025932 B = 0.002140 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.494398 B =13080.802675 C =13360.048503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.291 1.291 6 H -0.297 1.297 7 C -0.234 4.234 8 H 0.074 0.926 9 N -0.740 5.740 10 C 0.172 3.828 11 H 0.048 0.952 12 C -0.123 4.123 13 C -0.113 4.113 14 C 0.155 3.845 15 H 0.063 0.937 16 N -0.705 5.705 17 C 0.484 3.516 18 O -0.584 6.584 19 C 0.136 3.864 20 N -0.604 5.604 21 C 0.071 3.929 22 C 0.531 3.469 23 O -0.505 6.505 24 N -0.676 5.676 25 C 0.701 3.299 26 O -0.584 6.584 27 C -0.103 4.103 28 C -0.114 4.114 29 H 0.250 0.750 30 H 0.371 0.629 31 H 0.035 0.965 32 H 0.036 0.964 33 H 0.039 0.961 34 H 0.076 0.924 35 H 0.422 0.578 36 H 0.179 0.821 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.174 0.826 40 H 0.436 0.564 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.051 0.949 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.461 -30.666 -1.163 31.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.799 3.201 4 H -0.191 1.191 5 H -0.219 1.219 6 H -0.225 1.225 7 C -0.366 4.366 8 H 0.092 0.908 9 N -0.379 5.379 10 C 0.064 3.936 11 H 0.066 0.934 12 C -0.164 4.164 13 C -0.152 4.152 14 C 0.050 3.950 15 H 0.081 0.919 16 N -0.358 5.358 17 C 0.270 3.730 18 O -0.463 6.463 19 C 0.012 3.988 20 N -0.341 5.341 21 C -0.054 4.054 22 C 0.319 3.681 23 O -0.377 6.377 24 N -0.345 5.345 25 C 0.402 3.598 26 O -0.460 6.460 27 C -0.141 4.141 28 C -0.153 4.153 29 H 0.059 0.941 30 H 0.203 0.797 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.260 0.740 36 H 0.196 0.804 37 H 0.152 0.848 38 H 0.150 0.850 39 H 0.191 0.809 40 H 0.279 0.721 41 H 0.113 0.887 42 H 0.108 0.892 43 H 0.070 0.930 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.338 -30.298 -0.307 31.426 hybrid contribution 0.178 1.690 0.852 1.901 sum 8.516 -28.608 0.545 29.853 Atomic orbital electron populations 1.69824 1.06562 1.25825 1.59994 1.25545 0.96390 1.01039 1.04207 0.85120 0.78280 0.80098 0.76591 1.19060 1.21858 1.22457 1.19653 0.91351 0.85352 1.40256 0.90778 1.42697 1.05470 1.01207 1.88542 1.20507 0.94627 0.85106 0.93354 0.93417 1.22032 0.98809 0.95984 0.99607 1.21759 0.99137 0.94180 1.00127 1.20769 0.94182 0.82410 0.97675 0.91898 1.45856 1.52927 1.20211 1.16771 1.21954 0.80999 0.87371 0.82675 1.90748 1.45732 1.75176 1.34644 1.21518 1.03574 0.90544 0.83167 1.47111 1.28203 1.46240 1.12593 1.22786 0.94023 0.96303 0.92254 1.21183 0.78612 0.77643 0.90660 1.90859 1.54068 1.35136 1.57605 1.44325 1.29602 1.43592 1.17021 1.16003 0.82909 0.79627 0.81300 1.91012 1.29271 1.42788 1.82951 1.21644 1.01783 0.96406 0.94278 1.21651 0.98326 0.94396 1.00946 0.94140 0.79722 0.94623 0.94528 0.94243 0.90578 0.73992 0.80391 0.84800 0.84978 0.80893 0.72101 0.88654 0.89244 0.93019 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.23 13.06 21.65 0.28 -59.95 16 2 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 3 Si 0.97 46.82 29.55 68.60 2.03 48.85 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 6 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 7 C -0.23 -13.10 9.93 84.03 0.83 -12.27 16 8 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.74 -37.44 5.12 -322.94 -1.65 -39.10 16 10 C 0.17 6.55 2.77 44.99 0.12 6.68 16 11 H 0.05 1.81 8.08 -2.39 -0.02 1.79 16 12 C -0.12 -4.57 5.50 30.59 0.17 -4.40 16 13 C -0.11 -3.18 5.49 30.59 0.17 -3.01 16 14 C 0.15 3.38 2.45 44.99 0.11 3.49 16 15 H 0.06 1.74 7.58 -2.39 -0.02 1.72 16 16 N -0.70 -9.48 5.08 -442.53 -2.25 -11.73 16 17 C 0.48 8.09 7.86 87.66 0.69 8.78 16 18 O -0.58 -16.66 16.09 -3.03 -0.05 -16.70 16 19 C 0.14 0.88 6.63 85.63 0.57 1.45 16 20 N -0.60 -6.90 2.51 -846.26 -2.12 -9.02 16 21 C 0.07 0.45 7.66 85.76 0.66 1.11 16 22 C 0.53 7.11 8.81 87.94 0.77 7.89 16 23 O -0.50 -9.97 18.02 -2.87 -0.05 -10.02 16 24 N -0.68 -9.89 5.70 -441.13 -2.52 -12.41 16 25 C 0.70 13.09 8.68 179.44 1.56 14.65 16 26 O -0.58 -15.90 17.71 -3.84 -0.07 -15.97 16 27 C -0.10 -1.91 5.39 30.60 0.16 -1.74 16 28 C -0.11 -3.33 5.39 30.59 0.16 -3.16 16 29 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 30 H 0.37 20.26 7.79 -92.71 -0.72 19.54 16 31 H 0.03 1.47 8.14 -2.39 -0.02 1.46 16 32 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.42 1.96 8.60 -92.71 -0.80 1.17 16 36 H 0.18 -0.87 8.14 -2.39 -0.02 -0.89 16 37 H 0.13 0.68 8.02 -2.39 -0.02 0.66 16 38 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.17 -0.46 8.14 -2.39 -0.02 -0.48 16 40 H 0.44 5.30 8.96 -92.70 -0.83 4.47 16 41 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -88.67 370.98 -1.24 -89.91 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: -1.29 Total: 20.86 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 6.45 Total: 15.28 kcal Atomic # 7 Polarization: -123.95 SS G_CDS: -8.26 Total: -132.21 kcal Atomic # 8 Polarization: -42.53 SS G_CDS: -0.17 Total: -42.69 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -88.67 -1.24 -89.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034754983.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.789 kcal (2) G-P(sol) polarization free energy of solvation -88.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds