Wall clock time and date at job start Tue Mar 31 2020 05:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86795 * 120.00143 * 2 1 4 4 H 1.48499 * 109.47435 * 274.74290 * 3 2 1 5 5 H 1.48498 * 109.47057 * 34.74596 * 3 2 1 6 6 H 1.48506 * 109.47308 * 154.74404 * 3 2 1 7 7 C 1.38820 * 119.99997 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99787 * 199.51784 * 7 2 1 9 9 N 1.36932 * 120.00101 * 19.51574 * 7 2 1 10 10 C 1.50168 * 120.53906 * 31.16375 * 9 7 2 11 11 C 1.46243 * 107.52961 * 109.56521 * 10 9 7 12 12 C 1.52535 * 114.27288 * 58.41195 * 11 10 9 13 13 C 1.50127 * 105.41533 * 270.59229 * 12 11 10 14 14 H 1.08994 * 109.20812 * 337.38788 * 13 12 11 15 15 N 1.46503 * 109.20595 * 218.02689 * 13 12 11 16 16 C 1.34772 * 119.99562 * 154.36121 * 15 13 12 17 17 O 1.21283 * 120.00529 * 0.02562 * 16 15 13 18 18 C 1.50704 * 119.99883 * 179.97438 * 16 15 13 19 19 N 1.46498 * 109.47192 * 180.02562 * 18 16 15 20 20 C 1.34767 * 124.17728 * 269.98495 * 19 18 16 21 21 O 1.21233 * 127.15851 * 0.05419 * 20 19 18 22 22 C 1.51581 * 105.68452 * 180.02562 * 20 19 18 23 23 N 1.47307 * 103.59367 * 359.97438 * 22 20 19 24 24 C 1.33797 * 124.17964 * 90.02299 * 19 18 16 25 25 O 1.21537 * 123.76557 * 359.96607 * 24 19 18 26 26 C 1.54842 * 110.77735 * 97.70787 * 13 12 11 27 27 C 1.43432 * 120.53786 * 211.15113 * 9 7 2 28 28 H 0.96996 * 120.00410 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.84595 * 350.06485 * 10 9 7 30 30 H 1.08992 * 109.85020 * 229.07274 * 10 9 7 31 31 H 1.08998 * 108.52680 * 297.16915 * 11 10 9 32 32 H 1.09000 * 108.52404 * 179.64569 * 11 10 9 33 33 H 1.09002 * 110.24508 * 151.61802 * 12 11 10 34 34 H 1.09001 * 110.36793 * 29.62855 * 12 11 10 35 35 H 0.96996 * 120.00211 * 334.36095 * 15 13 12 36 36 H 1.08996 * 109.47108 * 60.00023 * 18 16 15 37 37 H 1.09004 * 109.47226 * 300.00095 * 18 16 15 38 38 H 1.09005 * 110.59930 * 241.46759 * 22 20 19 39 39 H 1.08996 * 110.60039 * 118.52841 * 22 20 19 40 40 H 0.96997 * 126.68832 * 180.26676 * 23 22 20 41 41 H 1.08994 * 109.35940 * 81.31334 * 26 13 12 42 42 H 1.08997 * 109.35800 * 200.90726 * 26 13 12 43 43 H 1.08997 * 108.16384 * 33.30400 * 27 9 7 44 44 H 1.09005 * 108.16299 * 150.08211 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3974 2.1043 -1.3952 5 1 1.5014 2.6216 0.7979 6 1 3.5943 1.4132 0.5974 7 6 2.0102 -1.2022 -0.0005 8 1 3.0436 -1.2292 0.3119 9 7 1.3846 -2.3539 -0.3972 10 6 0.2987 -2.3142 -1.4337 11 6 0.8289 -2.9274 -2.6509 12 6 1.3052 -4.3654 -2.4723 13 6 2.7496 -4.2611 -2.0764 14 1 3.1443 -3.3012 -2.4093 15 7 3.5042 -5.3410 -2.7173 16 6 4.8222 -5.1923 -2.9562 17 8 5.3837 -4.1647 -2.6403 18 6 5.5986 -6.3033 -3.6149 19 7 6.9992 -5.8997 -3.7620 20 6 7.4931 -5.2584 -4.8395 21 8 6.8852 -4.9187 -5.8319 22 6 8.9667 -5.0496 -4.5523 23 7 9.1490 -5.6536 -3.2212 24 6 7.9462 -6.1229 -2.8436 25 8 7.7422 -6.6860 -1.7860 26 6 2.9073 -4.3715 -0.5400 27 6 1.7560 -3.6177 0.1703 28 1 -0.4850 0.8400 0.0004 29 1 0.0152 -1.2808 -1.6332 30 1 -0.5676 -2.8755 -1.0837 31 1 1.6666 -2.3265 -3.0047 32 1 0.0502 -2.9128 -3.4135 33 1 1.2096 -4.9135 -3.4096 34 1 0.7335 -4.8597 -1.6869 35 1 3.0552 -6.1629 -2.9696 36 1 5.1745 -6.5099 -4.5975 37 1 5.5423 -7.2008 -2.9989 38 1 9.2055 -3.9863 -4.5266 39 1 9.5786 -5.5631 -5.2939 40 1 9.9746 -5.7007 -2.7143 41 1 2.8857 -5.4217 -0.2491 42 1 3.8611 -3.9358 -0.2425 43 1 2.0472 -3.4519 1.2075 44 1 0.8780 -4.2636 0.1654 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052919338.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:54 Heat of formation + Delta-G solvation = -71.869826 kcal Electronic energy + Delta-G solvation = -28485.449186 eV Core-core repulsion = 24438.679172 eV Total energy + Delta-G solvation = -4046.770014 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.40657 -41.01534 -39.70213 -39.33891 -37.22966 -36.38348 -35.64297 -34.28946 -33.31356 -31.98755 -29.74275 -28.49825 -27.83787 -25.83329 -24.89126 -23.96513 -22.60776 -21.94266 -21.07623 -20.83819 -19.14508 -18.84125 -18.55328 -17.87158 -17.44509 -17.34066 -17.01228 -16.47212 -16.31605 -16.24278 -15.79847 -15.70173 -15.31421 -15.14955 -15.04267 -14.97872 -14.35165 -14.11307 -14.00540 -13.53267 -13.44803 -13.21079 -13.12442 -12.77289 -12.61201 -12.23754 -12.20114 -12.06825 -11.87537 -11.67448 -11.57715 -11.40949 -11.38537 -11.20027 -10.72391 -10.51298 -10.41143 -10.06706 -8.63682 -7.90950 -5.37870 0.58747 1.01751 1.39685 1.42180 1.50408 1.51193 1.81057 2.22913 2.32348 2.47665 3.01517 3.19348 3.58991 3.63984 3.74797 3.90518 4.03394 4.12763 4.22973 4.29140 4.29740 4.33031 4.41524 4.48350 4.62776 4.64461 4.77975 4.88362 4.96938 5.06207 5.20440 5.23115 5.33210 5.42042 5.59037 5.61748 5.68146 5.78916 5.79724 5.94718 6.30373 6.42791 6.52134 7.05072 7.11523 7.22093 7.86255 8.36660 9.13247 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.015689 B = 0.003315 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.236888 B = 8445.641464 C = 9075.747724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.037 4.037 3 Si 0.952 3.048 4 H -0.286 1.286 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.262 4.262 8 H 0.043 0.957 9 N -0.600 5.600 10 C 0.152 3.848 11 C -0.125 4.125 12 C -0.105 4.105 13 C 0.167 3.833 14 H 0.044 0.956 15 N -0.705 5.705 16 C 0.488 3.512 17 O -0.584 6.584 18 C 0.102 3.898 19 N -0.569 5.569 20 C 0.516 3.484 21 O -0.500 6.500 22 C 0.075 3.925 23 N -0.709 5.709 24 C 0.698 3.302 25 O -0.584 6.584 26 C -0.138 4.138 27 C 0.158 3.842 28 H 0.252 0.748 29 H 0.065 0.935 30 H 0.028 0.972 31 H 0.030 0.970 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.420 0.580 36 H 0.155 0.845 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.171 0.829 40 H 0.454 0.546 41 H 0.084 0.916 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.328 -18.183 -13.213 26.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.233 4.233 3 Si 0.781 3.219 4 H -0.213 1.213 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.393 4.393 8 H 0.061 0.939 9 N -0.322 5.322 10 C 0.028 3.972 11 C -0.165 4.165 12 C -0.143 4.143 13 C 0.062 3.938 14 H 0.062 0.938 15 N -0.358 5.358 16 C 0.273 3.727 17 O -0.464 6.464 18 C -0.023 4.023 19 N -0.314 5.314 20 C 0.306 3.694 21 O -0.372 6.372 22 C -0.051 4.051 23 N -0.374 5.374 24 C 0.399 3.601 25 O -0.461 6.461 26 C -0.179 4.179 27 C 0.030 3.970 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.089 0.911 33 H 0.118 0.882 34 H 0.103 0.897 35 H 0.258 0.742 36 H 0.173 0.827 37 H 0.166 0.834 38 H 0.163 0.837 39 H 0.188 0.812 40 H 0.302 0.698 41 H 0.102 0.898 42 H 0.037 0.963 43 H 0.036 0.964 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 14.083 -17.439 -12.970 25.898 hybrid contribution 0.453 1.129 0.614 1.363 sum 14.536 -16.310 -12.357 25.100 Atomic orbital electron populations 1.70113 1.06204 1.25872 1.54283 1.25572 0.95869 1.00795 1.01077 0.85491 0.78302 0.80643 0.77487 1.21324 1.21195 1.20370 1.19217 0.92999 0.87322 1.39743 0.93882 1.44133 1.41631 1.01679 1.44780 1.20249 0.89098 1.00566 0.87280 1.20826 1.00444 0.96094 0.99102 1.21266 0.93193 0.96869 1.02944 1.20822 0.91915 0.89217 0.91843 0.93780 1.46117 1.08270 1.20517 1.60923 1.21507 0.83434 0.88971 0.78738 1.90740 1.70077 1.31758 1.53776 1.21657 0.77928 0.96655 1.06044 1.45981 1.10317 1.55263 1.19811 1.21654 0.91805 0.74674 0.81243 1.90816 1.67977 1.49199 1.29182 1.22725 0.91588 1.04533 0.86259 1.45335 1.09919 1.61030 1.21146 1.16019 0.82266 0.79267 0.82588 1.90993 1.83103 1.48200 1.23783 1.23130 0.98956 1.00351 0.95505 1.20363 0.95281 0.87325 0.94072 0.93848 0.91713 0.95405 0.95124 0.91124 0.88201 0.89747 0.74157 0.82722 0.83390 0.83741 0.81174 0.69828 0.89791 0.96343 0.96357 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.71 11.25 21.65 0.24 -54.47 16 2 C -0.04 -2.12 4.93 84.87 0.42 -1.70 16 3 Si 0.95 47.28 29.60 68.60 2.03 49.31 16 4 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 7 C -0.26 -15.36 9.54 84.04 0.80 -14.56 16 8 H 0.04 2.63 7.90 -2.91 -0.02 2.61 16 9 N -0.60 -30.85 2.56 -707.91 -1.81 -32.66 16 10 C 0.15 7.08 5.37 83.58 0.45 7.53 16 11 C -0.13 -4.69 5.20 28.36 0.15 -4.54 16 12 C -0.11 -3.02 5.33 29.51 0.16 -2.87 16 13 C 0.17 5.67 2.23 44.69 0.10 5.77 16 14 H 0.04 1.98 6.25 -2.39 -0.01 1.97 16 15 N -0.71 -17.75 4.96 -443.95 -2.20 -19.96 16 16 C 0.49 14.38 7.86 87.66 0.69 15.06 16 17 O -0.58 -24.23 16.09 -3.04 -0.05 -24.28 16 18 C 0.10 1.96 6.18 85.63 0.53 2.49 16 19 N -0.57 -12.25 2.09 -777.22 -1.63 -13.88 16 20 C 0.52 9.98 8.32 87.94 0.73 10.71 16 21 O -0.50 -12.69 17.76 -2.88 -0.05 -12.74 16 22 C 0.07 0.64 7.97 85.76 0.68 1.32 16 23 N -0.71 -8.90 6.58 -480.33 -3.16 -12.06 16 24 C 0.70 15.92 8.62 179.44 1.55 17.46 16 25 O -0.58 -18.03 17.48 -3.83 -0.07 -18.09 16 26 C -0.14 -5.19 5.98 31.86 0.19 -5.00 16 27 C 0.16 6.86 5.18 87.58 0.45 7.31 16 28 H 0.25 14.45 8.31 -92.71 -0.77 13.67 16 29 H 0.06 3.51 5.65 -2.39 -0.01 3.50 16 30 H 0.03 1.25 8.12 -2.39 -0.02 1.23 16 31 H 0.03 1.31 6.93 -2.39 -0.02 1.29 16 32 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.10 2.10 7.86 -2.39 -0.02 2.09 16 34 H 0.08 2.31 6.29 -2.39 -0.02 2.30 16 35 H 0.42 6.35 8.49 -92.71 -0.79 5.56 16 36 H 0.16 1.96 8.01 -2.39 -0.02 1.94 16 37 H 0.15 2.17 7.86 -2.38 -0.02 2.15 16 38 H 0.15 0.84 8.14 -2.38 -0.02 0.82 16 39 H 0.17 0.00 8.14 -2.39 -0.02 -0.02 16 40 H 0.45 3.28 8.96 -92.71 -0.83 2.45 16 41 H 0.08 2.60 8.12 -2.39 -0.02 2.58 16 42 H 0.02 0.80 8.14 -2.39 -0.02 0.79 16 43 H 0.02 0.85 8.00 -2.39 -0.02 0.83 16 44 H 0.05 1.97 6.88 -2.38 -0.02 1.95 16 Total: -1.00 -89.03 358.60 -0.36 -89.39 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -0.56 Total: 10.42 kcal Atomic # 6 Polarization: 32.11 SS G_CDS: 6.90 Total: 39.01 kcal Atomic # 7 Polarization: -124.46 SS G_CDS: -8.56 Total: -133.02 kcal Atomic # 8 Polarization: -54.95 SS G_CDS: -0.17 Total: -55.12 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -89.03 -0.36 -89.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052919338.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.523 kcal (2) G-P(sol) polarization free energy of solvation -89.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds