Wall clock time and date at job start Tue Mar 31 2020 05:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99626 * 2 1 4 4 H 1.48496 * 109.47306 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47341 * 300.00459 * 3 2 1 6 6 H 1.48505 * 109.46832 * 60.00214 * 3 2 1 7 7 C 1.38802 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00397 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00349 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00263 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47092 * 35.00025 * 10 9 7 12 12 C 1.52997 * 109.47007 * 275.00076 * 10 9 7 13 13 C 1.53002 * 109.46817 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47233 * 60.00194 * 13 12 10 15 15 C 1.52997 * 109.47060 * 299.99657 * 14 13 12 16 16 C 1.52999 * 109.47317 * 59.99960 * 15 14 13 17 17 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 18 18 N 1.46496 * 109.47487 * 179.97438 * 16 15 14 19 19 C 1.34778 * 120.00072 * 275.00191 * 18 16 15 20 20 O 1.21273 * 120.00144 * 359.97438 * 19 18 16 21 21 C 1.50703 * 119.99935 * 179.97438 * 19 18 16 22 22 C 1.52997 * 109.47250 * 180.02562 * 21 19 18 23 23 H 1.09000 * 110.53506 * 55.69898 * 22 21 19 24 24 N 1.47313 * 110.59972 * 292.86999 * 22 21 19 25 25 C 1.34515 * 106.62176 * 241.47213 * 24 22 21 26 26 O 1.21537 * 123.77443 * 179.97438 * 25 24 22 27 27 N 1.33796 * 112.46081 * 359.97438 * 25 24 22 28 28 C 1.35119 * 111.68085 * 359.90959 * 27 25 24 29 29 O 1.21236 * 127.33831 * 180.10058 * 28 27 25 30 30 H 0.97001 * 120.00668 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99627 * 359.97438 * 9 7 2 32 32 H 1.08993 * 109.47194 * 59.99623 * 12 10 9 33 33 H 1.09002 * 109.46695 * 299.99637 * 12 10 9 34 34 H 1.08992 * 109.47063 * 299.99823 * 13 12 10 35 35 H 1.09004 * 109.46733 * 179.97438 * 13 12 10 36 36 H 1.09002 * 109.47398 * 59.99826 * 14 13 12 37 37 H 1.09001 * 109.47194 * 180.02562 * 14 13 12 38 38 H 1.08996 * 109.47853 * 180.02562 * 15 14 13 39 39 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 40 40 H 0.97007 * 119.99693 * 95.00333 * 18 16 15 41 41 H 1.08999 * 109.47030 * 300.00189 * 21 19 18 42 42 H 1.09005 * 109.47169 * 59.99938 * 21 19 18 43 43 H 0.96999 * 126.68572 * 61.50489 * 24 22 21 44 44 H 0.96995 * 124.18581 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8913 2.3964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 1 2.9690 -3.5504 0.5889 12 6 2.4222 -4.0355 -1.4375 13 6 3.1868 -5.3608 -1.4375 14 6 2.3091 -6.4559 -0.8282 15 6 1.9452 -6.0771 0.6088 16 6 1.1807 -4.7519 0.6090 17 1 0.2700 -4.8578 0.0194 18 7 0.8317 -4.3895 1.9848 19 6 -0.2868 -4.8861 2.5495 20 8 -1.0046 -5.6327 1.9184 21 6 -0.6455 -4.5138 3.9650 22 6 -1.9505 -5.2078 4.3599 23 1 -1.8669 -6.2860 4.2230 24 7 -3.0791 -4.6723 3.5791 25 6 -3.9350 -4.1287 4.4631 26 8 -4.9805 -3.5939 4.1501 27 7 -3.5068 -4.2425 5.7255 28 6 -2.3173 -4.8799 5.7936 29 8 -1.6762 -5.1358 6.7903 30 1 -0.4851 0.8400 0.0004 31 1 0.3557 -2.3881 0.0002 32 1 3.0470 -3.2551 -1.8718 33 1 1.5115 -4.1418 -2.0269 34 1 4.0974 -5.2549 -0.8480 35 1 3.4456 -5.6308 -2.4614 36 1 1.3984 -6.5618 -1.4177 37 1 2.8540 -7.4000 -0.8278 38 1 1.3203 -6.8574 1.0432 39 1 2.8559 -5.9712 1.1984 40 1 1.4057 -3.7920 2.4894 41 1 0.1519 -4.8307 4.6372 42 1 -0.7722 -3.4334 4.0356 43 1 -3.1847 -4.7057 2.6155 44 1 -3.9908 -3.9095 6.4973 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085228920.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:10 Heat of formation + Delta-G solvation = -88.737483 kcal Electronic energy + Delta-G solvation = -28214.710826 eV Core-core repulsion = 24167.209375 eV Total energy + Delta-G solvation = -4047.501451 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.49895 -39.88580 -38.78948 -38.03449 -36.30542 -34.18936 -34.12290 -33.85031 -31.29753 -31.13106 -29.28013 -27.79463 -25.73120 -23.79612 -22.90944 -22.39062 -21.50702 -21.13796 -20.24825 -19.55722 -18.53290 -17.53494 -17.15406 -16.82283 -16.63020 -16.14917 -15.83029 -15.62084 -15.15363 -14.94577 -14.39735 -14.25227 -14.14020 -13.83138 -13.66685 -13.51709 -13.17355 -12.97950 -12.70496 -12.37090 -12.16427 -11.94159 -11.23020 -11.15419 -10.99339 -10.92859 -10.82876 -10.64809 -10.58187 -10.50340 -10.39563 -10.19773 -9.88757 -9.73858 -9.69227 -9.58879 -8.99988 -8.74006 -7.06703 -5.85540 -3.15730 1.33200 2.26558 2.71040 2.86577 2.92756 3.34626 3.36741 3.42449 3.45034 3.81893 4.29340 4.48976 4.64592 4.84760 4.98381 5.06394 5.15427 5.24396 5.27628 5.44155 5.45219 5.45785 5.63934 5.73090 5.80319 5.81496 5.87191 5.90168 6.04842 6.22887 6.37920 6.39286 6.41338 6.50738 6.68172 6.75318 6.79725 6.81019 6.98890 7.14949 7.61315 7.71172 8.03184 8.31294 8.34611 9.43648 9.98950 10.33904 11.36244 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.009575 B = 0.004100 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.715021 B = 6827.688370 C = 8846.001005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.009 4.009 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.722 5.722 10 C 0.173 3.827 11 H 0.051 0.949 12 C -0.133 4.133 13 C -0.120 4.120 14 C -0.114 4.114 15 C -0.123 4.123 16 C 0.140 3.860 17 H 0.085 0.915 18 N -0.701 5.701 19 C 0.521 3.479 20 O -0.552 6.552 21 C -0.147 4.147 22 C 0.111 3.889 23 H 0.137 0.863 24 N -0.707 5.707 25 C 0.701 3.299 26 O -0.544 6.544 27 N -0.681 5.681 28 C 0.531 3.469 29 O -0.467 6.467 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.405 0.595 41 H 0.118 0.882 42 H 0.110 0.890 43 H 0.449 0.551 44 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.989 -13.867 7.860 15.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.206 4.206 3 Si 0.735 3.265 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.363 5.363 10 C 0.062 3.938 11 H 0.069 0.931 12 C -0.174 4.174 13 C -0.158 4.158 14 C -0.152 4.152 15 C -0.162 4.162 16 C 0.035 3.965 17 H 0.103 0.897 18 N -0.349 5.349 19 C 0.306 3.694 20 O -0.431 6.431 21 C -0.188 4.188 22 C 0.001 3.999 23 H 0.154 0.846 24 N -0.373 5.373 25 C 0.400 3.600 26 O -0.418 6.418 27 N -0.352 5.352 28 C 0.317 3.683 29 O -0.336 6.336 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.240 0.760 41 H 0.136 0.864 42 H 0.128 0.872 43 H 0.296 0.704 44 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 0.452 -14.111 7.723 16.093 hybrid contribution 0.217 1.525 0.097 1.543 sum 0.669 -12.587 7.820 14.833 Atomic orbital electron populations 1.69668 1.05078 1.25655 1.57219 1.24732 0.95440 0.97641 1.02775 0.86176 0.78780 0.84299 0.77234 1.20578 1.21874 1.21914 1.19231 0.90940 0.83961 1.43212 0.91145 1.42419 1.05768 0.99481 1.88595 1.20468 0.93917 0.85747 0.93657 0.93140 1.22220 0.99976 0.95551 0.99670 1.21585 0.98530 0.95663 1.00030 1.21470 0.99928 0.98051 0.95737 1.21864 1.00008 0.97112 0.97248 1.21343 0.99148 0.94106 0.81878 0.89658 1.45878 1.24877 1.48674 1.15513 1.20097 0.81047 0.80316 0.87913 1.90672 1.50930 1.37166 1.64321 1.21899 0.96713 1.03718 0.96468 1.21734 0.88143 1.02399 0.87579 0.84599 1.45653 1.20591 1.60844 1.10217 1.15916 0.83910 0.79294 0.80905 1.91066 1.23231 1.47449 1.80040 1.44390 1.23528 1.56626 1.10650 1.20851 0.80311 0.75891 0.91267 1.90849 1.54773 1.51400 1.36608 0.93484 0.78181 0.91585 0.92459 0.92375 0.92669 0.91961 0.92370 0.91893 0.92013 0.75994 0.86366 0.87211 0.70393 0.72608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.80 13.06 55.49 0.72 -26.08 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.90 21.43 29.55 -169.99 -5.02 16.40 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.24 -6.17 9.93 -15.06 -0.15 -6.32 16 8 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 9 N -0.72 -16.18 4.95 -53.43 -0.26 -16.44 16 10 C 0.17 2.98 2.30 -67.93 -0.16 2.82 16 11 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 12 C -0.13 -2.15 5.50 -26.73 -0.15 -2.30 16 13 C -0.12 -1.51 5.92 -26.73 -0.16 -1.67 16 14 C -0.11 -1.33 5.92 -26.73 -0.16 -1.49 16 15 C -0.12 -1.52 5.49 -26.73 -0.15 -1.67 16 16 C 0.14 2.08 1.97 -67.93 -0.13 1.95 16 17 H 0.09 1.47 7.58 -51.93 -0.39 1.08 16 18 N -0.70 -9.47 4.91 -53.81 -0.26 -9.73 16 19 C 0.52 6.69 7.69 -10.98 -0.08 6.61 16 20 O -0.55 -8.28 14.65 5.56 0.08 -8.20 16 21 C -0.15 -1.42 5.47 -27.88 -0.15 -1.58 16 22 C 0.11 1.05 3.15 -68.21 -0.22 0.84 16 23 H 0.14 1.13 8.01 -51.93 -0.42 0.72 16 24 N -0.71 -7.95 5.88 -59.20 -0.35 -8.30 16 25 C 0.70 8.68 8.99 -88.03 -0.79 7.89 16 26 O -0.54 -8.86 18.04 5.33 0.10 -8.76 16 27 N -0.68 -6.48 5.72 -15.71 -0.09 -6.57 16 28 C 0.53 5.20 8.17 -10.40 -0.08 5.12 16 29 O -0.47 -5.52 18.02 5.60 0.10 -5.42 16 30 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.38 9.54 7.80 -40.82 -0.32 9.22 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.41 5.22 8.60 -40.82 -0.35 4.87 16 41 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.45 5.44 8.18 -40.82 -0.33 5.10 16 44 H 0.43 3.20 8.96 -40.82 -0.37 2.84 16 LS Contribution 366.90 15.07 5.53 5.53 Total: -1.00 -32.04 366.90 -8.30 -40.35 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: -6.37 Total: 17.36 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: -2.47 Total: 9.86 kcal Atomic # 7 Polarization: -66.88 SS G_CDS: -0.24 Total: -67.12 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: 0.28 Total: -22.38 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.04 -8.30 -40.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085228920.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.391 kcal (2) G-P(sol) polarization free energy of solvation -32.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds