Wall clock time and date at job start Tue Mar 31 2020 05:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86802 * 119.99691 * 2 1 4 4 H 1.48498 * 109.47243 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.46994 * 120.00112 * 3 2 1 6 6 H 1.48500 * 109.46759 * 240.00051 * 3 2 1 7 7 C 1.38944 * 120.00172 * 180.27576 * 2 1 3 8 8 H 1.07998 * 120.00502 * 179.72144 * 7 2 1 9 9 N 1.37105 * 119.99844 * 359.72427 * 7 2 1 10 10 C 1.34780 * 120.00018 * 179.97438 * 9 7 2 11 11 O 1.21287 * 119.99797 * 0.02562 * 10 9 7 12 12 C 1.50694 * 119.99879 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.46924 * 186.04202 * 12 10 9 14 14 C 1.48536 * 111.00249 * 176.47696 * 13 12 10 15 15 C 1.54319 * 104.67469 * 200.80522 * 14 13 12 16 16 H 1.08996 * 111.82194 * 262.42446 * 15 14 13 17 17 C 1.54160 * 108.86398 * 138.40361 * 15 14 13 18 18 C 1.57292 * 103.16422 * 222.93761 * 17 15 14 19 19 C 1.54842 * 102.82098 * 38.42760 * 18 17 15 20 20 C 1.54167 * 104.32187 * 321.56235 * 19 18 17 21 21 N 1.46507 * 111.79216 * 261.29199 * 20 19 18 22 22 C 1.34776 * 119.99871 * 299.22846 * 21 20 19 23 23 O 1.21349 * 120.00139 * 359.97438 * 22 21 20 24 24 C 1.49449 * 119.99532 * 180.02562 * 22 21 20 25 25 N 1.34786 * 119.99545 * 179.97438 * 24 22 21 26 26 O 1.21349 * 120.00329 * 359.97438 * 24 22 21 27 27 C 1.48534 * 111.00166 * 61.07016 * 13 12 10 28 28 H 0.97001 * 119.99735 * 180.02562 * 1 2 3 29 29 H 0.96998 * 119.99970 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.47611 * 306.03651 * 12 10 9 31 31 H 1.08997 * 109.47051 * 66.04353 * 12 10 9 32 32 H 1.08999 * 110.39475 * 319.60628 * 14 13 12 33 33 H 1.09009 * 110.39411 * 81.88999 * 14 13 12 34 34 H 1.08999 * 110.46503 * 342.38533 * 17 15 14 35 35 H 1.09004 * 110.45930 * 104.96332 * 17 15 14 36 36 H 1.09006 * 110.94086 * 279.98617 * 18 17 15 37 37 H 1.09002 * 110.65848 * 156.74303 * 18 17 15 38 38 H 1.08997 * 110.46609 * 202.84686 * 19 18 17 39 39 H 1.09006 * 110.45876 * 80.26852 * 19 18 17 40 40 H 0.96992 * 119.99627 * 119.22881 * 21 20 19 41 41 H 0.96992 * 120.00489 * 359.97438 * 25 24 22 42 42 H 0.97002 * 119.99490 * 179.97438 * 25 24 22 43 43 H 1.08997 * 110.39458 * 277.99091 * 27 13 12 44 44 H 1.08993 * 110.39370 * 40.40068 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2830 2.7465 0.0006 5 1 3.1018 1.6965 1.2125 6 1 3.1018 1.6964 -1.2125 7 6 2.0089 -1.2033 -0.0058 8 1 3.0889 -1.2033 -0.0103 9 7 1.3234 -2.3906 -0.0058 10 6 1.9973 -3.5579 -0.0119 11 8 3.2101 -3.5578 -0.0170 12 6 1.2438 -4.8629 -0.0113 13 7 2.1925 -5.9759 0.1271 14 6 1.4789 -7.2756 0.2165 15 6 2.4929 -8.2337 0.8763 16 1 3.0191 -8.8382 0.1375 17 6 1.7538 -9.1073 1.9093 18 6 2.7359 -9.1174 3.1379 19 6 3.2830 -7.6690 3.1524 20 6 3.4586 -7.3127 1.6628 21 7 4.8471 -7.4757 1.2246 22 6 5.8255 -6.7506 1.8021 23 8 5.5563 -5.9625 2.6847 24 6 7.2417 -6.9165 1.3547 25 7 8.2201 -6.1910 1.9319 26 8 7.5109 -7.7043 0.4718 27 6 2.9405 -5.8818 1.4069 28 1 -0.4850 -0.8401 0.0004 29 1 0.3534 -2.3906 -0.0014 30 1 0.5426 -4.8773 0.8231 31 1 0.6961 -4.9666 -0.9480 32 1 0.5886 -7.1782 0.8377 33 1 1.2101 -7.6306 -0.7785 34 1 0.7926 -8.6624 2.1665 35 1 1.6163 -10.1180 1.5248 36 1 3.5432 -9.8338 2.9855 37 1 2.1964 -9.3359 4.0596 38 1 4.2417 -7.6289 3.6695 39 1 2.5666 -6.9957 3.6233 40 1 5.0621 -8.1053 0.5189 41 1 8.0050 -5.5611 2.6374 42 1 9.1394 -6.2989 1.6418 43 1 3.7749 -5.1875 1.3090 44 1 2.2767 -5.5684 2.2126 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111860206.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:50 Heat of formation + Delta-G solvation = -94.090170 kcal Electronic energy + Delta-G solvation = -28655.188359 eV Core-core repulsion = 24607.454798 eV Total energy + Delta-G solvation = -4047.733560 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.13424 -39.83823 -38.38414 -37.89038 -35.40952 -34.37503 -34.09629 -33.33490 -31.12196 -30.36983 -29.45768 -26.41542 -25.68452 -24.90411 -23.88734 -21.92419 -21.00034 -20.17297 -19.52378 -19.32672 -18.57724 -17.85931 -17.35993 -16.50038 -16.14997 -15.96231 -15.90090 -15.43896 -15.11343 -14.81184 -14.29619 -14.15333 -13.97807 -13.78334 -13.66445 -13.46609 -12.87335 -12.68283 -12.26587 -12.05414 -11.96356 -11.61456 -11.37134 -11.26258 -11.18871 -11.17682 -10.99662 -10.89548 -10.82313 -10.70771 -10.19034 -10.03406 -9.83572 -9.64504 -9.49610 -9.12070 -8.49826 -8.08957 -7.98006 -6.72985 -3.85715 1.39693 2.43040 3.20985 3.32837 3.36334 3.56713 3.77195 3.86834 3.97055 4.07206 4.30565 4.39663 4.51871 4.62184 4.88833 5.02333 5.07834 5.12094 5.21669 5.25832 5.32962 5.41558 5.57573 5.60108 5.66897 5.69094 5.76965 5.80986 5.85169 5.97660 6.00049 6.06965 6.11416 6.29588 6.37233 6.58849 6.79903 7.05444 7.13197 7.28974 7.74727 7.83227 7.98965 8.10771 8.62734 8.83246 9.50122 9.91209 10.70550 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.012228 B = 0.003809 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.282293 B = 7349.873898 C = 8951.534919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.009 4.009 3 Si 1.091 2.909 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.380 4.380 8 H 0.098 0.902 9 N -0.576 5.576 10 C 0.445 3.555 11 O -0.569 6.569 12 C 0.034 3.966 13 N -0.486 5.486 14 C 0.032 3.968 15 C -0.095 4.095 16 H 0.093 0.907 17 C -0.118 4.118 18 C -0.124 4.124 19 C -0.123 4.123 20 C 0.171 3.829 21 N -0.675 5.675 22 C 0.508 3.492 23 O -0.509 6.509 24 C 0.517 3.483 25 N -0.823 5.823 26 O -0.527 6.527 27 C 0.037 3.963 28 H 0.260 0.740 29 H 0.375 0.625 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.411 0.589 41 H 0.415 0.585 42 H 0.409 0.591 43 H 0.114 0.886 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.531 -19.106 5.899 20.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.212 4.212 3 Si 0.917 3.083 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.509 4.509 8 H 0.116 0.884 9 N -0.215 5.215 10 C 0.231 3.769 11 O -0.452 6.452 12 C -0.097 4.097 13 N -0.210 5.210 14 C -0.096 4.096 15 C -0.114 4.114 16 H 0.111 0.889 17 C -0.156 4.156 18 C -0.161 4.161 19 C -0.162 4.162 20 C 0.085 3.915 21 N -0.328 5.328 22 C 0.288 3.712 23 O -0.384 6.384 24 C 0.296 3.704 25 N -0.388 5.388 26 O -0.402 6.402 27 C -0.091 4.091 28 H 0.072 0.928 29 H 0.208 0.792 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.247 0.753 41 H 0.246 0.754 42 H 0.241 0.759 43 H 0.132 0.868 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.308 -17.346 5.473 19.252 hybrid contribution -0.630 -1.626 0.425 1.795 sum 5.678 -18.972 5.898 20.664 Atomic orbital electron populations 1.70903 1.06506 1.29324 1.47423 1.26485 0.96543 1.02578 0.95559 0.83140 0.74438 0.73682 0.77061 1.20419 1.21039 1.21021 1.20517 0.94625 0.83839 1.51923 0.88393 1.41930 1.08119 1.05523 1.65903 1.19623 0.88449 0.84294 0.84582 1.90513 1.13545 1.86743 1.54390 1.22076 0.94210 0.91656 1.01805 1.65228 1.21794 1.00124 1.33839 1.23360 0.95115 0.90334 1.00778 1.22709 0.95523 0.95916 0.97277 0.88873 1.22919 0.98221 0.99575 0.94848 1.22952 0.98498 0.96632 0.98068 1.22698 1.02378 0.96574 0.94519 1.21635 0.79773 0.96026 0.94088 1.45588 1.05873 1.42054 1.39283 1.19930 0.86285 0.81759 0.83274 1.90798 1.83409 1.34390 1.29795 1.20209 0.87198 0.80906 0.82130 1.43513 1.10080 1.43793 1.41454 1.90793 1.83859 1.35916 1.29668 1.23588 1.00006 0.95652 0.89829 0.92817 0.79227 0.93454 0.89075 0.93401 0.89883 0.90764 0.91059 0.91373 0.91295 0.90489 0.90288 0.75258 0.75430 0.75868 0.86789 0.93444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.55 13.68 55.50 0.76 -24.79 16 2 C -0.01 -0.26 5.50 -17.47 -0.10 -0.36 16 3 Si 1.09 24.67 29.92 -169.99 -5.09 19.58 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 7 C -0.38 -10.86 9.68 -14.93 -0.14 -11.00 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 9 N -0.58 -14.78 5.28 -10.97 -0.06 -14.84 16 10 C 0.44 10.78 7.43 -10.99 -0.08 10.70 16 11 O -0.57 -15.85 14.00 5.55 0.08 -15.78 16 12 C 0.03 0.62 5.39 -4.98 -0.03 0.60 16 13 N -0.49 -8.22 5.18 -231.54 -1.20 -9.42 16 14 C 0.03 0.39 6.02 -2.23 -0.01 0.38 16 15 C -0.09 -1.00 3.63 -88.32 -0.32 -1.32 16 16 H 0.09 0.89 7.72 -51.93 -0.40 0.49 16 17 C -0.12 -0.97 6.55 -23.79 -0.16 -1.13 16 18 C -0.12 -1.07 6.97 -23.43 -0.16 -1.24 16 19 C -0.12 -1.43 5.65 -25.15 -0.14 -1.57 16 20 C 0.17 2.25 0.90 -129.51 -0.12 2.13 16 21 N -0.68 -8.91 5.24 -45.90 -0.24 -9.15 16 22 C 0.51 7.34 6.92 -11.59 -0.08 7.26 16 23 O -0.51 -8.43 14.00 5.50 0.08 -8.35 16 24 C 0.52 6.75 8.16 -11.58 -0.09 6.65 16 25 N -0.82 -7.75 8.87 30.91 0.27 -7.47 16 26 O -0.53 -7.89 17.31 5.50 0.10 -7.79 16 27 C 0.04 0.65 4.44 -2.23 -0.01 0.64 16 28 H 0.26 7.09 6.77 -40.82 -0.28 6.82 16 29 H 0.37 8.87 6.73 -40.82 -0.27 8.59 16 30 H 0.05 0.78 7.98 -51.93 -0.41 0.36 16 31 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.05 0.53 6.97 -51.93 -0.36 0.17 16 33 H 0.08 0.92 8.14 -51.92 -0.42 0.49 16 34 H 0.07 0.61 7.18 -51.93 -0.37 0.23 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.97 6.67 -51.93 -0.35 0.62 16 39 H 0.08 0.96 7.25 -51.93 -0.38 0.58 16 40 H 0.41 4.85 7.78 -40.82 -0.32 4.53 16 41 H 0.42 3.52 8.30 -40.82 -0.34 3.18 16 42 H 0.41 2.87 8.93 -40.82 -0.36 2.50 16 43 H 0.11 2.51 5.17 -51.93 -0.27 2.24 16 44 H 0.05 0.83 7.07 -51.93 -0.37 0.47 16 LS Contribution 354.44 15.07 5.34 5.34 Total: -1.00 -35.93 354.44 -7.17 -43.10 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -5.77 Total: 17.83 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: -1.45 Total: 11.74 kcal Atomic # 7 Polarization: -65.21 SS G_CDS: -0.47 Total: -65.67 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: 0.25 Total: -31.92 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -5.09 Total: 19.58 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.93 -7.17 -43.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111860206.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.988 kcal (2) G-P(sol) polarization free energy of solvation -35.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds