Wall clock time and date at job start Tue Mar 31 2020 05:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86802 * 119.99691 * 2 1 4 4 H 1.48498 * 109.47243 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.46994 * 120.00112 * 3 2 1 6 6 H 1.48500 * 109.46759 * 240.00051 * 3 2 1 7 7 C 1.38944 * 120.00172 * 180.27576 * 2 1 3 8 8 H 1.07998 * 120.00502 * 179.72144 * 7 2 1 9 9 N 1.37105 * 119.99844 * 359.72427 * 7 2 1 10 10 C 1.34780 * 120.00018 * 179.97438 * 9 7 2 11 11 O 1.21287 * 119.99797 * 0.02562 * 10 9 7 12 12 C 1.50694 * 119.99879 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.46924 * 186.04202 * 12 10 9 14 14 C 1.48536 * 111.00249 * 176.47696 * 13 12 10 15 15 C 1.54319 * 104.67469 * 200.80522 * 14 13 12 16 16 H 1.08996 * 111.82194 * 262.42446 * 15 14 13 17 17 C 1.54160 * 108.86398 * 138.40361 * 15 14 13 18 18 C 1.57292 * 103.16422 * 222.93761 * 17 15 14 19 19 C 1.54842 * 102.82098 * 38.42760 * 18 17 15 20 20 C 1.54167 * 104.32187 * 321.56235 * 19 18 17 21 21 N 1.46507 * 111.79216 * 261.29199 * 20 19 18 22 22 C 1.34776 * 119.99871 * 299.22846 * 21 20 19 23 23 O 1.21349 * 120.00139 * 359.97438 * 22 21 20 24 24 C 1.49449 * 119.99532 * 180.02562 * 22 21 20 25 25 N 1.34786 * 119.99545 * 179.97438 * 24 22 21 26 26 O 1.21349 * 120.00329 * 359.97438 * 24 22 21 27 27 C 1.48534 * 111.00166 * 61.07016 * 13 12 10 28 28 H 0.97001 * 119.99735 * 180.02562 * 1 2 3 29 29 H 0.96998 * 119.99970 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.47611 * 306.03651 * 12 10 9 31 31 H 1.08997 * 109.47051 * 66.04353 * 12 10 9 32 32 H 1.08999 * 110.39475 * 319.60628 * 14 13 12 33 33 H 1.09009 * 110.39411 * 81.88999 * 14 13 12 34 34 H 1.08999 * 110.46503 * 342.38533 * 17 15 14 35 35 H 1.09004 * 110.45930 * 104.96332 * 17 15 14 36 36 H 1.09006 * 110.94086 * 279.98617 * 18 17 15 37 37 H 1.09002 * 110.65848 * 156.74303 * 18 17 15 38 38 H 1.08997 * 110.46609 * 202.84686 * 19 18 17 39 39 H 1.09006 * 110.45876 * 80.26852 * 19 18 17 40 40 H 0.96992 * 119.99627 * 119.22881 * 21 20 19 41 41 H 0.96992 * 120.00489 * 359.97438 * 25 24 22 42 42 H 0.97002 * 119.99490 * 179.97438 * 25 24 22 43 43 H 1.08997 * 110.39458 * 277.99091 * 27 13 12 44 44 H 1.08993 * 110.39370 * 40.40068 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2830 2.7465 0.0006 5 1 3.1018 1.6965 1.2125 6 1 3.1018 1.6964 -1.2125 7 6 2.0089 -1.2033 -0.0058 8 1 3.0889 -1.2033 -0.0103 9 7 1.3234 -2.3906 -0.0058 10 6 1.9973 -3.5579 -0.0119 11 8 3.2101 -3.5578 -0.0170 12 6 1.2438 -4.8629 -0.0113 13 7 2.1925 -5.9759 0.1271 14 6 1.4789 -7.2756 0.2165 15 6 2.4929 -8.2337 0.8763 16 1 3.0191 -8.8382 0.1375 17 6 1.7538 -9.1073 1.9093 18 6 2.7359 -9.1174 3.1379 19 6 3.2830 -7.6690 3.1524 20 6 3.4586 -7.3127 1.6628 21 7 4.8471 -7.4757 1.2246 22 6 5.8255 -6.7506 1.8021 23 8 5.5563 -5.9625 2.6847 24 6 7.2417 -6.9165 1.3547 25 7 8.2201 -6.1910 1.9319 26 8 7.5109 -7.7043 0.4718 27 6 2.9405 -5.8818 1.4069 28 1 -0.4850 -0.8401 0.0004 29 1 0.3534 -2.3906 -0.0014 30 1 0.5426 -4.8773 0.8231 31 1 0.6961 -4.9666 -0.9480 32 1 0.5886 -7.1782 0.8377 33 1 1.2101 -7.6306 -0.7785 34 1 0.7926 -8.6624 2.1665 35 1 1.6163 -10.1180 1.5248 36 1 3.5432 -9.8338 2.9855 37 1 2.1964 -9.3359 4.0596 38 1 4.2417 -7.6289 3.6695 39 1 2.5666 -6.9957 3.6233 40 1 5.0621 -8.1053 0.5189 41 1 8.0050 -5.5611 2.6374 42 1 9.1394 -6.2989 1.6418 43 1 3.7749 -5.1875 1.3090 44 1 2.2767 -5.5684 2.2126 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111860206.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:50 Heat of formation + Delta-G solvation = -126.864317 kcal Electronic energy + Delta-G solvation = -28656.609553 eV Core-core repulsion = 24607.454798 eV Total energy + Delta-G solvation = -4049.154754 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.22353 -40.98859 -40.10393 -39.12656 -36.81331 -36.07105 -35.28695 -34.34826 -33.18960 -31.39345 -30.68558 -27.85677 -26.69723 -26.32682 -25.46789 -23.00494 -22.15633 -21.28715 -20.97093 -20.52366 -19.96488 -19.58189 -18.42968 -17.95854 -17.44217 -17.08081 -16.99518 -16.86539 -16.49233 -16.14725 -15.65516 -15.48467 -15.36124 -15.31908 -14.89638 -14.74691 -14.19282 -14.02838 -13.46961 -13.37738 -13.17967 -13.11217 -12.88311 -12.62284 -12.52690 -12.35335 -12.03383 -11.93878 -11.92748 -11.82753 -11.63308 -11.55998 -11.50494 -10.96513 -10.77823 -10.38898 -10.23549 -10.11710 -9.44679 -8.94961 -6.08394 0.29878 1.41010 1.50072 1.51758 1.80289 1.98044 2.10904 2.37421 2.71634 2.80149 3.07610 3.14761 3.30732 3.42412 3.54183 3.76022 4.05660 4.08501 4.18170 4.25478 4.28952 4.30028 4.42774 4.43439 4.53387 4.66431 4.73360 4.88715 4.90033 5.01160 5.11496 5.15056 5.20932 5.40023 5.42430 5.49149 5.55617 5.74853 5.85617 5.92193 5.95863 6.26314 6.55776 6.73375 6.78650 6.96657 7.41674 7.91453 8.52921 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.012228 B = 0.003809 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.282293 B = 7349.873898 C = 8951.534919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.040 4.040 3 Si 1.132 2.868 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.409 4.409 8 H 0.069 0.931 9 N -0.587 5.587 10 C 0.441 3.559 11 O -0.610 6.610 12 C 0.046 3.954 13 N -0.507 5.507 14 C 0.032 3.968 15 C -0.088 4.088 16 H 0.109 0.891 17 C -0.108 4.108 18 C -0.115 4.115 19 C -0.122 4.122 20 C 0.170 3.830 21 N -0.669 5.669 22 C 0.500 3.500 23 O -0.538 6.538 24 C 0.517 3.483 25 N -0.801 5.801 26 O -0.548 6.548 27 C 0.041 3.959 28 H 0.259 0.741 29 H 0.384 0.616 30 H 0.069 0.931 31 H 0.116 0.884 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.418 0.582 41 H 0.421 0.579 42 H 0.423 0.577 43 H 0.060 0.940 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.646 -21.167 5.852 22.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.239 4.239 3 Si 0.952 3.048 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.538 4.538 8 H 0.087 0.913 9 N -0.226 5.226 10 C 0.229 3.771 11 O -0.495 6.495 12 C -0.085 4.085 13 N -0.231 5.231 14 C -0.095 4.095 15 C -0.107 4.107 16 H 0.127 0.873 17 C -0.146 4.146 18 C -0.152 4.152 19 C -0.161 4.161 20 C 0.084 3.916 21 N -0.321 5.321 22 C 0.280 3.720 23 O -0.415 6.415 24 C 0.295 3.705 25 N -0.368 5.368 26 O -0.426 6.426 27 C -0.088 4.088 28 H 0.070 0.930 29 H 0.218 0.782 30 H 0.087 0.913 31 H 0.134 0.866 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.256 0.744 41 H 0.253 0.747 42 H 0.258 0.742 43 H 0.079 0.921 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 5.414 -19.443 5.426 20.899 hybrid contribution -0.314 -0.996 0.452 1.137 sum 5.100 -20.438 5.878 21.870 Atomic orbital electron populations 1.70971 1.06908 1.29451 1.48162 1.27794 0.96698 1.05194 0.94175 0.82654 0.73861 0.70451 0.77841 1.19422 1.19987 1.19892 1.20473 0.93723 0.85716 1.53892 0.91290 1.41979 1.08532 1.05439 1.66691 1.20797 0.88369 0.85890 0.82087 1.90498 1.15809 1.87717 1.55478 1.21973 0.93902 0.88711 1.03940 1.65180 1.22653 1.01627 1.33677 1.23538 0.95646 0.87799 1.02502 1.22786 0.94607 0.95496 0.97827 0.87272 1.22920 0.97731 1.00435 0.93496 1.22926 0.98943 0.94154 0.99220 1.22661 1.01575 0.98798 0.93096 1.21720 0.80056 0.94115 0.95753 1.45615 1.05863 1.41603 1.39051 1.20299 0.87235 0.81432 0.82998 1.90779 1.83971 1.35592 1.31153 1.20031 0.87070 0.81221 0.82181 1.43403 1.10227 1.42555 1.40618 1.90779 1.83975 1.37132 1.30752 1.23375 0.98265 0.97321 0.89829 0.93005 0.78172 0.91265 0.86585 0.91762 0.88025 0.90209 0.88384 0.90505 0.89789 0.92012 0.91336 0.74390 0.74717 0.74200 0.92120 0.94622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.92 13.68 21.66 0.30 -51.62 16 2 C -0.04 -2.24 5.50 84.92 0.47 -1.78 16 3 Si 1.13 49.78 29.92 68.60 2.05 51.83 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 7 C -0.41 -24.11 9.68 84.04 0.81 -23.29 16 8 H 0.07 4.40 7.16 -2.91 -0.02 4.38 16 9 N -0.59 -30.86 5.28 -306.99 -1.62 -32.48 16 10 C 0.44 21.90 7.43 87.65 0.65 22.56 16 11 O -0.61 -35.59 14.00 -3.05 -0.04 -35.63 16 12 C 0.05 1.64 5.39 85.56 0.46 2.10 16 13 N -0.51 -16.74 5.18 -886.45 -4.59 -21.33 16 14 C 0.03 0.69 6.02 86.43 0.52 1.21 16 15 C -0.09 -1.60 3.63 -9.30 -0.03 -1.63 16 16 H 0.11 1.68 7.72 -2.39 -0.02 1.66 16 17 C -0.11 -1.34 6.55 32.50 0.21 -1.13 16 18 C -0.11 -1.65 6.97 32.74 0.23 -1.42 16 19 C -0.12 -2.77 5.65 31.62 0.18 -2.59 16 20 C 0.17 4.36 0.90 5.09 0.00 4.37 16 21 N -0.67 -17.67 5.24 -417.50 -2.19 -19.86 16 22 C 0.50 14.93 6.92 87.27 0.60 15.54 16 23 O -0.54 -18.80 14.00 -3.24 -0.05 -18.85 16 24 C 0.52 13.62 8.16 87.27 0.71 14.33 16 25 N -0.80 -14.97 8.87 -174.49 -1.55 -16.52 16 26 O -0.55 -16.35 17.31 -3.24 -0.06 -16.41 16 27 C 0.04 1.46 4.44 86.43 0.38 1.84 16 28 H 0.26 14.19 6.77 -92.71 -0.63 13.57 16 29 H 0.38 18.44 6.73 -92.71 -0.62 17.82 16 30 H 0.07 2.16 7.98 -2.39 -0.02 2.14 16 31 H 0.12 3.55 8.14 -2.39 -0.02 3.53 16 32 H 0.06 1.19 6.97 -2.39 -0.02 1.17 16 33 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.08 0.95 7.18 -2.39 -0.02 0.93 16 35 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.06 1.58 6.67 -2.39 -0.02 1.56 16 39 H 0.07 1.67 7.25 -2.38 -0.02 1.65 16 40 H 0.42 9.60 7.78 -92.71 -0.72 8.88 16 41 H 0.42 7.20 8.30 -92.71 -0.77 6.43 16 42 H 0.42 5.61 8.93 -92.71 -0.83 4.78 16 43 H 0.06 2.84 5.17 -2.39 -0.01 2.82 16 44 H 0.04 1.30 7.07 -2.39 -0.02 1.29 16 Total: -1.00 -81.65 354.44 -4.25 -85.90 By element: Atomic # 1 Polarization: 46.58 SS G_CDS: -1.70 Total: 44.88 kcal Atomic # 6 Polarization: 24.89 SS G_CDS: 5.20 Total: 30.09 kcal Atomic # 7 Polarization: -132.15 SS G_CDS: -9.66 Total: -141.81 kcal Atomic # 8 Polarization: -70.74 SS G_CDS: -0.14 Total: -70.89 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 2.05 Total: 51.83 kcal Total: -81.65 -4.25 -85.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111860206.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.969 kcal (2) G-P(sol) polarization free energy of solvation -81.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds