Wall clock time and date at job start Tue Mar 31 2020 04:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35375 * 116.99658 * 2 1 4 4 C 1.36094 * 125.57525 * 180.02562 * 3 2 1 5 5 C 1.39913 * 107.17167 * 180.02562 * 4 3 2 6 6 C 1.37821 * 106.67846 * 359.97438 * 5 4 3 7 7 C 1.46134 * 126.02967 * 179.97438 * 6 5 4 8 8 O 1.21764 * 119.99688 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99836 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99715 * 180.27593 * 9 7 6 11 11 C 1.52997 * 109.47006 * 179.72867 * 10 9 7 12 12 C 1.53007 * 109.51017 * 304.99786 * 11 10 9 13 13 C 1.53292 * 109.51240 * 184.90168 * 11 10 9 14 14 N 1.47155 * 108.38660 * 187.77026 * 13 11 10 15 15 C 1.36939 * 120.98301 * 230.51047 * 14 13 11 16 16 H 1.08003 * 119.99658 * 153.32155 * 15 14 13 17 17 C 1.38803 * 120.00053 * 333.32731 * 15 14 13 18 18 N 1.31617 * 120.00250 * 343.54820 * 17 15 14 19 19 Si 1.86798 * 120.00036 * 163.55499 * 17 15 14 20 20 H 1.48500 * 109.47256 * 59.99782 * 19 17 15 21 21 H 1.48501 * 109.47588 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47143 * 299.99514 * 19 17 15 23 23 C 1.47153 * 118.03533 * 50.53256 * 14 13 11 24 24 C 1.53295 * 108.38358 * 309.47024 * 23 14 13 25 25 O 1.42954 * 109.26811 * 52.27237 * 24 23 14 26 26 O 1.34004 * 125.57659 * 0.27548 * 3 2 1 27 27 H 1.08997 * 109.47176 * 59.99738 * 1 2 3 28 28 H 1.08999 * 109.46842 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46821 * 299.99492 * 1 2 3 30 30 H 1.07998 * 126.41348 * 0.03138 * 4 3 2 31 31 H 1.08003 * 126.65796 * 179.97438 * 5 4 3 32 32 H 0.97000 * 120.00106 * 0.02562 * 9 7 6 33 33 H 1.08998 * 109.46982 * 299.72651 * 10 9 7 34 34 H 1.08999 * 109.46766 * 59.72885 * 10 9 7 35 35 H 1.08999 * 109.47230 * 60.00480 * 12 11 10 36 36 H 1.09001 * 109.46724 * 180.02562 * 12 11 10 37 37 H 1.08999 * 109.47479 * 299.99934 * 12 11 10 38 38 H 1.09002 * 109.68049 * 307.49104 * 13 11 10 39 39 H 1.09003 * 109.68686 * 68.01089 * 13 11 10 40 40 H 0.97005 * 120.00393 * 180.02562 * 18 17 15 41 41 H 1.09007 * 109.68137 * 69.18410 * 23 14 13 42 42 H 1.08993 * 109.68612 * 189.74461 * 23 14 13 43 43 H 1.08996 * 109.51394 * 172.22726 * 24 23 14 44 44 H 1.09007 * 109.50993 * 292.32251 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0436 1.2062 0.0000 4 6 3.3893 1.4092 -0.0005 5 6 3.5983 2.7927 0.0003 6 6 2.3520 3.3810 0.0007 7 6 2.0792 4.8167 0.0020 8 8 3.0016 5.6116 0.0025 9 7 0.8068 5.2608 0.0028 10 6 0.5333 6.7001 -0.0020 11 6 -0.9790 6.9319 -0.0068 12 6 -1.6061 6.1884 -1.1880 13 6 -1.2667 8.4320 -0.1352 14 7 -2.7108 8.6453 0.0504 15 6 -3.4362 9.3804 -0.8490 16 1 -4.4929 9.1936 -0.9715 17 6 -2.8133 10.3652 -1.6031 18 7 -1.6312 10.8196 -1.2447 19 14 -3.6530 11.0460 -3.1265 20 1 -4.9529 11.6544 -2.7452 21 1 -2.7871 12.0794 -3.7491 22 1 -3.8868 9.9459 -4.0963 23 6 -3.3524 8.0457 1.2312 24 6 -2.9630 6.5643 1.2930 25 8 -1.5404 6.4468 1.2151 26 8 1.4263 2.3956 0.0052 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 4.1528 0.6455 -0.0014 31 1 4.5514 3.3008 0.0006 32 1 0.0720 4.6275 0.0028 33 1 0.9678 7.1554 0.8880 34 1 0.9728 7.1504 -0.8920 35 1 -1.4027 5.1215 -1.0951 36 1 -2.6834 6.3543 -1.1910 37 1 -1.1790 6.5600 -2.1194 38 1 -0.7137 8.9786 0.6288 39 1 -0.9678 8.7799 -1.1241 40 1 -1.1961 11.5082 -1.7716 41 1 -3.0093 8.5533 2.1328 42 1 -4.4352 8.1375 1.1470 43 1 -3.3130 6.1348 2.2316 44 1 -3.4185 6.0330 0.4573 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108299836.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:35:31 Heat of formation + Delta-G solvation = -90.995037 kcal Electronic energy + Delta-G solvation = -28242.927613 eV Core-core repulsion = 24163.035517 eV Total energy + Delta-G solvation = -4079.892097 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.82218 -41.12348 -40.17902 -39.45555 -36.61593 -36.02792 -34.29505 -33.31931 -33.17946 -30.74215 -29.59405 -28.50840 -27.98847 -27.00759 -25.00937 -23.96232 -23.06724 -22.69743 -21.48595 -20.43399 -19.94333 -19.02898 -18.79198 -18.15031 -17.48925 -16.99680 -16.91613 -16.34873 -16.26968 -16.17863 -15.76758 -15.56983 -15.47975 -15.21856 -14.76065 -14.56251 -14.29226 -14.04738 -13.98844 -13.96761 -13.48155 -13.20184 -13.01755 -12.94279 -12.76515 -12.54575 -12.51003 -12.45242 -12.18616 -11.97572 -11.87362 -11.53330 -11.12548 -11.10682 -10.76572 -10.50668 -10.30087 -9.16348 -8.71551 -7.89503 -5.36902 -0.06543 1.10154 1.30259 1.46901 1.48762 1.55712 1.93605 2.07108 2.25493 2.48546 2.76659 3.25068 3.48445 3.71937 3.76337 3.92488 3.99053 4.07466 4.22929 4.27421 4.33126 4.40468 4.44081 4.53087 4.54319 4.60917 4.68874 4.69298 4.75691 4.85681 4.93117 5.03183 5.09397 5.18812 5.20298 5.25425 5.32882 5.42183 5.52991 5.61478 6.04717 6.29044 6.35244 6.38666 6.96510 7.07162 7.76019 8.30328 9.16127 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.018589 B = 0.002979 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.893718 B = 9396.703489 C = 9878.317750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.265 6.265 3 C 0.215 3.785 4 C -0.241 4.241 5 C -0.074 4.074 6 C -0.124 4.124 7 C 0.604 3.396 8 O -0.561 6.561 9 N -0.699 5.699 10 C 0.147 3.853 11 C 0.093 3.907 12 C -0.153 4.153 13 C 0.169 3.831 14 N -0.607 5.607 15 C -0.262 4.262 16 H 0.073 0.927 17 C -0.048 4.048 18 N -0.935 5.935 19 Si 0.967 3.033 20 H -0.276 1.276 21 H -0.297 1.297 22 H -0.275 1.275 23 C 0.102 3.898 24 C 0.052 3.948 25 O -0.387 6.387 26 O -0.192 6.192 27 H 0.067 0.933 28 H 0.139 0.861 29 H 0.066 0.934 30 H 0.189 0.811 31 H 0.178 0.822 32 H 0.413 0.587 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.057 0.943 38 H -0.005 1.005 39 H 0.068 0.932 40 H 0.251 0.749 41 H 0.013 0.987 42 H 0.072 0.928 43 H 0.117 0.883 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.466 -23.419 2.181 23.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.179 6.179 3 C 0.118 3.882 4 C -0.261 4.261 5 C -0.095 4.095 6 C -0.175 4.175 7 C 0.392 3.608 8 O -0.443 6.443 9 N -0.350 5.350 10 C 0.023 3.977 11 C 0.051 3.949 12 C -0.210 4.210 13 C 0.042 3.958 14 N -0.331 5.331 15 C -0.391 4.391 16 H 0.091 0.909 17 C -0.244 4.244 18 N -0.581 5.581 19 Si 0.795 3.205 20 H -0.202 1.202 21 H -0.223 1.223 22 H -0.201 1.201 23 C -0.023 4.023 24 C -0.025 4.025 25 O -0.307 6.307 26 O -0.093 6.093 27 H 0.085 0.915 28 H 0.157 0.843 29 H 0.085 0.915 30 H 0.207 0.793 31 H 0.195 0.805 32 H 0.251 0.749 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.013 0.987 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.031 0.969 42 H 0.091 0.909 43 H 0.135 0.865 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.000 -22.912 2.262 23.368 hybrid contribution -0.983 1.009 -0.790 1.615 sum 3.018 -21.903 1.472 22.159 Atomic orbital electron populations 1.23499 0.74758 1.07043 1.03104 1.86427 1.24998 1.17738 1.88734 1.21144 0.90073 0.78333 0.98693 1.21097 0.92507 0.96756 1.15710 1.22270 0.97713 0.93241 0.96258 1.21603 0.87846 0.86589 1.21413 1.16563 0.83124 0.84687 0.76430 1.90884 1.45168 1.54894 1.53319 1.45751 1.07336 1.08411 1.73456 1.21158 0.93362 0.80718 1.02462 1.22210 0.91495 0.95571 0.85582 1.22109 1.02083 0.99677 0.97180 1.21039 0.84582 0.90093 1.00071 1.44242 1.04942 1.59906 1.24041 1.19460 0.93899 1.11324 1.14448 0.90912 1.25796 0.98250 0.97076 1.03256 1.70166 1.17836 1.30365 1.39739 0.85354 0.77644 0.77622 0.79905 1.20172 1.22314 1.20086 1.21808 0.97736 0.93729 0.89013 1.23115 0.80756 0.95835 1.02820 1.87835 1.21885 1.83283 1.37654 1.83925 1.37686 1.14478 1.73162 0.91469 0.84253 0.91477 0.79340 0.80472 0.74941 0.91778 0.90195 0.90912 0.91805 0.92381 0.98681 0.91332 0.94001 0.96930 0.90926 0.86515 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 10.74 113.37 1.22 1.31 16 2 O -0.27 -4.16 10.55 -64.45 -0.68 -4.84 16 3 C 0.21 4.17 7.86 67.32 0.53 4.70 16 4 C -0.24 -4.31 10.89 22.18 0.24 -4.07 16 5 C -0.07 -1.60 10.66 22.58 0.24 -1.36 16 6 C -0.12 -3.21 7.15 24.22 0.17 -3.03 16 7 C 0.60 18.86 7.77 86.29 0.67 19.53 16 8 O -0.56 -21.10 16.87 -4.55 -0.08 -21.18 16 9 N -0.70 -20.77 5.19 -467.58 -2.43 -23.19 16 10 C 0.15 5.14 4.85 86.38 0.42 5.56 16 11 C 0.09 3.41 0.78 -10.69 -0.01 3.40 16 12 C -0.15 -5.00 7.87 71.98 0.57 -4.44 16 13 C 0.17 8.05 4.11 86.35 0.35 8.41 16 14 N -0.61 -29.59 2.57 -697.53 -1.79 -31.38 16 15 C -0.26 -13.84 9.65 84.03 0.81 -13.03 16 16 H 0.07 3.70 7.88 -2.91 -0.02 3.67 16 17 C -0.05 -2.62 4.95 84.86 0.42 -2.20 16 18 N -0.94 -54.66 11.14 21.65 0.24 -54.42 16 19 Si 0.97 43.79 29.58 68.60 2.03 45.82 16 20 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 21 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 22 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 23 C 0.10 4.09 6.74 86.35 0.58 4.67 16 24 C 0.05 1.65 6.60 72.08 0.48 2.13 16 25 O -0.39 -13.70 10.17 -148.98 -1.52 -15.22 16 26 O -0.19 -4.31 9.88 13.51 0.13 -4.18 16 27 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.14 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.19 2.27 8.06 -2.91 -0.02 2.24 16 31 H 0.18 3.36 8.06 -2.91 -0.02 3.34 16 32 H 0.41 10.74 6.74 -92.71 -0.62 10.11 16 33 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 35 H 0.07 1.90 6.58 -2.39 -0.02 1.89 16 36 H 0.06 2.25 6.12 -2.39 -0.01 2.23 16 37 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 39 H 0.07 3.65 6.16 -2.39 -0.01 3.63 16 40 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 41 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 42 H 0.07 2.69 7.96 -2.39 -0.02 2.67 16 43 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 44 H 0.06 1.80 6.26 -2.38 -0.01 1.79 16 Total: -1.00 -68.53 363.27 3.01 -65.52 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.40 Total: 21.50 kcal Atomic # 6 Polarization: 14.87 SS G_CDS: 6.69 Total: 21.56 kcal Atomic # 7 Polarization: -105.01 SS G_CDS: -3.98 Total: -108.99 kcal Atomic # 8 Polarization: -43.27 SS G_CDS: -2.14 Total: -45.41 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -68.53 3.01 -65.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108299836.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.477 kcal (2) G-P(sol) polarization free energy of solvation -68.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds