Wall clock time and date at job start Tue Mar 31 2020 05:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34236 * 116.99755 * 2 1 4 4 O 1.20823 * 120.00175 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99853 * 179.97438 * 3 2 1 6 6 H 1.08999 * 115.55220 * 57.96825 * 5 3 2 7 7 C 1.52995 * 117.51858 * 203.67003 * 5 3 2 8 8 C 1.52992 * 60.00288 * 107.47903 * 7 5 3 9 9 H 1.09010 * 117.51784 * 107.47798 * 8 7 5 10 10 C 1.50697 * 117.50474 * 252.50920 * 8 7 5 11 11 O 1.21284 * 119.99336 * 351.02394 * 10 8 7 12 12 N 1.34774 * 120.00284 * 171.01858 * 10 8 7 13 13 C 1.47123 * 121.06018 * 0.02562 * 12 10 8 14 14 C 1.53229 * 108.72469 * 232.31472 * 13 12 10 15 15 O 1.43123 * 109.34947 * 305.80255 * 14 13 12 16 16 C 1.42357 * 113.99515 * 59.78431 * 15 14 13 17 17 C 1.52934 * 114.29658 * 74.94911 * 16 15 14 18 18 N 1.47167 * 87.83885 * 88.27891 * 17 16 15 19 19 C 1.36937 * 135.99681 * 206.64077 * 18 17 16 20 20 H 1.07998 * 120.00154 * 4.42548 * 19 18 17 21 21 C 1.38812 * 120.00200 * 184.42022 * 19 18 17 22 22 N 1.31618 * 119.99798 * 6.48297 * 21 19 18 23 23 Si 1.86800 * 120.00198 * 186.47575 * 21 19 18 24 24 H 1.48503 * 109.46522 * 94.86767 * 23 21 19 25 25 H 1.48492 * 109.47236 * 214.86729 * 23 21 19 26 26 H 1.48500 * 109.46974 * 334.87187 * 23 21 19 27 27 C 1.47175 * 88.00796 * 26.90237 * 18 17 16 28 28 C 1.47358 * 121.05964 * 180.02562 * 12 10 8 29 29 H 1.08998 * 109.47142 * 300.00129 * 1 2 3 30 30 H 1.09004 * 109.46616 * 60.00505 * 1 2 3 31 31 H 1.08998 * 109.46759 * 179.97438 * 1 2 3 32 32 H 1.08996 * 117.49986 * 359.97438 * 7 5 3 33 33 H 1.09005 * 117.49868 * 214.97219 * 7 5 3 34 34 H 1.09006 * 109.59202 * 112.54509 * 13 12 10 35 35 H 1.08992 * 109.72385 * 352.16444 * 13 12 10 36 36 H 1.09004 * 109.48981 * 185.84172 * 14 13 12 37 37 H 1.09001 * 109.48890 * 65.76707 * 14 13 12 38 38 H 1.08996 * 113.49221 * 333.53600 * 17 16 15 39 39 H 1.09002 * 113.54146 * 203.02810 * 17 16 15 40 40 H 0.97007 * 119.99792 * 179.97438 * 22 21 19 41 41 H 1.08992 * 113.49762 * 87.84003 * 27 18 17 42 42 H 1.08999 * 113.48879 * 218.35214 * 27 18 17 43 43 H 1.09004 * 109.74850 * 12.09532 * 28 12 10 44 44 H 1.08998 * 109.74984 * 251.36981 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 4.0634 0.7786 -0.8328 7 6 4.2069 2.5531 0.5453 8 6 4.2740 1.2579 1.3569 9 1 5.2367 0.7499 1.4160 10 6 3.4129 1.1640 2.5901 11 8 2.8284 2.1454 2.9976 12 7 3.2924 -0.0106 3.2399 13 6 3.9914 -1.2154 2.7663 14 6 2.9730 -2.3517 2.6260 15 8 2.2730 -2.5166 3.8634 16 6 1.5622 -1.3576 4.2853 17 6 0.2739 -1.0909 3.5055 18 7 -0.4249 -1.9498 4.4750 19 6 -1.5465 -2.7353 4.4659 20 1 -2.1028 -2.8718 3.5503 21 6 -1.9686 -3.3561 5.6335 22 7 -1.3684 -3.0901 6.7743 23 14 -3.3885 -4.5690 5.5858 24 1 -2.8560 -5.9496 5.4607 25 1 -4.1792 -4.4549 6.8375 26 1 -4.2588 -4.2666 4.4212 27 6 0.6070 -1.5891 5.4605 28 6 2.4562 -0.1289 4.4475 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.5399 3.3374 0.9030 33 1 5.1256 2.8976 0.0703 34 1 4.7591 -1.4993 3.4862 35 1 4.4528 -1.0166 1.7991 36 1 3.4925 -3.2768 2.3760 37 1 2.2627 -2.1080 1.8359 38 1 0.2859 -1.4976 2.4943 39 1 -0.0468 -0.0496 3.5374 40 1 -1.6636 -3.5237 7.5903 41 1 0.3767 -0.6816 6.0185 42 1 0.9010 -2.4178 6.1047 43 1 1.8396 0.7632 4.5575 44 1 3.0915 -0.2488 5.3251 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053188324.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:56 Heat of formation + Delta-G solvation = -79.168188 kcal Electronic energy + Delta-G solvation = -29726.767041 eV Core-core repulsion = 25647.387795 eV Total energy + Delta-G solvation = -4079.379246 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.17666 -41.48115 -40.35317 -38.06079 -37.79151 -36.96212 -35.79413 -34.32634 -31.63089 -29.51338 -29.28428 -28.32174 -26.76962 -25.82041 -24.94632 -24.54938 -23.22821 -21.66458 -20.70883 -19.99803 -19.16495 -18.84357 -18.23312 -17.77650 -17.57683 -17.43078 -17.05232 -16.41669 -16.36702 -16.10642 -15.80409 -15.47544 -15.17631 -15.03908 -14.96280 -14.41870 -14.24544 -14.08805 -13.96387 -13.44002 -13.24985 -13.12935 -12.98657 -12.81130 -12.78277 -12.53009 -12.10916 -11.97745 -11.93771 -11.91307 -11.73354 -11.66517 -11.54290 -11.47609 -11.00598 -10.86692 -10.73301 -9.59557 -9.00809 -7.96104 -5.28959 0.92983 1.34622 1.43562 1.46741 1.53475 1.55125 1.77715 2.43375 2.64945 2.66607 3.25785 3.27508 3.30752 3.45782 3.53616 3.60588 3.76540 3.83282 4.02132 4.12400 4.13863 4.16278 4.25898 4.32565 4.42724 4.48222 4.58489 4.59570 4.66277 4.67809 4.70434 4.83992 4.88594 4.99075 5.07963 5.09101 5.10475 5.28251 5.29721 5.39193 5.82814 6.27056 6.38033 6.59618 6.83924 7.00835 7.53341 8.51729 9.23038 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.017962 B = 0.004124 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.472735 B = 6788.695563 C = 7465.405075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.351 6.351 3 C 0.471 3.529 4 O -0.535 6.535 5 C -0.135 4.135 6 H 0.202 0.798 7 C -0.111 4.111 8 C -0.158 4.158 9 H 0.195 0.805 10 C 0.523 3.477 11 O -0.582 6.582 12 N -0.603 5.603 13 C 0.075 3.925 14 C 0.035 3.965 15 O -0.360 6.360 16 C 0.082 3.918 17 C 0.109 3.891 18 N -0.626 5.626 19 C -0.233 4.233 20 H 0.085 0.915 21 C -0.063 4.063 22 N -0.953 5.953 23 Si 0.984 3.016 24 H -0.284 1.284 25 H -0.293 1.293 26 H -0.267 1.267 27 C 0.174 3.826 28 C 0.111 3.889 29 H 0.037 0.963 30 H 0.074 0.926 31 H 0.120 0.880 32 H 0.079 0.921 33 H 0.169 0.831 34 H 0.099 0.901 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.024 0.976 40 H 0.251 0.749 41 H 0.034 0.966 42 H 0.043 0.957 43 H 0.077 0.923 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.806 4.691 -16.740 25.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.266 6.266 3 C 0.315 3.685 4 O -0.424 6.424 5 C -0.153 4.153 6 H 0.219 0.781 7 C -0.148 4.148 8 C -0.179 4.179 9 H 0.212 0.788 10 C 0.313 3.687 11 O -0.462 6.462 12 N -0.335 5.335 13 C -0.046 4.046 14 C -0.042 4.042 15 O -0.278 6.278 16 C 0.040 3.960 17 C -0.017 4.017 18 N -0.352 5.352 19 C -0.361 4.361 20 H 0.102 0.898 21 C -0.256 4.256 22 N -0.601 5.601 23 Si 0.811 3.189 24 H -0.210 1.210 25 H -0.219 1.219 26 H -0.191 1.191 27 C 0.048 3.952 28 C -0.014 4.014 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.139 0.861 32 H 0.097 0.903 33 H 0.187 0.813 34 H 0.117 0.883 35 H 0.156 0.844 36 H 0.153 0.847 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.042 0.958 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.061 0.939 43 H 0.095 0.905 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 17.991 5.088 -16.303 24.806 hybrid contribution -1.881 -0.129 0.648 1.993 sum 16.110 4.959 -15.655 23.004 Atomic orbital electron populations 1.23379 0.75701 1.04959 1.01820 1.86471 1.23892 1.32797 1.83472 1.23571 0.92365 0.81118 0.71400 1.90681 1.67983 1.37766 1.46004 1.22146 0.85596 1.07553 1.00025 0.78075 1.23308 1.03607 0.89587 0.98314 1.22571 1.01850 1.06615 0.86834 0.78780 1.20510 0.81251 0.81912 0.85044 1.90733 1.49047 1.37675 1.68702 1.48210 1.47619 1.10319 1.27374 1.22749 0.94932 0.83070 1.03838 1.23302 0.94287 1.00871 0.85736 1.87955 1.65701 1.33898 1.40294 1.22730 0.89598 0.86039 0.97672 1.22864 0.90995 0.93081 0.94791 1.45814 1.28126 1.50401 1.10839 1.19297 1.01355 1.20043 0.95391 0.89750 1.25678 1.02457 1.02807 0.94643 1.70020 1.45145 1.46525 0.98373 0.84997 0.78260 0.78597 0.77059 1.21026 1.21947 1.19114 1.21899 0.84611 0.97169 0.91538 1.21848 0.93887 0.97218 0.88406 0.94408 0.90714 0.86136 0.90272 0.81334 0.88259 0.84428 0.84683 0.93306 0.93131 0.95813 0.94035 0.94811 0.93859 0.90470 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 10.56 113.37 1.20 2.10 16 2 O -0.35 -8.93 10.57 -51.47 -0.54 -9.48 16 3 C 0.47 12.25 6.67 71.24 0.48 12.73 16 4 O -0.54 -18.45 16.27 21.97 0.36 -18.10 16 5 C -0.13 -1.90 6.29 -11.54 -0.07 -1.97 16 6 H 0.20 0.76 8.14 -2.39 -0.02 0.74 16 7 C -0.11 -1.57 9.55 30.59 0.29 -1.27 16 8 C -0.16 -2.24 4.68 -11.54 -0.05 -2.29 16 9 H 0.20 0.68 7.34 -2.38 -0.02 0.66 16 10 C 0.52 14.01 6.50 87.66 0.57 14.57 16 11 O -0.58 -21.82 15.80 -3.04 -0.05 -21.87 16 12 N -0.60 -15.50 3.03 -817.96 -2.48 -17.97 16 13 C 0.08 1.26 6.46 86.34 0.56 1.82 16 14 C 0.03 0.81 6.90 72.06 0.50 1.31 16 15 O -0.36 -13.24 10.55 -148.98 -1.57 -14.82 16 16 C 0.08 3.24 1.29 -10.81 -0.01 3.23 16 17 C 0.11 4.84 7.90 83.34 0.66 5.50 16 18 N -0.63 -34.16 3.77 -738.65 -2.79 -36.94 16 19 C -0.23 -13.63 10.73 84.03 0.90 -12.72 16 20 H 0.08 4.70 7.84 -2.91 -0.02 4.68 16 21 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 22 N -0.95 -59.14 11.74 21.65 0.25 -58.89 16 23 Si 0.98 46.67 29.56 68.60 2.03 48.70 16 24 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 25 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 27 C 0.17 8.80 6.69 83.42 0.56 9.36 16 28 C 0.11 3.68 5.83 86.15 0.50 4.18 16 29 H 0.04 1.18 8.13 -2.39 -0.02 1.16 16 30 H 0.07 1.69 8.13 -2.39 -0.02 1.68 16 31 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.08 1.87 7.43 -2.39 -0.02 1.85 16 33 H 0.17 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.14 1.05 5.98 -2.39 -0.01 1.04 16 36 H 0.14 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.05 1.26 7.30 -2.39 -0.02 1.24 16 38 H 0.05 2.13 7.36 -2.39 -0.02 2.12 16 39 H 0.02 1.13 7.93 -2.39 -0.02 1.11 16 40 H 0.25 15.02 8.31 -92.70 -0.77 14.25 16 41 H 0.03 1.75 8.09 -2.39 -0.02 1.73 16 42 H 0.04 2.43 7.50 -2.39 -0.02 2.41 16 43 H 0.08 2.95 6.90 -2.38 -0.02 2.93 16 44 H 0.09 2.75 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -88.42 365.26 2.76 -85.66 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 1.01 Total: 10.39 kcal Atomic # 6 Polarization: 26.78 SS G_CDS: 6.54 Total: 33.32 kcal Atomic # 7 Polarization: -108.80 SS G_CDS: -5.01 Total: -113.81 kcal Atomic # 8 Polarization: -62.45 SS G_CDS: -1.81 Total: -64.25 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -88.42 2.76 -85.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053188324.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.492 kcal (2) G-P(sol) polarization free energy of solvation -88.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds