Wall clock time and date at job start Tue Mar 31 2020 05:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99653 * 2 1 4 4 H 1.09000 * 109.47105 * 329.99352 * 3 2 1 5 5 C 1.52997 * 109.47485 * 90.00108 * 3 2 1 6 6 C 1.53002 * 109.46748 * 209.99565 * 3 2 1 7 7 C 1.50703 * 109.46941 * 65.00154 * 6 3 2 8 8 O 1.21279 * 120.00054 * 0.02562 * 7 6 3 9 9 N 1.34779 * 119.99951 * 179.97438 * 7 6 3 10 10 C 1.48142 * 127.83722 * 179.97438 * 9 7 6 11 11 C 1.54397 * 104.61412 * 219.60489 * 10 9 7 12 12 H 1.09002 * 110.34226 * 95.00254 * 11 10 9 13 13 C 1.53001 * 110.34022 * 217.26220 * 11 10 9 14 14 F 1.39897 * 109.47041 * 175.53990 * 13 11 10 15 15 F 1.39907 * 109.46916 * 295.53260 * 13 11 10 16 16 F 1.39899 * 109.47665 * 55.53160 * 13 11 10 17 17 C 1.54287 * 104.95976 * 336.12786 * 11 10 9 18 18 H 1.08991 * 110.43298 * 241.08483 * 17 11 10 19 19 N 1.46499 * 110.34031 * 118.87340 * 17 11 10 20 20 C 1.36931 * 120.00122 * 158.00987 * 19 17 11 21 21 H 1.08002 * 120.00098 * 0.02562 * 20 19 17 22 22 C 1.38812 * 120.00429 * 180.02562 * 20 19 17 23 23 N 1.31624 * 119.99535 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00187 * 180.27849 * 22 20 19 25 25 H 1.48501 * 109.46922 * 269.71949 * 24 22 20 26 26 H 1.48496 * 109.47354 * 29.72145 * 24 22 20 27 27 H 1.48501 * 109.47428 * 149.72253 * 24 22 20 28 28 C 1.48148 * 127.83782 * 359.97237 * 9 7 6 29 29 H 1.09007 * 109.47552 * 300.00417 * 1 2 3 30 30 H 1.09004 * 109.47223 * 60.00410 * 1 2 3 31 31 H 1.08997 * 109.46920 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47445 * 179.97438 * 5 3 2 33 33 H 1.09005 * 109.47286 * 299.99730 * 5 3 2 34 34 H 1.09000 * 109.47566 * 59.99526 * 5 3 2 35 35 H 1.08997 * 109.47766 * 305.00012 * 6 3 2 36 36 H 1.08997 * 109.47074 * 184.99639 * 6 3 2 37 37 H 1.08999 * 110.41048 * 338.38341 * 10 9 7 38 38 H 1.08994 * 110.41171 * 100.70295 * 10 9 7 39 39 H 0.97001 * 119.99790 * 338.00504 * 19 17 11 40 40 H 0.97005 * 119.99717 * 180.02562 * 23 22 20 41 41 H 1.08999 * 110.40547 * 21.60929 * 28 9 7 42 42 H 1.09000 * 110.50546 * 259.23127 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 -0.5139 5 6 2.2176 1.7715 1.4424 6 6 3.3589 1.2633 -0.7212 7 6 3.1416 0.9236 -2.1733 8 8 2.0186 0.7344 -2.5903 9 7 4.1952 0.8310 -3.0086 10 6 4.1829 0.5099 -4.4548 11 6 5.4076 -0.4074 -4.6607 12 1 5.1091 -1.4546 -4.6119 13 6 6.0781 -0.1061 -6.0025 14 9 7.2412 -0.8738 -6.1254 15 9 5.1991 -0.4215 -7.0443 16 9 6.4070 1.2522 -6.0650 17 6 6.3608 -0.0664 -3.4963 18 1 7.3074 0.3150 -3.8788 19 7 6.5889 -1.2489 -2.6621 20 6 7.7046 -1.3243 -1.8718 21 1 8.4162 -0.5119 -1.8631 22 6 7.9211 -2.4449 -1.0817 23 7 7.0536 -3.4348 -1.0918 24 14 9.4391 -2.5443 0.0023 25 1 10.5478 -3.1783 -0.7555 26 1 9.8417 -1.1765 0.4170 27 1 9.1347 -3.3574 1.2071 28 6 5.6284 1.0273 -2.6890 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 2.6613 2.7670 1.4424 33 1 1.2568 1.8016 1.9563 34 1 2.8828 1.0777 1.9564 35 1 3.9931 0.5052 -0.2617 36 1 3.8426 2.2370 -0.6444 37 1 3.2655 -0.0159 -4.7196 38 1 4.2832 1.4194 -5.0470 39 1 5.9496 -1.9784 -2.6695 40 1 7.2047 -4.2178 -0.5394 41 1 5.8017 0.8920 -1.6214 42 1 5.9578 2.0174 -3.0042 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112065780.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:45 Heat of formation + Delta-G solvation = -218.959934 kcal Electronic energy + Delta-G solvation = -29343.534343 eV Core-core repulsion = 24716.236531 eV Total energy + Delta-G solvation = -4627.297811 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.145 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.90498 -47.41704 -47.31926 -39.89831 -38.28381 -37.11555 -34.04452 -32.87644 -31.91199 -30.61851 -28.18366 -27.60250 -26.49854 -25.27788 -24.22686 -22.40436 -21.35408 -20.33650 -19.22040 -18.31214 -18.00006 -17.78343 -16.91144 -16.76462 -16.54291 -15.72982 -15.29104 -14.89978 -14.83414 -14.42670 -14.26845 -14.19562 -13.81144 -13.78456 -13.61270 -13.48549 -13.36827 -13.32293 -13.28237 -12.81035 -12.58930 -12.19047 -11.96593 -11.90011 -11.76165 -11.61484 -11.41399 -11.23853 -10.93209 -10.87662 -10.86279 -10.61123 -10.19424 -9.86432 -9.62169 -9.45358 -9.18372 -8.50666 -7.16586 -5.90659 -3.23435 2.79548 2.96004 3.21247 3.36334 3.41581 3.43768 3.91098 3.99276 4.09820 4.22278 4.48761 4.67283 4.83541 4.90158 4.98730 5.16976 5.27062 5.33110 5.35635 5.39252 5.48732 5.50842 5.56476 5.58975 5.65097 5.72080 5.75350 5.83674 5.95581 5.97725 6.04792 6.13454 6.18715 6.26221 6.55802 7.36212 7.56429 7.79011 8.24183 8.42192 9.37086 9.86563 10.21878 11.30603 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.008043 B = 0.005619 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3480.366259 B = 4982.165217 C = 7636.568043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.372 6.372 3 C 0.103 3.897 4 H 0.064 0.936 5 C -0.175 4.175 6 C -0.137 4.137 7 C 0.545 3.455 8 O -0.545 6.545 9 N -0.615 5.615 10 C 0.118 3.882 11 C -0.165 4.165 12 H 0.128 0.872 13 C 0.464 3.536 14 F -0.173 7.173 15 F -0.187 7.187 16 F -0.184 7.184 17 C 0.179 3.821 18 H 0.075 0.925 19 N -0.710 5.710 20 C -0.254 4.254 21 H 0.074 0.926 22 C -0.003 4.003 23 N -0.924 5.924 24 Si 0.909 3.091 25 H -0.288 1.288 26 H -0.280 1.280 27 H -0.291 1.291 28 C 0.072 3.928 29 H 0.032 0.968 30 H 0.043 0.957 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.388 0.612 40 H 0.258 0.742 41 H 0.095 0.905 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.686 11.660 -2.625 14.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.291 6.291 3 C 0.044 3.956 4 H 0.082 0.918 5 C -0.233 4.233 6 C -0.176 4.176 7 C 0.335 3.665 8 O -0.422 6.422 9 N -0.348 5.348 10 C -0.006 4.006 11 C -0.186 4.186 12 H 0.146 0.854 13 C 0.409 3.591 14 F -0.154 7.154 15 F -0.169 7.169 16 F -0.166 7.166 17 C 0.066 3.934 18 H 0.093 0.907 19 N -0.350 5.350 20 C -0.385 4.385 21 H 0.092 0.908 22 C -0.200 4.200 23 N -0.570 5.570 24 Si 0.739 3.261 25 H -0.215 1.215 26 H -0.206 1.206 27 H -0.217 1.217 28 C -0.054 4.054 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.129 0.871 36 H 0.121 0.879 37 H 0.110 0.890 38 H 0.095 0.905 39 H 0.223 0.777 40 H 0.068 0.932 41 H 0.114 0.886 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.091 11.390 -2.667 14.224 hybrid contribution 0.690 -0.201 0.349 0.799 sum -7.401 11.189 -2.318 13.614 Atomic orbital electron populations 1.22670 0.81464 1.02334 0.99337 1.87967 1.19392 1.26837 1.94870 1.21769 0.93538 0.85743 0.94545 0.91757 1.22301 1.02455 1.01697 0.96817 1.21813 0.99020 1.04640 0.92144 1.20122 0.83039 0.76093 0.87283 1.90654 1.22844 1.50940 1.77804 1.48821 1.07573 1.69634 1.08817 1.22070 0.97272 0.97925 0.83313 1.23862 0.98243 1.04922 0.91609 0.85394 1.20313 0.77366 0.74052 0.87342 1.93233 1.50374 1.75354 1.96476 1.93170 1.69105 1.92729 1.61894 1.93148 1.93005 1.33529 1.96883 1.21034 0.94524 0.89593 0.88266 0.90680 1.42422 1.26623 1.16714 1.49261 1.19176 0.99186 1.02321 1.17804 0.90767 1.24779 0.98532 0.96514 1.00216 1.69668 1.36123 1.08050 1.43191 0.86185 0.82441 0.77506 0.79953 1.21534 1.20575 1.21698 1.23600 0.79197 0.99198 1.03421 0.94899 0.93805 0.90114 0.91595 0.92378 0.91340 0.87104 0.87947 0.89038 0.90517 0.77746 0.93198 0.88632 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.82 101.05 1.09 1.58 16 2 O -0.37 -5.94 9.58 -49.64 -0.48 -6.41 16 3 C 0.10 1.36 2.27 -26.73 -0.06 1.30 16 4 H 0.06 0.83 7.60 -51.93 -0.39 0.44 16 5 C -0.18 -1.85 9.53 37.16 0.35 -1.49 16 6 C -0.14 -1.89 4.39 -27.88 -0.12 -2.01 16 7 C 0.54 9.06 7.79 -10.98 -0.09 8.97 16 8 O -0.54 -10.43 15.69 -8.85 -0.14 -10.57 16 9 N -0.61 -9.63 3.32 -169.29 -0.56 -10.19 16 10 C 0.12 1.71 6.38 -2.41 -0.02 1.69 16 11 C -0.16 -2.54 2.84 -89.21 -0.25 -2.80 16 12 H 0.13 2.10 7.64 -51.93 -0.40 1.70 16 13 C 0.46 6.82 2.53 37.16 0.09 6.91 16 14 F -0.17 -2.89 16.93 2.25 0.04 -2.85 16 15 F -0.19 -2.66 17.17 2.25 0.04 -2.62 16 16 F -0.18 -2.57 16.05 2.25 0.04 -2.53 16 17 C 0.18 3.13 2.99 -66.52 -0.20 2.93 16 18 H 0.08 1.33 7.37 -51.93 -0.38 0.94 16 19 N -0.71 -16.04 5.14 -52.06 -0.27 -16.31 16 20 C -0.25 -6.43 9.97 -15.06 -0.15 -6.58 16 21 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 22 C 0.00 -0.08 5.50 -17.43 -0.10 -0.18 16 23 N -0.92 -26.54 13.06 55.49 0.72 -25.81 16 24 Si 0.91 21.19 29.55 -169.99 -5.02 16.17 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 C 0.07 1.10 6.63 -2.39 -0.02 1.08 16 29 H 0.03 0.34 7.87 -51.93 -0.41 -0.07 16 30 H 0.04 0.56 8.09 -51.93 -0.42 0.14 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.56 7.87 -51.93 -0.41 0.15 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.11 1.70 7.95 -51.93 -0.41 1.29 16 36 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.09 1.36 7.88 -51.93 -0.41 0.95 16 38 H 0.08 0.99 7.22 -51.93 -0.37 0.61 16 39 H 0.39 9.64 7.50 -40.82 -0.31 9.33 16 40 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.10 1.57 7.22 -51.93 -0.37 1.19 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 360.49 15.07 5.43 5.43 Total: -1.00 -30.37 360.49 -5.60 -35.97 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -5.95 Total: 8.30 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 0.54 Total: 11.42 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.10 Total: -52.31 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.61 Total: -16.98 kcal Atomic # 9 Polarization: -8.12 SS G_CDS: 0.11 Total: -8.00 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.37 -5.60 -35.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112065780.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.988 kcal (2) G-P(sol) polarization free energy of solvation -30.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds