Wall clock time and date at job start Tue Mar 31 2020 05:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48504 * 109.47118 * 269.99750 * 3 2 1 5 5 H 1.48499 * 109.47293 * 29.99754 * 3 2 1 6 6 H 1.48504 * 109.47104 * 150.00000 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.47209 * 135.97165 * 359.63602 * 9 7 2 11 11 C 1.52977 * 87.68988 * 153.61154 * 10 9 7 12 12 C 1.47211 * 135.97289 * 179.97438 * 9 7 2 13 13 C 1.53666 * 115.11855 * 140.89450 * 11 10 9 14 14 C 1.55492 * 101.96562 * 111.47258 * 13 11 10 15 15 C 1.55017 * 101.04465 * 33.49372 * 14 13 11 16 16 H 1.08992 * 110.30327 * 82.89629 * 15 14 13 17 17 C 1.52996 * 110.29990 * 205.04736 * 15 14 13 18 18 N 1.46497 * 109.47253 * 182.21059 * 17 15 14 19 19 C 1.34777 * 120.00270 * 179.97438 * 18 17 15 20 20 O 1.21283 * 119.99819 * 0.02562 * 19 18 17 21 21 C 1.50698 * 120.00042 * 179.97438 * 19 18 17 22 22 H 1.08997 * 110.49304 * 319.30041 * 21 19 18 23 23 C 1.54107 * 110.54698 * 82.00509 * 21 19 18 24 24 N 1.47391 * 103.69946 * 118.55661 * 23 21 19 25 25 C 1.33944 * 109.21528 * 0.11585 * 24 23 21 26 26 O 1.21585 * 123.04341 * 179.90282 * 25 24 23 27 27 N 1.33947 * 113.91422 * 359.91950 * 25 24 23 28 28 O 1.42398 * 116.32163 * 269.46993 * 11 10 9 29 29 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 30 30 H 1.09000 * 113.49018 * 268.28917 * 10 9 7 31 31 H 1.08990 * 113.50011 * 38.82750 * 10 9 7 32 32 H 1.08998 * 113.49975 * 321.17539 * 12 9 7 33 33 H 1.09001 * 113.49414 * 91.64273 * 12 9 7 34 34 H 1.09000 * 110.93309 * 229.64364 * 13 11 10 35 35 H 1.09000 * 110.92721 * 353.30819 * 13 11 10 36 36 H 1.08999 * 111.10828 * 275.54594 * 14 13 11 37 37 H 1.08999 * 111.13989 * 151.45018 * 14 13 11 38 38 H 1.09008 * 109.46800 * 302.20940 * 17 15 14 39 39 H 1.09004 * 109.47503 * 62.20642 * 17 15 14 40 40 H 0.97004 * 120.00204 * 359.97438 * 18 17 15 41 41 H 1.09001 * 110.54722 * 237.18596 * 23 21 19 42 42 H 1.08996 * 110.54865 * 0.02562 * 23 21 19 43 43 H 0.97004 * 125.37545 * 180.02562 * 24 23 21 44 44 H 0.97004 * 125.41188 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0897 -2.7931 0.0066 11 6 0.3428 -4.0905 -0.6788 12 6 1.6823 -3.8163 0.0005 13 6 -0.3879 -5.3553 -0.2017 14 6 -1.2315 -5.7315 -1.4526 15 6 -0.2889 -5.2738 -2.5950 16 1 0.4556 -6.0424 -2.8018 17 6 -1.0964 -4.9622 -3.8566 18 7 -0.1847 -4.5828 -4.9387 19 6 -0.6754 -4.2635 -6.1527 20 8 -1.8720 -4.2899 -6.3491 21 6 0.2625 -3.8727 -7.2656 22 1 1.0585 -3.2318 -6.8864 23 6 0.8524 -5.1260 -7.9410 24 7 0.3834 -5.0249 -9.3346 25 6 -0.3513 -3.9135 -9.4730 26 8 -0.8621 -3.5833 -10.5258 27 7 -0.4719 -3.1986 -8.3467 28 8 0.3482 -4.0810 -2.1028 29 1 -0.4850 0.8401 -0.0004 30 1 -0.4941 -2.9443 1.0074 31 1 -0.7250 -2.1623 -0.6150 32 1 2.5432 -4.0492 -0.6261 33 1 1.7598 -4.2448 0.9998 34 1 0.3213 -6.1463 0.0420 35 1 -1.0315 -5.1352 0.6501 36 1 -2.1707 -5.1788 -1.4734 37 1 -1.4100 -6.8058 -1.4978 38 1 -1.6637 -5.8449 -4.1521 39 1 -1.7830 -4.1399 -3.6548 40 1 0.7723 -4.5614 -4.7815 41 1 1.9414 -5.1062 -7.8994 42 1 0.4666 -6.0309 -7.4716 43 1 0.5774 -5.6619 -10.0400 44 1 -0.9650 -2.3680 -8.2583 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053656843.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:41 Heat of formation + Delta-G solvation = -60.319826 kcal Electronic energy + Delta-G solvation = -27764.484227 eV Core-core repulsion = 23718.215059 eV Total energy + Delta-G solvation = -4046.269168 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.34839 -41.33813 -40.27145 -38.12349 -37.36425 -35.69756 -34.13055 -34.01539 -33.05367 -31.33593 -29.97962 -28.46527 -26.47076 -25.73063 -24.50983 -23.04414 -22.83378 -22.46110 -21.49208 -20.52561 -19.16918 -18.72749 -18.60769 -17.70057 -17.41379 -16.96510 -16.92327 -16.67531 -16.15011 -16.07826 -15.56743 -15.32131 -15.21776 -15.08081 -14.93810 -14.73830 -14.27806 -14.03887 -13.93347 -13.63411 -13.24978 -13.14095 -13.03055 -12.80912 -12.60008 -12.46202 -12.29387 -12.14533 -11.62079 -11.61473 -11.37422 -11.28981 -11.24322 -10.91635 -10.58637 -10.15899 -10.12635 -9.85943 -8.90210 -7.89061 -5.21362 1.35959 1.44347 1.46745 1.55142 1.71459 1.92292 2.19873 2.47654 2.74317 3.03270 3.30153 3.33312 3.45496 3.58696 3.70344 3.76710 3.86714 3.98278 4.04626 4.22803 4.34701 4.49890 4.56580 4.63073 4.67697 4.70154 4.80060 4.88934 4.95629 5.01708 5.05041 5.15971 5.21485 5.34012 5.34877 5.40068 5.53593 5.85838 5.94773 6.18040 6.25637 6.42502 6.49569 6.91521 7.13813 7.48844 7.62225 8.63133 9.28560 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.011885 B = 0.003155 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.295563 B = 8871.586364 C =10509.550039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.070 4.070 3 Si 0.978 3.022 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.224 4.224 8 H 0.085 0.915 9 N -0.639 5.639 10 C 0.144 3.856 11 C 0.082 3.918 12 C 0.112 3.888 13 C -0.128 4.128 14 C -0.139 4.139 15 C 0.063 3.937 16 H 0.110 0.890 17 C 0.125 3.875 18 N -0.703 5.703 19 C 0.500 3.500 20 O -0.577 6.577 21 C 0.101 3.899 22 H 0.150 0.850 23 C 0.109 3.891 24 N -0.728 5.728 25 C 0.696 3.304 26 O -0.640 6.640 27 N -0.718 5.718 28 O -0.363 6.363 29 H 0.245 0.755 30 H 0.029 0.971 31 H 0.028 0.972 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.121 0.879 38 H 0.098 0.902 39 H 0.042 0.958 40 H 0.419 0.581 41 H 0.142 0.858 42 H 0.101 0.899 43 H 0.441 0.559 44 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.344 -19.524 -8.829 21.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.806 3.194 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.190 1.190 7 C -0.352 4.352 8 H 0.103 0.897 9 N -0.365 5.365 10 C 0.018 3.982 11 C 0.041 3.959 12 C -0.013 4.013 13 C -0.166 4.166 14 C -0.177 4.177 15 C 0.006 3.994 16 H 0.128 0.872 17 C 0.001 3.999 18 N -0.355 5.355 19 C 0.285 3.715 20 O -0.456 6.456 21 C -0.008 4.008 22 H 0.167 0.833 23 C -0.015 4.015 24 N -0.391 5.391 25 C 0.394 3.606 26 O -0.522 6.522 27 N -0.379 5.379 28 O -0.282 6.282 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.125 0.875 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.139 0.861 38 H 0.116 0.884 39 H 0.060 0.940 40 H 0.257 0.743 41 H 0.160 0.840 42 H 0.119 0.881 43 H 0.285 0.715 44 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 3.429 -18.891 -9.571 21.453 hybrid contribution 0.054 1.704 0.377 1.745 sum 3.482 -17.187 -9.194 19.801 Atomic orbital electron populations 1.70040 1.06572 1.25322 1.58473 1.25628 0.96503 1.00884 1.03294 0.85086 0.77732 0.79082 0.77498 1.21339 1.22320 1.18996 1.19316 0.90660 0.82920 1.42285 0.89690 1.45849 1.03823 1.00770 1.86037 1.22442 0.87954 0.92033 0.95773 1.22967 0.96384 0.95083 0.81430 1.22893 0.96572 0.83941 0.97900 1.22882 0.99227 0.95591 0.98941 1.23246 0.98014 1.04054 0.92370 1.23550 0.95013 0.87719 0.93115 0.87209 1.21539 0.92239 1.00755 0.85327 1.45810 1.11930 1.68102 1.09664 1.21225 0.89229 0.76759 0.84288 1.90743 1.17926 1.53783 1.83134 1.22168 0.93906 0.97291 0.87473 0.83299 1.22654 1.02877 0.95947 0.80008 1.45092 1.55291 1.25093 1.13643 1.16157 0.79367 0.81541 0.83527 1.90950 1.56346 1.74776 1.30147 1.44931 1.57143 1.27254 1.08540 1.88388 1.78926 1.42208 1.18672 0.94589 0.95317 0.95329 0.92935 0.91914 0.87488 0.89741 0.91247 0.86065 0.88379 0.93962 0.74330 0.84011 0.88062 0.71467 0.72669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.18 11.51 21.65 0.25 -58.93 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 3 Si 0.98 46.23 29.55 68.60 2.03 48.26 16 4 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.22 -12.66 10.74 84.03 0.90 -11.76 16 8 H 0.09 4.56 7.83 -2.91 -0.02 4.53 16 9 N -0.64 -32.80 3.78 -739.13 -2.80 -35.60 16 10 C 0.14 6.80 6.89 83.48 0.57 7.38 16 11 C 0.08 2.79 1.75 -10.68 -0.02 2.77 16 12 C 0.11 4.21 8.20 83.38 0.68 4.90 16 13 C -0.13 -2.79 6.39 31.68 0.20 -2.58 16 14 C -0.14 -2.43 6.58 32.14 0.21 -2.22 16 15 C 0.06 1.26 3.49 31.28 0.11 1.36 16 16 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 17 C 0.13 2.63 5.38 86.38 0.46 3.10 16 18 N -0.70 -12.76 5.54 -463.06 -2.56 -15.33 16 19 C 0.50 10.69 6.94 87.66 0.61 11.29 16 20 O -0.58 -18.20 16.58 -3.04 -0.05 -18.25 16 21 C 0.10 1.48 4.16 44.51 0.19 1.66 16 22 H 0.15 1.35 8.14 -2.39 -0.02 1.33 16 23 C 0.11 0.87 7.72 86.58 0.67 1.54 16 24 N -0.73 -10.72 6.39 -476.60 -3.04 -13.76 16 25 C 0.70 17.45 8.92 179.57 1.60 19.05 16 26 O -0.64 -22.44 18.05 -3.98 -0.07 -22.52 16 27 N -0.72 -15.64 5.62 -460.34 -2.59 -18.23 16 28 O -0.36 -11.80 10.84 -148.98 -1.62 -13.42 16 29 H 0.25 14.84 8.31 -92.70 -0.77 14.07 16 30 H 0.03 1.36 7.95 -2.39 -0.02 1.34 16 31 H 0.03 1.59 7.14 -2.39 -0.02 1.58 16 32 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.06 2.12 8.13 -2.39 -0.02 2.10 16 34 H 0.11 1.72 8.13 -2.39 -0.02 1.70 16 35 H 0.08 1.87 7.81 -2.39 -0.02 1.85 16 36 H 0.07 1.41 8.05 -2.39 -0.02 1.40 16 37 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.10 1.70 8.14 -2.38 -0.02 1.69 16 39 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.42 5.57 8.47 -92.71 -0.79 4.79 16 41 H 0.14 0.02 8.14 -2.39 -0.02 0.00 16 42 H 0.10 0.60 7.72 -2.39 -0.02 0.58 16 43 H 0.44 4.66 8.96 -92.71 -0.83 3.83 16 44 H 0.43 9.78 8.96 -92.71 -0.83 8.94 16 Total: -1.00 -91.37 366.29 -5.18 -96.55 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -1.39 Total: 18.34 kcal Atomic # 6 Polarization: 26.21 SS G_CDS: 6.66 Total: 32.87 kcal Atomic # 7 Polarization: -131.10 SS G_CDS: -10.74 Total: -141.84 kcal Atomic # 8 Polarization: -52.45 SS G_CDS: -1.74 Total: -54.18 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -91.37 -5.18 -96.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053656843.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.230 kcal (2) G-P(sol) polarization free energy of solvation -91.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds