Wall clock time and date at job start Tue Mar 31 2020 06:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33227 * 126.02072 * 2 1 4 4 C 1.31534 * 109.75678 * 179.97438 * 3 2 1 5 5 O 1.35207 * 125.48786 * 180.02562 * 4 3 2 6 6 N 1.34943 * 109.02025 * 359.73125 * 4 3 2 7 7 H 0.96997 * 126.54500 * 180.26437 * 6 4 3 8 8 C 1.36722 * 126.01371 * 180.02562 * 2 1 3 9 9 C 1.46373 * 126.82695 * 359.97438 * 8 2 1 10 10 O 1.21732 * 120.00096 * 0.02562 * 9 8 2 11 11 N 1.34782 * 120.00023 * 180.02562 * 9 8 2 12 12 C 1.46500 * 120.00136 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47218 * 179.97438 * 12 11 9 14 14 H 1.09008 * 108.56730 * 62.05806 * 13 12 11 15 15 C 1.46915 * 108.62205 * 179.97438 * 13 12 11 16 16 N 1.50117 * 106.78054 * 177.92060 * 15 13 12 17 17 C 1.36929 * 120.63589 * 111.34761 * 16 15 13 18 18 H 1.07996 * 120.00100 * 155.99961 * 17 16 15 19 19 C 1.38814 * 120.00125 * 336.00075 * 17 16 15 20 20 N 1.31622 * 119.99699 * 340.27292 * 19 17 16 21 21 Si 1.86800 * 120.00267 * 160.26825 * 19 17 16 22 22 H 1.48499 * 109.47322 * 180.02562 * 21 19 17 23 23 H 1.48507 * 109.46880 * 300.00326 * 21 19 17 24 24 H 1.48507 * 109.46875 * 59.99950 * 21 19 17 25 25 C 1.43427 * 118.72708 * 291.62358 * 16 15 13 26 26 C 1.54787 * 116.57743 * 89.21991 * 25 16 15 27 27 C 1.55188 * 108.80074 * 319.48687 * 26 25 16 28 28 O 1.39642 * 110.57162 * 322.08099 * 27 26 25 29 29 H 1.08999 * 109.47059 * 270.00120 * 1 2 3 30 30 H 1.09005 * 109.46468 * 29.99635 * 1 2 3 31 31 H 1.08992 * 109.47433 * 149.99216 * 1 2 3 32 32 H 0.96706 * 113.99859 * 89.98065 * 5 4 3 33 33 H 0.96998 * 119.99895 * 359.97438 * 11 9 8 34 34 H 1.09000 * 109.47057 * 59.99452 * 12 11 9 35 35 H 1.08998 * 109.46914 * 299.99895 * 12 11 9 36 36 H 1.09005 * 109.98585 * 58.60629 * 15 13 12 37 37 H 1.09001 * 109.99701 * 297.24046 * 15 13 12 38 38 H 0.97005 * 119.99480 * 180.02562 * 20 19 17 39 39 H 1.09002 * 108.12268 * 210.83881 * 25 16 15 40 40 H 1.09000 * 108.12645 * 327.32207 * 25 16 15 41 41 H 1.09006 * 109.66283 * 199.66133 * 26 25 16 42 42 H 1.08998 * 109.54928 * 79.25119 * 26 25 16 43 43 H 1.09004 * 109.26188 * 201.79339 * 27 26 25 44 44 H 1.09000 * 109.25505 * 82.35679 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2905 1.0775 0.0000 4 6 3.5532 0.7092 0.0006 5 8 4.6150 1.5462 0.0012 6 7 3.6181 -0.6387 0.0069 7 1 4.4242 -1.1781 0.0123 8 6 2.3109 -1.1059 -0.0005 9 6 1.8791 -2.5045 -0.0006 10 8 0.6922 -2.7750 -0.0007 11 7 2.7955 -3.4928 -0.0006 12 6 2.3634 -4.8926 -0.0013 13 6 3.5911 -5.8054 -0.0017 14 1 4.1586 -5.6244 0.9112 15 6 3.1369 -7.2026 -0.0018 16 7 4.3689 -8.0588 -0.0544 17 6 4.7351 -8.8215 1.0222 18 1 5.3522 -9.6962 0.8795 19 6 4.3131 -8.4704 2.2972 20 7 3.9091 -7.2418 2.5416 21 14 4.3186 -9.7415 3.6661 22 1 3.8257 -9.1195 4.9212 23 1 3.4324 -10.8735 3.2939 24 1 5.7016 -10.2422 3.8710 25 6 5.1583 -8.0581 -1.2519 26 6 6.2792 -6.9944 -1.3418 27 6 5.7464 -5.6563 -0.7638 28 8 4.4087 -5.4672 -1.1172 29 1 -0.3633 0.0000 1.0277 30 1 -0.3632 0.8901 -0.5138 31 1 -0.3634 -0.8898 -0.5139 32 1 4.9233 1.7898 0.8849 33 1 3.7413 -3.2772 -0.0009 34 1 1.7655 -5.0878 -0.8915 35 1 1.7649 -5.0884 0.8884 36 1 2.5140 -7.3918 -0.8761 37 1 2.5761 -7.4123 0.9090 38 1 3.6146 -6.9963 3.4327 39 1 5.6206 -9.0399 -1.3539 40 1 4.4882 -7.9152 -2.0997 41 1 6.5679 -6.8529 -2.3834 42 1 7.1421 -7.3241 -0.7634 43 1 6.3420 -4.8323 -1.1569 44 1 5.8320 -5.6746 0.3226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073649585.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:22 Heat of formation + Delta-G solvation = -53.584648 kcal Electronic energy + Delta-G solvation = -28429.859950 eV Core-core repulsion = 24383.882841 eV Total energy + Delta-G solvation = -4045.977109 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.36821 -40.99243 -40.07488 -38.39145 -36.82742 -36.12959 -34.48628 -33.79099 -32.95922 -31.81442 -30.36381 -28.45041 -27.08503 -26.84317 -24.56691 -23.70443 -22.49883 -22.24050 -21.32093 -21.06266 -20.39283 -19.00187 -18.84868 -17.75218 -17.45756 -17.20767 -16.75298 -16.57555 -16.24466 -15.97703 -15.82126 -15.53624 -15.08579 -14.77056 -14.71773 -14.23772 -14.19415 -13.89034 -13.62277 -13.58333 -13.34747 -13.28885 -13.03473 -12.95425 -12.61310 -12.53093 -12.31624 -11.93795 -11.80188 -11.53327 -11.39034 -11.22019 -11.19812 -11.04301 -10.56504 -10.31252 -10.23103 -9.48737 -8.73274 -7.90882 -5.30664 0.04777 1.30309 1.47930 1.52444 1.56349 1.56824 2.04846 2.16615 2.51873 2.79971 3.08453 3.26679 3.49095 3.67700 3.87287 4.05334 4.14611 4.25205 4.36334 4.39782 4.44247 4.54783 4.73690 4.76633 4.78027 4.84216 4.90404 4.94133 5.00062 5.06089 5.16662 5.17909 5.30159 5.33847 5.40367 5.46644 5.49132 5.67659 5.76581 6.33152 6.36966 6.48648 6.64055 6.67593 7.04092 7.10547 7.82588 8.35048 9.14890 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.015909 B = 0.003250 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.638559 B = 8614.188131 C = 9124.860659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.103 3.897 3 N -0.517 5.517 4 C 0.426 3.574 5 O -0.440 6.440 6 N -0.541 5.541 7 H 0.436 0.564 8 C -0.092 4.092 9 C 0.593 3.407 10 O -0.556 6.556 11 N -0.703 5.703 12 C 0.134 3.866 13 C 0.079 3.921 14 H 0.085 0.915 15 C 0.144 3.856 16 N -0.601 5.601 17 C -0.266 4.266 18 H 0.062 0.938 19 C -0.033 4.033 20 N -0.916 5.916 21 Si 0.957 3.043 22 H -0.294 1.294 23 H -0.286 1.286 24 H -0.282 1.282 25 C 0.154 3.846 26 C -0.165 4.165 27 C 0.067 3.933 28 O -0.367 6.367 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.432 0.568 33 H 0.404 0.596 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.025 0.975 37 H 0.080 0.920 38 H 0.252 0.748 39 H 0.029 0.971 40 H 0.034 0.966 41 H 0.078 0.922 42 H 0.053 0.947 43 H 0.088 0.912 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.351 13.967 -3.910 14.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.032 4.032 3 N -0.249 5.249 4 C 0.124 3.876 5 O -0.245 6.245 6 N -0.161 5.161 7 H 0.278 0.722 8 C -0.207 4.207 9 C 0.381 3.619 10 O -0.435 6.435 11 N -0.353 5.353 12 C 0.009 3.991 13 C 0.020 3.980 14 H 0.103 0.897 15 C 0.019 3.981 16 N -0.323 5.323 17 C -0.396 4.396 18 H 0.080 0.920 19 C -0.229 4.229 20 N -0.562 5.562 21 Si 0.786 3.214 22 H -0.220 1.220 23 H -0.213 1.213 24 H -0.208 1.208 25 C 0.026 3.974 26 C -0.206 4.206 27 C -0.011 4.011 28 O -0.286 6.286 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.295 0.705 33 H 0.239 0.761 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.043 0.957 37 H 0.098 0.902 38 H 0.061 0.939 39 H 0.047 0.953 40 H 0.053 0.947 41 H 0.096 0.904 42 H 0.072 0.928 43 H 0.106 0.894 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.176 14.670 -4.529 15.398 hybrid contribution 1.612 -1.824 1.618 2.923 sum 2.788 12.846 -2.912 13.463 Atomic orbital electron populations 1.20343 0.85306 1.03916 1.03783 1.21228 0.97656 0.86031 0.98292 1.70282 0.99588 1.30603 1.24382 1.20228 0.87577 0.79050 1.00777 1.84813 1.42112 1.60782 1.36778 1.43578 1.08522 1.07890 1.56074 0.72210 1.20561 0.84092 0.94327 1.21766 1.16844 0.85634 0.82998 0.76449 1.90812 1.17008 1.83398 1.52302 1.45636 1.09653 1.05927 1.74106 1.21462 0.96698 0.79199 1.01707 1.21771 0.92090 0.94750 0.89356 0.89745 1.20682 0.88729 0.89257 0.99424 1.44229 1.23333 1.51603 1.13090 1.19364 1.30289 1.03900 0.86008 0.92031 1.25417 1.01892 0.97145 0.98470 1.69973 1.48738 1.16465 1.20977 0.85515 0.77679 0.79275 0.78909 1.21967 1.21298 1.20766 1.20375 0.92451 0.96146 0.88466 1.23407 0.99281 0.97126 1.00796 1.22422 0.83192 0.96843 0.98627 1.87516 1.16951 1.86367 1.37739 0.89755 0.89642 0.90066 0.70508 0.76066 0.91757 0.91253 0.95655 0.90195 0.93911 0.95298 0.94744 0.90362 0.92792 0.89403 0.94370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.77 9.87 71.24 0.70 -1.07 16 2 C 0.10 2.72 7.14 41.99 0.30 3.02 16 3 N -0.52 -13.19 11.22 -301.66 -3.39 -16.57 16 4 C 0.43 8.59 9.43 179.99 1.70 10.29 16 5 O -0.44 -5.93 13.62 -84.88 -1.16 -7.09 16 6 N -0.54 -10.34 6.12 -300.14 -1.84 -12.18 16 7 H 0.44 5.83 8.32 -92.71 -0.77 5.06 16 8 C -0.09 -2.39 7.08 39.80 0.28 -2.11 16 9 C 0.59 18.09 7.78 86.36 0.67 18.76 16 10 O -0.56 -20.10 14.80 -4.45 -0.07 -20.17 16 11 N -0.70 -20.47 5.39 -467.36 -2.52 -22.99 16 12 C 0.13 4.62 5.26 86.38 0.45 5.08 16 13 C 0.08 3.02 2.01 28.71 0.06 3.07 16 14 H 0.08 3.66 5.25 -2.38 -0.01 3.65 16 15 C 0.14 6.30 4.71 83.78 0.39 6.69 16 16 N -0.60 -27.92 2.62 -707.11 -1.86 -29.77 16 17 C -0.27 -13.56 9.62 84.04 0.81 -12.75 16 18 H 0.06 3.16 7.88 -2.91 -0.02 3.14 16 19 C -0.03 -1.65 4.91 84.86 0.42 -1.24 16 20 N -0.92 -46.70 9.58 21.65 0.21 -46.49 16 21 Si 0.96 42.07 29.60 68.60 2.03 44.10 16 22 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 23 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 25 C 0.15 6.13 5.28 87.56 0.46 6.59 16 26 C -0.17 -5.53 6.74 31.95 0.22 -5.32 16 27 C 0.07 2.19 6.38 72.73 0.46 2.65 16 28 O -0.37 -12.83 9.34 -137.21 -1.28 -14.11 16 29 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.08 2.10 6.46 -2.39 -0.02 2.09 16 32 H 0.43 1.02 9.06 -74.05 -0.67 0.35 16 33 H 0.40 10.00 7.43 -92.71 -0.69 9.31 16 34 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.08 3.91 6.01 -2.39 -0.01 3.90 16 38 H 0.25 12.72 8.31 -92.70 -0.77 11.95 16 39 H 0.03 1.15 7.96 -2.39 -0.02 1.13 16 40 H 0.03 1.33 7.99 -2.39 -0.02 1.31 16 41 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 42 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 44 H 0.04 1.46 6.66 -2.39 -0.02 1.44 16 Total: -1.00 -64.39 356.30 -3.99 -68.39 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: -1.06 Total: 23.21 kcal Atomic # 6 Polarization: 26.74 SS G_CDS: 6.93 Total: 33.67 kcal Atomic # 7 Polarization: -118.61 SS G_CDS: -9.39 Total: -128.00 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -2.50 Total: -41.37 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -64.39 -3.99 -68.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073649585.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.802 kcal (2) G-P(sol) polarization free energy of solvation -64.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds