Wall clock time and date at job start Tue Mar 31 2020 05:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42907 * 109.46742 * 2 1 4 4 C 1.42901 * 113.99723 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.47491 * 30.00177 * 4 3 2 6 6 C 1.53002 * 109.46954 * 270.00211 * 4 3 2 7 7 C 1.50700 * 109.47149 * 150.00457 * 4 3 2 8 8 O 1.21282 * 119.99657 * 4.99601 * 7 4 3 9 9 N 1.34768 * 120.00178 * 185.00110 * 7 4 3 10 10 C 1.48151 * 127.83924 * 179.97438 * 9 7 4 11 11 C 1.54385 * 104.61530 * 219.60348 * 10 9 7 12 12 H 1.09002 * 110.34252 * 95.00396 * 11 10 9 13 13 C 1.53003 * 110.34039 * 217.26051 * 11 10 9 14 14 F 1.39897 * 109.47115 * 175.53921 * 13 11 10 15 15 F 1.39899 * 109.47422 * 295.53851 * 13 11 10 16 16 F 1.39906 * 109.47010 * 55.53974 * 13 11 10 17 17 C 1.54284 * 104.96542 * 336.13303 * 11 10 9 18 18 H 1.08999 * 110.43169 * 241.09124 * 17 11 10 19 19 N 1.46499 * 110.34480 * 118.87078 * 17 11 10 20 20 C 1.36935 * 119.99938 * 158.01233 * 19 17 11 21 21 H 1.07999 * 120.00083 * 0.02562 * 20 19 17 22 22 C 1.38812 * 119.99632 * 179.97438 * 20 19 17 23 23 N 1.31624 * 119.99535 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00187 * 0.27829 * 22 20 19 25 25 H 1.48501 * 109.46922 * 269.71949 * 24 22 20 26 26 H 1.48496 * 109.47354 * 29.72145 * 24 22 20 27 27 H 1.48501 * 109.47428 * 149.72253 * 24 22 20 28 28 C 1.48149 * 127.83769 * 359.96713 * 9 7 4 29 29 H 1.09003 * 109.47466 * 60.00088 * 1 2 3 30 30 H 1.09006 * 109.46578 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47162 * 299.99344 * 1 2 3 32 32 H 1.08997 * 109.47162 * 240.00656 * 2 1 3 33 33 H 1.08997 * 109.47345 * 120.00326 * 2 1 3 34 34 H 1.09001 * 109.47412 * 300.00096 * 6 4 3 35 35 H 1.08995 * 109.47299 * 60.00070 * 6 4 3 36 36 H 1.09002 * 109.47039 * 180.02562 * 6 4 3 37 37 H 1.08992 * 110.40754 * 338.38993 * 10 9 7 38 38 H 1.08997 * 110.40321 * 100.69983 * 10 9 7 39 39 H 0.97004 * 119.99469 * 338.01302 * 19 17 11 40 40 H 0.97005 * 119.99717 * 180.02562 * 23 22 20 41 41 H 1.09002 * 110.40489 * 21.61617 * 28 9 7 42 42 H 1.08996 * 110.50870 * 259.22952 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8631 0.6019 -0.5147 6 6 3.9398 1.5002 1.4417 7 6 3.8341 2.7267 -0.7109 8 8 2.9854 3.5051 -1.0913 9 7 5.1377 2.9942 -0.9234 10 6 5.7249 4.1757 -1.5974 11 6 6.8921 3.6074 -2.4330 12 1 6.5672 3.4137 -3.4553 13 6 8.0745 4.5784 -2.4244 14 9 9.1558 4.0025 -3.0999 15 9 7.7060 5.7676 -3.0624 16 9 8.4429 4.8528 -1.1029 17 6 7.2771 2.2872 -1.7335 18 1 8.3086 2.3287 -1.3837 19 7 7.0945 1.1554 -2.6455 20 6 7.7708 -0.0152 -2.4280 21 1 8.4385 -0.1043 -1.5838 22 6 7.5974 -1.0878 -3.2920 23 7 8.2479 -2.2128 -3.0831 24 14 6.4474 -0.9316 -4.7557 25 1 5.0812 -1.3578 -4.3595 26 1 6.4129 0.4819 -5.2095 27 1 6.9339 -1.7948 -5.8618 28 6 6.3088 2.1737 -0.5358 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.5075 2.3586 1.9560 35 1 3.6481 0.5843 1.9555 36 1 5.0264 1.5868 1.4413 37 1 4.9878 4.6484 -2.2463 38 1 6.0945 4.8889 -0.8606 39 1 6.4945 1.2354 -3.4036 40 1 8.1270 -2.9622 -3.6871 41 1 6.0121 1.1359 -0.3839 42 1 6.7721 2.5719 0.3669 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112051177.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:07 Heat of formation + Delta-G solvation = -231.758032 kcal Electronic energy + Delta-G solvation = -29552.139907 eV Core-core repulsion = 24924.287129 eV Total energy + Delta-G solvation = -4627.852778 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.13141 -48.60501 -48.58525 -41.42263 -39.56464 -38.43570 -35.95603 -34.14774 -33.26864 -32.40406 -30.94315 -29.48988 -27.27055 -26.00436 -24.95155 -23.73633 -23.27470 -21.91662 -20.80419 -19.84240 -19.54753 -19.22563 -18.47059 -18.38474 -17.70305 -17.02444 -16.81381 -16.47708 -16.28677 -15.84878 -15.48997 -15.46915 -15.11852 -14.99651 -14.97438 -14.80576 -14.71183 -14.66817 -14.36172 -14.13862 -13.95633 -13.57779 -13.46811 -13.19108 -13.15481 -12.98181 -12.93583 -12.60312 -12.52035 -12.40168 -12.30581 -12.07940 -12.04510 -11.81394 -11.18269 -11.02961 -10.55420 -10.03278 -9.34429 -8.03011 -5.38598 1.36503 1.36798 1.37728 1.44500 1.47214 1.77880 2.45452 2.65018 2.75867 2.81121 2.92051 3.27633 3.37682 3.51937 3.63774 3.68159 3.87788 3.91047 3.98342 4.14597 4.15902 4.29752 4.40778 4.44189 4.49687 4.56330 4.66211 4.69995 4.76749 4.84264 4.87684 4.98668 5.08834 5.16584 5.23263 5.76152 6.04982 6.18876 6.34342 6.98016 7.02295 7.75052 7.91911 9.17016 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.008833 B = 0.005837 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3169.013201 B = 4795.990552 C = 6991.883155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.045 3.955 3 O -0.385 6.385 4 C 0.073 3.927 5 H 0.091 0.909 6 C -0.163 4.163 7 C 0.537 3.463 8 O -0.568 6.568 9 N -0.611 5.611 10 C 0.119 3.881 11 C -0.160 4.160 12 H 0.125 0.875 13 C 0.473 3.527 14 F -0.184 7.184 15 F -0.180 7.180 16 F -0.175 7.175 17 C 0.175 3.825 18 H 0.087 0.913 19 N -0.740 5.740 20 C -0.225 4.225 21 H 0.075 0.925 22 C -0.047 4.047 23 N -0.973 5.973 24 Si 0.934 3.066 25 H -0.282 1.282 26 H -0.258 1.258 27 H -0.300 1.300 28 C 0.078 3.922 29 H 0.051 0.949 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.364 0.636 40 H 0.257 0.743 41 H 0.091 0.909 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.183 10.522 7.781 14.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.031 4.031 3 O -0.304 6.304 4 C 0.012 3.988 5 H 0.109 0.891 6 C -0.220 4.220 7 C 0.327 3.673 8 O -0.447 6.447 9 N -0.345 5.345 10 C -0.003 4.003 11 C -0.182 4.182 12 H 0.143 0.857 13 C 0.418 3.582 14 F -0.166 7.166 15 F -0.162 7.162 16 F -0.156 7.156 17 C 0.065 3.935 18 H 0.105 0.895 19 N -0.382 5.382 20 C -0.356 4.356 21 H 0.093 0.907 22 C -0.239 4.239 23 N -0.623 5.623 24 Si 0.763 3.237 25 H -0.208 1.208 26 H -0.182 1.182 27 H -0.227 1.227 28 C -0.046 4.046 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.123 0.877 39 H 0.198 0.802 40 H 0.066 0.934 41 H 0.109 0.891 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.705 10.920 7.692 15.420 hybrid contribution -0.054 -0.478 -1.399 1.479 sum -7.759 10.442 6.293 14.451 Atomic orbital electron populations 1.21743 0.92281 1.03534 1.02742 1.22838 0.96868 0.82338 1.01086 1.87973 1.18945 1.28336 1.95196 1.21881 0.83414 0.95172 0.98310 0.89118 1.22235 1.02728 1.04267 0.92784 1.20418 0.80358 0.87766 0.78771 1.90672 1.50240 1.50771 1.53007 1.48776 1.04739 1.23378 1.57606 1.22241 0.93339 0.88489 0.96274 1.23737 0.93355 0.95641 1.05446 0.85654 1.20037 0.84161 0.80346 0.73663 1.93226 1.58340 1.84441 1.80563 1.93194 1.91409 1.49367 1.82210 1.93182 1.92618 1.94261 1.35571 1.21229 0.98798 0.83863 0.89583 0.89519 1.42779 1.53247 1.11331 1.30860 1.18973 1.18749 0.88791 1.09081 0.90677 1.25255 1.01481 0.95854 1.01343 1.69834 1.47362 1.04410 1.40694 0.85741 0.79312 0.78018 0.80639 1.20819 1.18247 1.22725 1.23564 0.85278 0.97007 0.98796 0.92962 0.88733 0.91551 0.93619 0.91177 0.91534 0.89560 0.89406 0.88783 0.87703 0.80213 0.93368 0.89094 0.87383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 10.28 71.98 0.74 -2.00 16 2 C 0.04 1.02 6.47 71.98 0.47 1.48 16 3 O -0.39 -11.41 9.53 -129.99 -1.24 -12.64 16 4 C 0.07 2.00 2.43 29.85 0.07 2.07 16 5 H 0.09 2.49 7.37 -2.39 -0.02 2.47 16 6 C -0.16 -3.34 9.35 71.98 0.67 -2.67 16 7 C 0.54 17.00 7.29 87.66 0.64 17.64 16 8 O -0.57 -22.16 16.77 15.95 0.27 -21.89 16 9 N -0.61 -16.49 3.31 -807.89 -2.68 -19.17 16 10 C 0.12 2.83 6.38 86.53 0.55 3.39 16 11 C -0.16 -4.08 2.84 -9.89 -0.03 -4.11 16 12 H 0.13 3.28 7.64 -2.39 -0.02 3.26 16 13 C 0.47 11.59 2.53 71.98 0.18 11.78 16 14 F -0.18 -5.39 16.93 44.97 0.76 -4.62 16 15 F -0.18 -4.25 17.17 44.97 0.77 -3.48 16 16 F -0.17 -4.01 16.05 44.97 0.72 -3.28 16 17 C 0.18 5.28 2.99 45.91 0.14 5.41 16 18 H 0.09 2.66 7.37 -2.39 -0.02 2.65 16 19 N -0.74 -29.25 4.94 -318.59 -1.57 -30.83 16 20 C -0.23 -11.12 10.45 84.03 0.88 -10.24 16 21 H 0.08 3.99 8.06 -2.91 -0.02 3.96 16 22 C -0.05 -2.51 5.50 84.86 0.47 -2.04 16 23 N -0.97 -57.74 13.97 21.65 0.30 -57.44 16 24 Si 0.93 42.58 27.74 68.60 1.90 44.49 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 26 H -0.26 -10.73 6.52 99.48 0.65 -10.08 16 27 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 28 C 0.08 1.99 5.10 86.55 0.44 2.43 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.05 1.08 8.08 -2.39 -0.02 1.06 16 33 H 0.07 1.30 7.87 -2.39 -0.02 1.28 16 34 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.09 1.49 7.87 -2.39 -0.02 1.47 16 36 H 0.09 1.60 5.98 -2.39 -0.01 1.59 16 37 H 0.09 2.31 7.88 -2.39 -0.02 2.29 16 38 H 0.11 2.07 7.22 -2.39 -0.02 2.05 16 39 H 0.36 14.54 5.36 -92.71 -0.50 14.04 16 40 H 0.26 14.78 8.31 -92.70 -0.77 14.00 16 41 H 0.09 2.54 6.63 -2.39 -0.02 2.52 16 42 H 0.11 2.11 8.07 -2.39 -0.02 2.09 16 Total: -1.00 -66.60 355.02 4.96 -61.65 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.50 Total: 24.08 kcal Atomic # 6 Polarization: 17.93 SS G_CDS: 5.22 Total: 23.15 kcal Atomic # 7 Polarization: -103.49 SS G_CDS: -3.95 Total: -107.44 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -0.97 Total: -34.54 kcal Atomic # 9 Polarization: -13.64 SS G_CDS: 2.26 Total: -11.39 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.90 Total: 44.49 kcal Total: -66.60 4.96 -61.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112051177.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.113 kcal (2) G-P(sol) polarization free energy of solvation -66.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds