Wall clock time and date at job start Tue Mar 31 2020 05:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99953 * 2 1 4 4 H 1.48499 * 109.47148 * 270.00473 * 3 2 1 5 5 H 1.48500 * 109.47130 * 30.00294 * 3 2 1 6 6 H 1.48497 * 109.46955 * 150.00547 * 3 2 1 7 7 C 1.37881 * 120.00549 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00595 * 185.06084 * 7 2 1 9 9 C 1.50708 * 119.99305 * 5.05645 * 7 2 1 10 10 C 1.52997 * 115.54744 * 275.10586 * 9 7 2 11 11 N 1.46503 * 109.47325 * 269.45160 * 10 9 7 12 12 C 1.34773 * 120.00406 * 185.01230 * 11 10 9 13 13 O 1.21359 * 119.99920 * 5.01525 * 12 11 10 14 14 C 1.49448 * 120.00384 * 185.02980 * 12 11 10 15 15 O 1.21350 * 119.99648 * 354.58350 * 14 12 11 16 16 N 1.34774 * 120.00411 * 174.59669 * 14 12 11 17 17 C 1.47431 * 125.64556 * 0.03919 * 16 14 12 18 18 C 1.54907 * 104.83063 * 204.08717 * 17 16 14 19 19 C 1.55151 * 101.58545 * 322.99475 * 18 17 16 20 20 H 1.09000 * 110.72083 * 277.13527 * 19 18 17 21 21 N 1.46499 * 110.72240 * 154.04245 * 19 18 17 22 22 C 1.34779 * 120.00292 * 155.00266 * 21 19 18 23 23 N 1.34774 * 120.00260 * 180.02562 * 22 21 19 24 24 O 1.21592 * 119.99603 * 359.97438 * 22 21 19 25 25 C 1.47019 * 125.65032 * 179.97438 * 16 14 12 26 26 C 1.52994 * 117.51822 * 60.81235 * 9 7 2 27 27 C 1.53000 * 60.00407 * 107.47871 * 26 9 7 28 28 H 0.96997 * 120.00224 * 4.99936 * 1 2 3 29 29 H 1.09000 * 109.47308 * 149.45407 * 10 9 7 30 30 H 1.08992 * 109.47537 * 29.45025 * 10 9 7 31 31 H 0.97002 * 119.99746 * 4.99662 * 11 10 9 32 32 H 1.08995 * 110.36489 * 85.25264 * 17 16 14 33 33 H 1.08996 * 110.36525 * 322.92924 * 17 16 14 34 34 H 1.08996 * 111.00420 * 204.91921 * 18 17 16 35 35 H 1.09008 * 111.00410 * 81.06792 * 18 17 16 36 36 H 0.97000 * 119.99622 * 334.99717 * 21 19 18 37 37 H 0.97000 * 119.99654 * 359.97438 * 23 22 21 38 38 H 0.97002 * 120.00389 * 179.97438 * 23 22 21 39 39 H 1.09004 * 109.88075 * 59.56337 * 25 16 14 40 40 H 1.08995 * 109.88245 * 298.39639 * 25 16 14 41 41 H 1.09004 * 117.49799 * 214.97034 * 26 9 7 42 42 H 1.08998 * 117.50209 * 359.97438 * 26 9 7 43 43 H 1.08997 * 117.49311 * 252.51279 * 27 26 9 44 44 H 1.08999 * 117.50319 * 107.48411 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0814 -1.1959 0.0820 9 6 1.2554 -2.4966 -0.1162 10 6 0.7163 -3.0665 1.1974 11 7 1.7188 -3.9535 1.7929 12 6 1.4243 -4.6510 2.9078 13 8 0.3015 -4.6155 3.3669 14 6 2.4805 -5.4680 3.5790 15 8 3.5750 -5.5828 3.0678 16 7 2.2173 -6.0774 4.7519 17 6 0.9364 -6.0231 5.4799 18 6 1.3072 -6.3092 6.9565 19 6 2.4300 -7.3679 6.7964 20 1 2.0056 -8.3628 6.6613 21 7 3.3332 -7.3441 7.9495 22 6 4.0382 -8.4454 8.2763 23 7 4.8687 -8.4236 9.3375 24 8 3.9241 -9.4588 7.6142 25 6 3.1594 -6.9075 5.5166 26 6 0.4225 -2.7233 -1.3793 27 6 1.7295 -3.4925 -1.1766 28 1 -0.4850 0.8368 -0.0732 29 1 -0.1964 -3.6294 1.0018 30 1 0.4991 -2.2499 1.8858 31 1 2.5946 -4.0389 1.3845 32 1 0.2545 -6.7865 5.1053 33 1 0.4884 -5.0340 5.3861 34 1 0.4568 -6.7208 7.5002 35 1 1.6840 -5.4110 7.4458 36 1 3.4240 -6.5357 8.4778 37 1 4.9594 -7.6152 9.8658 38 1 5.3758 -9.2163 9.5729 39 1 4.0391 -6.3211 5.7821 40 1 3.4539 -7.7745 4.9254 41 1 -0.5096 -3.2785 -1.2746 42 1 0.4159 -1.9301 -2.1269 43 1 2.5829 -3.2053 -1.7909 44 1 1.6573 -4.5536 -0.9384 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117685474.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:12 Heat of formation + Delta-G solvation = -93.899462 kcal Electronic energy + Delta-G solvation = -27241.437978 eV Core-core repulsion = 23193.712688 eV Total energy + Delta-G solvation = -4047.725291 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.93053 -40.97689 -39.86375 -38.65825 -38.50131 -35.54290 -34.98474 -34.38372 -33.94679 -31.61001 -29.82211 -28.69682 -27.42073 -25.74193 -23.51108 -22.95243 -22.73419 -21.78803 -21.28583 -20.75868 -19.46524 -18.96420 -18.27021 -18.02880 -17.90941 -17.48090 -16.70064 -16.61167 -16.48078 -16.03040 -15.87051 -15.58565 -15.26891 -15.10712 -15.01548 -14.42292 -14.38166 -14.17266 -13.68994 -13.52721 -13.39037 -13.10103 -13.00201 -12.79684 -12.76442 -12.51197 -12.39020 -12.05779 -11.85663 -11.51684 -11.48656 -10.89912 -10.75971 -10.68386 -10.48346 -10.16866 -10.10295 -10.02053 -9.88874 -8.12518 -6.25346 0.33196 1.14977 1.42344 1.44787 1.53125 1.89275 2.12077 2.13830 2.42648 2.50399 3.16428 3.24951 3.41147 3.52032 3.57510 3.67309 4.02836 4.14296 4.18070 4.27490 4.52468 4.57388 4.57919 4.70623 4.71032 4.76900 4.88914 4.93185 4.99105 5.03638 5.12094 5.24878 5.35043 5.44867 5.58332 5.62732 5.75794 5.87757 5.97375 6.04821 6.26934 6.35337 6.65382 6.81346 6.96282 7.08029 7.44422 7.64665 8.95673 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.021601 B = 0.002399 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.896418 B =11667.280927 C =11973.989836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.028 3.972 3 Si 0.948 3.052 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.000 4.000 10 C 0.179 3.821 11 N -0.676 5.676 12 C 0.501 3.499 13 O -0.541 6.541 14 C 0.522 3.478 15 O -0.547 6.547 16 N -0.586 5.586 17 C 0.093 3.907 18 C -0.122 4.122 19 C 0.162 3.838 20 H 0.103 0.897 21 N -0.720 5.720 22 C 0.700 3.300 23 N -0.847 5.847 24 O -0.644 6.644 25 C 0.093 3.907 26 C -0.150 4.150 27 C -0.181 4.181 28 H 0.261 0.739 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.413 0.587 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.123 0.877 35 H 0.101 0.899 36 H 0.417 0.583 37 H 0.415 0.585 38 H 0.421 0.579 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.085 0.915 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.809 -13.020 20.398 24.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.173 4.173 3 Si 0.774 3.226 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.549 4.549 8 H 0.074 0.926 9 C 0.000 4.000 10 C 0.056 3.944 11 N -0.327 5.327 12 C 0.282 3.718 13 O -0.420 6.420 14 C 0.305 3.695 15 O -0.425 6.425 16 N -0.320 5.320 17 C -0.028 4.028 18 C -0.160 4.160 19 C 0.055 3.945 20 H 0.121 0.879 21 N -0.377 5.377 22 C 0.398 3.602 23 N -0.416 5.416 24 O -0.525 6.525 25 C -0.031 4.031 26 C -0.188 4.188 27 C -0.218 4.218 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.249 0.751 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.141 0.859 35 H 0.119 0.881 36 H 0.255 0.745 37 H 0.246 0.754 38 H 0.253 0.747 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.103 0.897 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.247 -13.611 19.837 24.429 hybrid contribution 1.004 1.455 -0.151 1.775 sum 5.252 -12.155 19.686 23.724 Atomic orbital electron populations 1.70098 1.06933 1.27605 1.49356 1.25643 0.95553 1.01844 0.94280 0.85708 0.78785 0.79909 0.78177 1.20182 1.21177 1.19498 1.20702 0.92674 0.90019 1.51462 0.92642 1.19102 1.00124 0.94401 0.86422 1.20907 0.88741 0.90024 0.94706 1.45960 1.18856 1.42276 1.25583 1.20111 0.88235 0.81294 0.82186 1.90675 1.22330 1.64480 1.64496 1.19836 0.87479 0.80728 0.81487 1.90745 1.24743 1.62451 1.64607 1.48210 1.16549 1.47473 1.19745 1.22810 0.84351 1.04608 0.91062 1.23156 0.98845 0.99100 0.94906 1.21633 0.88950 1.01123 0.82813 0.87901 1.44792 1.46364 1.14405 1.32106 1.16236 0.79335 0.83287 0.81380 1.42803 1.47398 1.20117 1.31244 1.90974 1.71320 1.34016 1.56239 1.22580 0.92975 0.94146 0.93370 1.22477 0.93455 1.01195 1.01670 1.22975 0.97963 0.96221 1.04647 0.92949 0.93218 0.93512 0.75077 0.89811 0.88951 0.85919 0.88099 0.74502 0.75381 0.74657 0.90690 0.91913 0.90577 0.91593 0.89692 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.98 12.90 21.45 0.28 -49.71 16 2 C 0.03 1.48 5.40 84.66 0.46 1.94 16 3 Si 0.95 42.32 29.54 68.60 2.03 44.35 16 4 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 5 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 7 C -0.51 -26.75 8.77 25.60 0.22 -26.52 16 8 H 0.06 2.90 7.82 -2.91 -0.02 2.88 16 9 C 0.00 0.02 1.46 -52.93 -0.08 -0.06 16 10 C 0.18 8.02 5.72 86.38 0.49 8.51 16 11 N -0.68 -26.44 5.39 -464.41 -2.51 -28.95 16 12 C 0.50 18.37 7.83 87.27 0.68 19.05 16 13 O -0.54 -20.71 13.84 -3.28 -0.05 -20.76 16 14 C 0.52 17.31 7.91 87.27 0.69 18.00 16 15 O -0.55 -20.60 16.82 -3.25 -0.05 -20.66 16 16 N -0.59 -14.93 3.33 -813.37 -2.71 -17.64 16 17 C 0.09 1.82 5.98 86.85 0.52 2.34 16 18 C -0.12 -1.27 6.71 31.98 0.21 -1.05 16 19 C 0.16 2.34 3.31 46.18 0.15 2.49 16 20 H 0.10 1.76 7.55 -2.39 -0.02 1.75 16 21 N -0.72 -7.59 5.12 -452.14 -2.31 -9.90 16 22 C 0.70 10.95 8.84 179.05 1.58 12.53 16 23 N -0.85 -5.55 8.88 -184.74 -1.64 -7.19 16 24 O -0.64 -17.17 16.82 -4.01 -0.07 -17.23 16 25 C 0.09 1.99 6.63 86.73 0.57 2.57 16 26 C -0.15 -6.73 9.36 30.59 0.29 -6.44 16 27 C -0.18 -7.30 9.49 30.60 0.29 -7.01 16 28 H 0.26 13.88 8.32 -92.71 -0.77 13.11 16 29 H 0.05 2.21 7.83 -2.39 -0.02 2.19 16 30 H 0.05 2.37 8.03 -2.39 -0.02 2.35 16 31 H 0.41 15.75 7.70 -92.71 -0.71 15.04 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 33 H 0.09 2.14 6.31 -2.39 -0.02 2.13 16 34 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.10 0.77 8.01 -2.38 -0.02 0.75 16 36 H 0.42 1.56 8.58 -92.71 -0.80 0.77 16 37 H 0.42 -0.19 8.84 -92.71 -0.82 -1.01 16 38 H 0.42 2.36 8.93 -92.71 -0.83 1.54 16 39 H 0.07 1.62 8.03 -2.38 -0.02 1.60 16 40 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.08 3.21 8.03 -2.38 -0.02 3.19 16 42 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 43 H 0.08 3.36 8.14 -2.39 -0.02 3.35 16 44 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -72.99 374.21 -3.01 -76.00 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: -2.07 Total: 25.34 kcal Atomic # 6 Polarization: 20.25 SS G_CDS: 6.09 Total: 26.34 kcal Atomic # 7 Polarization: -104.49 SS G_CDS: -8.89 Total: -113.38 kcal Atomic # 8 Polarization: -58.48 SS G_CDS: -0.17 Total: -58.65 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -72.99 -3.01 -76.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117685474.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.897 kcal (2) G-P(sol) polarization free energy of solvation -72.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds