Wall clock time and date at job start Tue Mar 31 2020 05:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99626 * 2 1 4 4 H 1.48496 * 109.47306 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47341 * 300.00459 * 3 2 1 6 6 H 1.48505 * 109.46832 * 60.00214 * 3 2 1 7 7 C 1.38802 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00397 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00349 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00263 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47092 * 35.00025 * 10 9 7 12 12 C 1.52997 * 109.47007 * 275.00076 * 10 9 7 13 13 C 1.53002 * 109.46817 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47233 * 60.00194 * 13 12 10 15 15 C 1.52997 * 109.47060 * 299.99657 * 14 13 12 16 16 C 1.52999 * 109.47317 * 59.99960 * 15 14 13 17 17 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 18 18 N 1.46496 * 109.47487 * 179.97438 * 16 15 14 19 19 C 1.34778 * 120.00072 * 275.00191 * 18 16 15 20 20 O 1.21273 * 120.00144 * 359.97438 * 19 18 16 21 21 C 1.50703 * 119.99935 * 179.97438 * 19 18 16 22 22 C 1.52997 * 109.47250 * 180.02562 * 21 19 18 23 23 H 1.09000 * 110.53506 * 55.69898 * 22 21 19 24 24 N 1.47313 * 110.59972 * 292.86999 * 22 21 19 25 25 C 1.34515 * 106.62176 * 241.47213 * 24 22 21 26 26 O 1.21537 * 123.77443 * 179.97438 * 25 24 22 27 27 N 1.33796 * 112.46081 * 359.97438 * 25 24 22 28 28 C 1.35119 * 111.68085 * 359.90959 * 27 25 24 29 29 O 1.21236 * 127.33831 * 180.10058 * 28 27 25 30 30 H 0.97001 * 120.00668 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99627 * 359.97438 * 9 7 2 32 32 H 1.08993 * 109.47194 * 59.99623 * 12 10 9 33 33 H 1.09002 * 109.46695 * 299.99637 * 12 10 9 34 34 H 1.08992 * 109.47063 * 299.99823 * 13 12 10 35 35 H 1.09004 * 109.46733 * 179.97438 * 13 12 10 36 36 H 1.09002 * 109.47398 * 59.99826 * 14 13 12 37 37 H 1.09001 * 109.47194 * 180.02562 * 14 13 12 38 38 H 1.08996 * 109.47853 * 180.02562 * 15 14 13 39 39 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 40 40 H 0.97007 * 119.99693 * 95.00333 * 18 16 15 41 41 H 1.08999 * 109.47030 * 300.00189 * 21 19 18 42 42 H 1.09005 * 109.47169 * 59.99938 * 21 19 18 43 43 H 0.96999 * 126.68572 * 61.50489 * 24 22 21 44 44 H 0.96995 * 124.18581 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8913 2.3964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 1 2.9690 -3.5504 0.5889 12 6 2.4222 -4.0355 -1.4375 13 6 3.1868 -5.3608 -1.4375 14 6 2.3091 -6.4559 -0.8282 15 6 1.9452 -6.0771 0.6088 16 6 1.1807 -4.7519 0.6090 17 1 0.2700 -4.8578 0.0194 18 7 0.8317 -4.3895 1.9848 19 6 -0.2868 -4.8861 2.5495 20 8 -1.0046 -5.6327 1.9184 21 6 -0.6455 -4.5138 3.9650 22 6 -1.9505 -5.2078 4.3599 23 1 -1.8669 -6.2860 4.2230 24 7 -3.0791 -4.6723 3.5791 25 6 -3.9350 -4.1287 4.4631 26 8 -4.9805 -3.5939 4.1501 27 7 -3.5068 -4.2425 5.7255 28 6 -2.3173 -4.8799 5.7936 29 8 -1.6762 -5.1358 6.7903 30 1 -0.4851 0.8400 0.0004 31 1 0.3557 -2.3881 0.0002 32 1 3.0470 -3.2551 -1.8718 33 1 1.5115 -4.1418 -2.0269 34 1 4.0974 -5.2549 -0.8480 35 1 3.4456 -5.6308 -2.4614 36 1 1.3984 -6.5618 -1.4177 37 1 2.8540 -7.4000 -0.8278 38 1 1.3203 -6.8574 1.0432 39 1 2.8559 -5.9712 1.1984 40 1 1.4057 -3.7920 2.4894 41 1 0.1519 -4.8307 4.6372 42 1 -0.7722 -3.4334 4.0356 43 1 -3.1847 -4.7057 2.6155 44 1 -3.9908 -3.9095 6.4973 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085228920.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:09 Heat of formation + Delta-G solvation = -115.069754 kcal Electronic energy + Delta-G solvation = -28215.852679 eV Core-core repulsion = 24167.209375 eV Total energy + Delta-G solvation = -4048.643304 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.41095 -41.00844 -39.75531 -39.21988 -37.33497 -35.79834 -35.13688 -34.94787 -32.97840 -32.14328 -30.43433 -29.26168 -26.68630 -25.58900 -23.85313 -23.46032 -22.56201 -22.32475 -21.35211 -20.72218 -19.46382 -19.15299 -18.34671 -17.80588 -17.61991 -17.27796 -16.85169 -16.67774 -16.50576 -16.10676 -15.66258 -15.42824 -15.34830 -15.13323 -14.78729 -14.60826 -14.57243 -14.08446 -13.95706 -13.56371 -13.45960 -12.92720 -12.90375 -12.81794 -12.24895 -12.18073 -12.12470 -11.99572 -11.97917 -11.62235 -11.52212 -11.48039 -11.40177 -11.08813 -10.98560 -10.70979 -10.55095 -9.88049 -8.97347 -7.91143 -5.18951 0.45787 1.38666 1.47648 1.49739 1.58001 1.68175 1.90600 2.03228 2.35937 2.57316 2.93775 3.43200 3.45285 3.72743 3.81997 3.88517 3.94344 4.19625 4.30134 4.36178 4.37406 4.46921 4.50031 4.56656 4.63880 4.66678 4.74620 4.99497 5.04254 5.07060 5.22353 5.28195 5.33406 5.35353 5.51062 5.55834 5.60385 5.70855 5.74168 5.86491 6.29368 6.31369 6.64228 7.06791 7.29652 7.36907 8.11832 8.34620 9.31720 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.009575 B = 0.004100 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.715021 B = 6827.688370 C = 8846.001005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.072 4.072 3 Si 0.962 3.038 4 H -0.264 1.264 5 H -0.302 1.302 6 H -0.298 1.298 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.730 5.730 10 C 0.171 3.829 11 H 0.058 0.942 12 C -0.129 4.129 13 C -0.111 4.111 14 C -0.111 4.111 15 C -0.113 4.113 16 C 0.149 3.851 17 H 0.057 0.943 18 N -0.703 5.703 19 C 0.518 3.482 20 O -0.574 6.574 21 C -0.138 4.138 22 C 0.114 3.886 23 H 0.155 0.845 24 N -0.706 5.706 25 C 0.703 3.297 26 O -0.587 6.587 27 N -0.668 5.668 28 C 0.545 3.455 29 O -0.480 6.480 30 H 0.247 0.753 31 H 0.369 0.631 32 H 0.046 0.954 33 H 0.040 0.960 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.409 0.591 41 H 0.149 0.851 42 H 0.106 0.894 43 H 0.445 0.555 44 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.156 -15.491 8.820 18.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.264 4.264 3 Si 0.793 3.207 4 H -0.188 1.188 5 H -0.230 1.230 6 H -0.225 1.225 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.369 5.369 10 C 0.062 3.938 11 H 0.076 0.924 12 C -0.170 4.170 13 C -0.149 4.149 14 C -0.149 4.149 15 C -0.152 4.152 16 C 0.044 3.956 17 H 0.075 0.925 18 N -0.352 5.352 19 C 0.305 3.695 20 O -0.455 6.455 21 C -0.178 4.178 22 C 0.005 3.995 23 H 0.172 0.828 24 N -0.370 5.370 25 C 0.402 3.598 26 O -0.464 6.464 27 N -0.339 5.339 28 C 0.331 3.669 29 O -0.350 6.350 30 H 0.055 0.945 31 H 0.201 0.799 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.245 0.755 41 H 0.167 0.833 42 H 0.125 0.875 43 H 0.291 0.709 44 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 2.697 -15.784 8.709 18.228 hybrid contribution -0.410 1.942 -0.238 1.999 sum 2.287 -13.842 8.472 16.389 Atomic orbital electron populations 1.69822 1.06550 1.25550 1.60010 1.25408 0.96070 1.00630 1.04326 0.85227 0.78523 0.80718 0.76216 1.18819 1.23014 1.22510 1.19589 0.91350 0.84909 1.40001 0.90379 1.42579 1.05190 1.00689 1.88488 1.20686 0.94034 0.84404 0.94654 0.92410 1.22097 0.99414 0.97350 0.98130 1.21517 0.98460 0.93495 1.01406 1.21476 0.99726 0.98834 0.94890 1.21795 1.00186 0.95157 0.98098 1.21125 0.97685 0.94625 0.82181 0.92518 1.45882 1.25400 1.48952 1.14965 1.20571 0.80305 0.79685 0.88911 1.90667 1.51394 1.38237 1.65193 1.21873 0.97627 1.03474 0.94854 1.21864 0.87322 1.03323 0.86977 0.82793 1.45712 1.20927 1.60330 1.10079 1.15986 0.83407 0.78798 0.81631 1.91037 1.25128 1.49432 1.80814 1.44213 1.23494 1.56165 1.10056 1.20696 0.79914 0.75286 0.91005 1.90860 1.55087 1.52003 1.37084 0.94451 0.79917 0.93556 0.94145 0.91062 0.91266 0.92834 0.89659 0.91736 0.90369 0.75531 0.83292 0.87547 0.70911 0.71395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.31 13.06 21.65 0.28 -57.03 16 2 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 3 Si 0.96 44.38 29.55 68.60 2.03 46.40 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 7 C -0.23 -11.48 9.93 84.03 0.83 -10.64 16 8 H 0.08 3.79 7.83 -2.91 -0.02 3.76 16 9 N -0.73 -32.98 4.95 -322.94 -1.60 -34.57 16 10 C 0.17 5.76 2.30 44.99 0.10 5.87 16 11 H 0.06 1.89 8.08 -2.39 -0.02 1.87 16 12 C -0.13 -4.08 5.50 30.59 0.17 -3.92 16 13 C -0.11 -2.50 5.92 30.60 0.18 -2.31 16 14 C -0.11 -2.28 5.92 30.59 0.18 -2.10 16 15 C -0.11 -2.51 5.49 30.59 0.17 -2.34 16 16 C 0.15 4.30 1.97 44.99 0.09 4.39 16 17 H 0.06 1.98 7.58 -2.39 -0.02 1.96 16 18 N -0.70 -18.19 4.91 -442.54 -2.17 -20.36 16 19 C 0.52 12.70 7.69 87.66 0.67 13.37 16 20 O -0.57 -16.81 14.65 -3.01 -0.04 -16.85 16 21 C -0.14 -2.40 5.47 29.85 0.16 -2.24 16 22 C 0.11 1.96 3.15 44.37 0.14 2.10 16 23 H 0.15 2.20 8.01 -2.39 -0.02 2.18 16 24 N -0.71 -15.56 5.88 -459.62 -2.70 -18.27 16 25 C 0.70 17.24 8.99 179.44 1.61 18.86 16 26 O -0.59 -19.47 18.04 -3.83 -0.07 -19.53 16 27 N -0.67 -11.99 5.72 -440.67 -2.52 -14.51 16 28 C 0.54 9.64 8.17 87.88 0.72 10.36 16 29 O -0.48 -10.26 18.02 -2.89 -0.05 -10.32 16 30 H 0.25 14.43 8.31 -92.71 -0.77 13.65 16 31 H 0.37 18.84 7.80 -92.71 -0.72 18.12 16 32 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 38 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.41 9.94 8.60 -92.70 -0.80 9.14 16 41 H 0.15 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 43 H 0.45 10.87 8.18 -92.71 -0.76 10.11 16 44 H 0.44 6.09 8.96 -92.71 -0.83 5.26 16 Total: -1.00 -70.02 366.90 -3.38 -73.40 By element: Atomic # 1 Polarization: 45.73 SS G_CDS: -2.03 Total: 43.69 kcal Atomic # 6 Polarization: 22.44 SS G_CDS: 5.50 Total: 27.94 kcal Atomic # 7 Polarization: -136.03 SS G_CDS: -8.71 Total: -144.74 kcal Atomic # 8 Polarization: -46.54 SS G_CDS: -0.17 Total: -46.70 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -70.02 -3.38 -73.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085228920.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.666 kcal (2) G-P(sol) polarization free energy of solvation -70.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds