Wall clock time and date at job start Tue Mar 31 2020 05:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 120.00210 * 2 1 4 4 H 1.48502 * 109.47457 * 240.00618 * 3 2 1 5 5 H 1.48507 * 109.47005 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47106 * 120.00223 * 3 2 1 7 7 C 1.38956 * 119.99837 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99649 * 179.97438 * 7 2 1 9 9 N 1.37091 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34786 * 119.99837 * 180.28019 * 9 7 2 11 11 O 1.21286 * 119.99586 * 359.71628 * 10 9 7 12 12 C 1.50697 * 119.99681 * 179.72181 * 10 9 7 13 13 N 1.46906 * 109.46864 * 179.97438 * 12 10 9 14 14 C 1.46892 * 111.00010 * 294.30299 * 13 12 10 15 15 C 1.53238 * 109.33953 * 172.74416 * 14 13 12 16 16 N 1.47086 * 108.52150 * 53.83005 * 15 14 13 17 17 C 1.34777 * 120.88066 * 128.79427 * 16 15 14 18 18 O 1.21287 * 120.00240 * 354.99556 * 17 16 15 19 19 C 1.50697 * 119.99789 * 175.00370 * 17 16 15 20 20 H 1.08994 * 110.43870 * 39.28818 * 19 17 16 21 21 C 1.54629 * 110.48801 * 161.97833 * 19 17 16 22 22 C 1.54470 * 101.76779 * 143.47304 * 21 19 17 23 23 N 1.46765 * 105.47645 * 334.57790 * 22 21 19 24 24 C 1.34424 * 111.29530 * 17.02201 * 23 22 21 25 25 O 1.21285 * 124.94146 * 179.63040 * 24 23 22 26 26 C 1.47077 * 118.23410 * 308.81818 * 16 15 14 27 27 C 1.46898 * 111.00113 * 169.99788 * 13 12 10 28 28 H 0.96995 * 120.00049 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00345 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.47700 * 299.99661 * 12 10 9 31 31 H 1.09001 * 109.47643 * 60.00102 * 12 10 9 32 32 H 1.09000 * 109.49372 * 292.70349 * 14 13 12 33 33 H 1.09001 * 109.49691 * 52.78401 * 14 13 12 34 34 H 1.09000 * 109.62937 * 294.12073 * 15 14 13 35 35 H 1.09001 * 109.63258 * 173.53899 * 15 14 13 36 36 H 1.09008 * 110.96459 * 261.58947 * 21 19 17 37 37 H 1.08998 * 110.96858 * 25.34638 * 21 19 17 38 38 H 1.09002 * 110.24341 * 215.58153 * 22 21 19 39 39 H 1.08996 * 110.25124 * 93.58116 * 22 21 19 40 40 H 0.96991 * 124.35323 * 196.99951 * 23 22 21 41 41 H 1.09000 * 109.62385 * 291.47067 * 26 16 15 42 42 H 1.09005 * 109.78565 * 170.99260 * 26 16 15 43 43 H 1.08999 * 109.49694 * 307.22091 * 27 13 12 44 44 H 1.09003 * 109.49224 * 67.26637 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6965 -1.2126 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5579 0.0046 11 8 3.2101 -3.5579 0.0041 12 6 1.2436 -4.8629 0.0110 13 7 2.1982 -5.9795 0.0152 14 6 2.9684 -6.0184 -1.2350 15 6 4.0707 -7.0766 -1.1193 16 7 3.4536 -8.3534 -0.7290 17 6 3.7031 -9.4825 -1.4213 18 8 4.3714 -9.4388 -2.4325 19 6 3.1515 -10.7994 -0.9391 20 1 2.1408 -10.6700 -0.5522 21 6 3.1679 -11.8433 -2.0797 22 6 3.5186 -13.1393 -1.3158 23 7 4.2450 -12.7031 -0.1174 24 6 4.0521 -11.3943 0.1210 25 8 4.5310 -10.7795 1.0504 26 6 2.5566 -8.3651 0.4365 27 6 1.5140 -7.2562 0.2596 28 1 -0.4850 0.8400 0.0004 29 1 0.3533 -2.3906 0.0002 30 1 0.6173 -4.9166 0.9014 31 1 0.6166 -4.9248 -0.8785 32 1 2.3059 -6.2723 -2.0626 33 1 3.4187 -5.0424 -1.4154 34 1 4.7925 -6.7721 -0.3615 35 1 4.5712 -7.1907 -2.0809 36 1 2.1881 -11.9214 -2.5511 37 1 3.9354 -11.6046 -2.8160 38 1 4.1530 -13.7789 -1.9294 39 1 2.6087 -13.6687 -1.0334 40 1 4.7934 -13.2844 0.4321 41 1 3.1329 -8.1844 1.3439 42 1 2.0558 -9.3308 0.5071 43 1 0.9094 -7.1778 1.1631 44 1 0.8713 -7.4926 -0.5885 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113193805.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:22 Heat of formation + Delta-G solvation = -80.674128 kcal Electronic energy + Delta-G solvation = -27827.109655 eV Core-core repulsion = 23779.957858 eV Total energy + Delta-G solvation = -4047.151797 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.30295 -39.61266 -38.53217 -37.31611 -36.63665 -34.53266 -33.74498 -32.21532 -31.24908 -30.88731 -29.10630 -28.04306 -25.71345 -23.97411 -23.80778 -22.57248 -22.00079 -20.59312 -19.24069 -18.81095 -17.94951 -17.75948 -17.71653 -16.61563 -16.14175 -15.92751 -15.22744 -15.10095 -14.82214 -14.77788 -14.54679 -14.17804 -14.08883 -13.91188 -13.69319 -13.58167 -13.56299 -13.07268 -12.77849 -12.49633 -12.24446 -12.01286 -11.66409 -11.52463 -11.47797 -11.24333 -11.11158 -10.95385 -10.84315 -10.43442 -10.28885 -10.20903 -9.96205 -9.56924 -9.46186 -8.84457 -8.36056 -7.98195 -7.87961 -6.41449 -3.82133 2.01367 2.40393 2.81749 3.04549 3.20827 3.26515 3.31007 3.85623 3.88789 3.90994 3.95526 4.22900 4.26154 4.50607 4.54896 4.80768 4.88168 4.98580 5.01890 5.11693 5.19739 5.25491 5.34754 5.36070 5.48063 5.64360 5.65916 5.70269 5.83132 5.89225 5.91726 6.15910 6.24580 6.25981 6.28904 6.51968 6.53077 7.13775 7.32359 7.36132 7.55572 7.79532 7.98120 8.06355 8.61771 9.18301 9.54356 10.05997 10.76202 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.037165 B = 0.002287 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.225241 B =12240.498358 C =12346.473475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.443 3.557 11 O -0.577 6.577 12 C 0.047 3.953 13 N -0.514 5.514 14 C 0.041 3.959 15 C 0.120 3.880 16 N -0.598 5.598 17 C 0.534 3.466 18 O -0.540 6.540 19 C -0.154 4.154 20 H 0.131 0.869 21 C -0.122 4.122 22 C 0.101 3.899 23 N -0.729 5.729 24 C 0.533 3.467 25 O -0.512 6.512 26 C 0.117 3.883 27 C 0.039 3.961 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.027 0.973 33 H 0.116 0.884 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.414 0.586 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.825 -26.570 -2.457 26.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.228 3.772 11 O -0.461 6.461 12 C -0.084 4.084 13 N -0.239 5.239 14 C -0.087 4.087 15 C -0.002 4.002 16 N -0.329 5.329 17 C 0.320 3.680 18 O -0.417 6.417 19 C -0.178 4.178 20 H 0.149 0.851 21 C -0.160 4.160 22 C -0.024 4.024 23 N -0.386 5.386 24 C 0.317 3.683 25 O -0.387 6.387 26 C -0.006 4.006 27 C -0.090 4.090 28 H 0.082 0.918 29 H 0.225 0.775 30 H 0.108 0.892 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.134 0.866 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.253 0.747 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.106 0.894 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.727 -25.866 -2.185 25.969 hybrid contribution -0.844 0.415 -0.277 0.981 sum -0.118 -25.452 -2.462 25.571 Atomic orbital electron populations 1.69600 1.05936 1.28261 1.50567 1.25261 0.95635 0.99729 0.97321 0.85918 0.78758 0.80454 0.79095 1.19910 1.21013 1.19878 1.19648 0.93341 0.82190 1.47636 0.87933 1.41865 1.09184 1.04591 1.64369 1.19716 0.88416 0.84518 0.84524 1.90487 1.13655 1.86836 1.55116 1.21849 0.93856 0.91122 1.01591 1.61490 1.25217 1.01349 1.35865 1.22652 0.95340 1.01587 0.89115 1.21809 0.95646 0.80640 1.02092 1.48104 1.46557 1.08519 1.29761 1.19640 0.80526 0.84486 0.83352 1.90684 1.40268 1.85982 1.24813 1.22177 1.02194 0.95263 0.98184 0.85128 1.22675 1.05138 0.91356 0.96798 1.22135 0.96987 0.97210 0.86020 1.46108 1.51591 1.10647 1.30267 1.20198 0.80570 0.82503 0.85054 1.90833 1.51184 1.64437 1.32198 1.21861 0.91496 0.98164 0.89115 1.22527 0.95241 0.89931 1.01318 0.91833 0.77504 0.89170 0.93450 0.95472 0.86581 0.90076 0.88883 0.88578 0.87773 0.89722 0.90628 0.74690 0.89621 0.90150 0.89360 0.94733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.44 13.05 55.50 0.72 -23.71 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 9 N -0.56 -14.11 5.29 -10.96 -0.06 -14.17 16 10 C 0.44 10.26 7.44 -10.98 -0.08 10.18 16 11 O -0.58 -15.24 13.91 5.55 0.08 -15.16 16 12 C 0.05 0.82 5.45 -4.97 -0.03 0.79 16 13 N -0.51 -8.42 4.37 -235.77 -1.03 -9.45 16 14 C 0.04 0.69 5.25 -3.71 -0.02 0.67 16 15 C 0.12 1.86 6.61 -3.60 -0.02 1.83 16 16 N -0.60 -8.19 3.01 -172.46 -0.52 -8.71 16 17 C 0.53 7.09 6.83 -10.99 -0.08 7.02 16 18 O -0.54 -8.69 15.00 5.55 0.08 -8.61 16 19 C -0.15 -1.39 2.46 -91.78 -0.23 -1.61 16 20 H 0.13 0.86 6.32 -51.93 -0.33 0.53 16 21 C -0.12 -0.75 6.60 -25.10 -0.17 -0.92 16 22 C 0.10 0.41 7.78 -3.13 -0.02 0.38 16 23 N -0.73 -4.93 6.24 -59.20 -0.37 -5.30 16 24 C 0.53 5.62 7.85 -10.86 -0.09 5.53 16 25 O -0.51 -7.47 17.65 5.55 0.10 -7.37 16 26 C 0.12 1.36 6.26 -3.61 -0.02 1.34 16 27 C 0.04 0.47 5.62 -3.71 -0.02 0.45 16 28 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 30 H 0.09 1.39 7.97 -51.93 -0.41 0.98 16 31 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 32 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.12 2.30 5.77 -51.93 -0.30 2.00 16 34 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.09 1.45 7.04 -51.93 -0.37 1.08 16 36 H 0.10 0.38 8.14 -51.92 -0.42 -0.04 16 37 H 0.10 0.86 6.88 -51.93 -0.36 0.51 16 38 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 40 H 0.41 2.15 8.96 -40.82 -0.37 1.79 16 41 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.08 0.70 5.55 -51.93 -0.29 0.41 16 43 H 0.09 0.92 7.99 -51.93 -0.41 0.51 16 44 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 357.71 15.07 5.39 5.39 Total: -1.00 -35.48 357.71 -7.69 -43.17 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -6.05 Total: 10.12 kcal Atomic # 6 Polarization: 18.77 SS G_CDS: -1.01 Total: 17.75 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: -1.25 Total: -61.34 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: 0.26 Total: -31.14 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.48 -7.69 -43.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113193805.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.506 kcal (2) G-P(sol) polarization free energy of solvation -35.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds