Wall clock time and date at job start Tue Mar 31 2020 05:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36017 * 117.00234 * 2 1 4 4 C 1.35500 * 120.48137 * 0.02562 * 3 2 1 5 5 O 1.33831 * 121.01142 * 179.97438 * 4 3 2 6 6 C 1.34295 * 122.04664 * 0.02562 * 5 4 3 7 7 C 1.48043 * 119.57415 * 179.97438 * 6 5 4 8 8 O 1.21521 * 119.99696 * 179.97438 * 7 6 5 9 9 N 1.34770 * 120.00144 * 0.02562 * 7 6 5 10 10 C 1.46500 * 120.00009 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.46940 * 35.00262 * 10 9 7 12 12 C 1.53001 * 109.47393 * 275.00027 * 10 9 7 13 13 C 1.53004 * 109.46937 * 154.99831 * 10 9 7 14 14 C 1.52995 * 109.47243 * 295.00311 * 13 10 9 15 15 H 1.08994 * 109.47294 * 54.99887 * 14 13 10 16 16 C 1.53006 * 109.47104 * 175.00526 * 14 13 10 17 17 N 1.46505 * 109.47024 * 294.99928 * 14 13 10 18 18 C 1.36931 * 119.99788 * 155.00126 * 17 14 13 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 14 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 14 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48508 * 109.46872 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 119.99997 * 22 20 18 25 25 H 1.48498 * 109.47018 * 240.00044 * 22 20 18 26 26 C 1.35802 * 120.84599 * 0.25843 * 6 5 4 27 27 C 1.42007 * 120.48533 * 180.02562 * 3 2 1 28 28 O 1.22120 * 120.91915 * 359.95347 * 27 3 2 29 29 H 1.09002 * 109.47415 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46579 * 299.99106 * 1 2 3 31 31 H 1.08994 * 109.47233 * 59.99412 * 1 2 3 32 32 H 1.07993 * 119.49134 * 0.02562 * 4 3 2 33 33 H 0.97001 * 120.00253 * 359.97438 * 9 7 6 34 34 H 1.09004 * 109.46844 * 300.00271 * 12 10 9 35 35 H 1.08998 * 109.47096 * 59.99712 * 12 10 9 36 36 H 1.09003 * 109.46930 * 180.02562 * 12 10 9 37 37 H 1.09003 * 109.47011 * 174.99909 * 13 10 9 38 38 H 1.09002 * 109.46836 * 55.00406 * 13 10 9 39 39 H 1.08991 * 109.47054 * 180.02562 * 16 14 13 40 40 H 1.09004 * 109.46242 * 299.99533 * 16 14 13 41 41 H 1.08994 * 109.47567 * 59.99528 * 16 14 13 42 42 H 0.97000 * 119.99792 * 334.99921 * 17 14 13 43 43 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 44 44 H 1.08001 * 120.54521 * 179.74196 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2119 0.0000 4 6 1.3182 2.3545 0.0005 5 8 1.9148 3.5525 0.0010 6 6 3.2514 3.6829 0.0006 7 6 3.8535 5.0354 0.0006 8 8 5.0621 5.1623 0.0006 9 7 3.0614 6.1257 0.0016 10 6 3.6573 7.4640 0.0022 11 1 4.5738 7.4539 -0.5876 12 6 3.9802 7.8779 1.4394 13 6 2.6701 8.4621 -0.6064 14 6 2.4432 8.1206 -2.0804 15 1 2.1214 7.0829 -2.1676 16 6 1.3639 9.0395 -2.6565 17 7 3.6920 8.3087 -2.8231 18 6 3.9085 7.6170 -3.9848 19 1 3.1585 6.9330 -4.3538 20 6 5.0892 7.7995 -4.6915 21 7 6.0029 8.6335 -4.2420 22 14 5.3813 6.8617 -6.2804 23 1 4.2101 5.9942 -6.5655 24 1 5.5686 7.8238 -7.3958 25 1 6.5975 6.0208 -6.1424 26 6 4.0576 2.5902 -0.0057 27 6 3.4640 1.2982 -0.0005 28 8 4.1540 0.2906 -0.0002 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 0.2398 2.2975 0.0014 33 1 2.0967 6.0244 0.0020 34 1 3.0636 7.8880 2.0292 35 1 4.6834 7.1669 1.8729 36 1 4.4232 8.8739 1.4398 37 1 3.0763 9.4703 -0.5253 38 1 1.7223 8.4081 -0.0708 39 1 1.2020 8.7960 -3.7064 40 1 0.4349 8.8995 -2.1039 41 1 1.6857 10.0772 -2.5692 42 1 4.3654 8.9233 -2.4918 43 1 6.8282 8.7607 -4.7357 44 1 5.1319 2.7007 -0.0103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134988443.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:31 Heat of formation + Delta-G solvation = -113.426028 kcal Electronic energy + Delta-G solvation = -27951.493523 eV Core-core repulsion = 23870.628746 eV Total energy + Delta-G solvation = -4080.864777 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.30997 -41.07295 -40.24676 -39.28149 -38.41824 -36.20437 -34.08363 -33.87126 -32.88794 -31.69611 -30.38421 -28.69531 -27.58020 -26.47025 -25.62754 -25.03677 -23.07412 -21.96557 -21.22419 -20.28542 -19.91558 -19.30584 -18.95846 -17.98393 -17.42832 -17.16930 -16.69595 -16.56666 -16.26541 -15.99563 -15.85272 -15.62107 -15.54309 -15.34361 -15.26029 -15.04864 -14.50937 -14.27306 -13.77505 -13.57894 -13.36511 -13.17401 -12.96942 -12.79529 -12.64737 -12.45810 -12.44491 -12.26668 -12.14061 -11.81891 -11.63826 -11.52305 -11.40491 -11.10299 -10.95718 -10.90790 -10.17559 -9.43416 -8.92666 -7.91329 -5.15717 -0.85876 -0.19067 0.84657 1.42837 1.45399 1.52440 1.52591 1.83421 2.03000 2.21368 2.56785 3.18746 3.21723 3.34843 3.44149 3.81526 3.83663 4.04425 4.12704 4.20106 4.25559 4.32203 4.41146 4.42269 4.56575 4.71203 4.75330 4.78263 4.83432 4.86473 4.95456 5.05730 5.15448 5.21700 5.36506 5.38076 5.50564 5.58339 5.65353 5.69213 5.96502 6.32437 6.33160 6.44624 6.94096 7.39032 8.20143 8.38481 9.32541 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.010825 B = 0.003747 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.964083 B = 7471.084531 C = 8408.789950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.314 6.314 3 C -0.074 4.074 4 C 0.037 3.963 5 O -0.175 6.175 6 C 0.116 3.884 7 C 0.571 3.429 8 O -0.539 6.539 9 N -0.676 5.676 10 C 0.142 3.858 11 H 0.056 0.944 12 C -0.154 4.154 13 C -0.118 4.118 14 C 0.161 3.839 15 H 0.046 0.954 16 C -0.157 4.157 17 N -0.733 5.733 18 C -0.222 4.222 19 H 0.071 0.929 20 C -0.076 4.076 21 N -0.967 5.967 22 Si 0.954 3.046 23 H -0.267 1.267 24 H -0.293 1.293 25 H -0.303 1.303 26 C -0.247 4.247 27 C 0.397 3.603 28 O -0.518 6.518 29 H 0.118 0.882 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.261 0.739 33 H 0.421 0.579 34 H 0.087 0.913 35 H 0.041 0.959 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.113 0.887 39 H 0.027 0.973 40 H 0.079 0.921 41 H 0.041 0.959 42 H 0.371 0.629 43 H 0.247 0.753 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.382 -7.678 14.936 26.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.229 6.229 3 C -0.122 4.122 4 C -0.029 4.029 5 O -0.076 6.076 6 C 0.064 3.936 7 C 0.354 3.646 8 O -0.417 6.417 9 N -0.327 5.327 10 C 0.038 3.962 11 H 0.074 0.926 12 C -0.212 4.212 13 C -0.156 4.156 14 C 0.053 3.947 15 H 0.064 0.936 16 C -0.217 4.217 17 N -0.373 5.373 18 C -0.355 4.355 19 H 0.089 0.911 20 C -0.268 4.268 21 N -0.619 5.619 22 Si 0.785 3.215 23 H -0.191 1.191 24 H -0.221 1.221 25 H -0.231 1.231 26 C -0.269 4.269 27 C 0.289 3.711 28 O -0.406 6.406 29 H 0.136 0.864 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.277 0.723 33 H 0.260 0.740 34 H 0.105 0.895 35 H 0.060 0.940 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.131 0.869 39 H 0.046 0.954 40 H 0.098 0.902 41 H 0.060 0.940 42 H 0.203 0.797 43 H 0.056 0.944 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -19.338 -8.147 14.798 25.677 hybrid contribution 0.839 -0.491 -1.265 1.595 sum -18.499 -8.638 13.533 24.494 Atomic orbital electron populations 1.23649 0.75466 1.06752 1.03509 1.86259 1.24005 1.23530 1.89077 1.20692 0.93940 0.87642 1.09898 1.24816 0.99717 0.79166 0.99160 1.82952 1.18425 1.31836 1.74375 1.22098 0.81048 0.94930 0.95561 1.17518 0.86241 0.82922 0.77959 1.90914 1.14869 1.85141 1.50804 1.45812 1.10813 1.04988 1.71127 1.21080 0.97396 0.80311 0.97411 0.92610 1.22112 1.02667 1.01743 0.94644 1.22108 1.00202 0.98518 0.94805 1.20576 0.86202 0.97234 0.90702 0.93590 1.22309 0.99302 0.99831 1.00217 1.42639 1.18005 1.51068 1.25581 1.19532 1.00021 1.16671 0.99252 0.91084 1.25358 0.97532 1.01653 1.02236 1.69784 1.09061 1.41601 1.41432 0.85343 0.77383 0.77990 0.80783 1.19104 1.22056 1.23144 1.23047 1.03522 0.91583 1.08738 1.17503 0.88150 0.89166 0.76327 1.90805 1.66554 1.39219 1.44020 0.86384 0.89694 0.90222 0.72340 0.74000 0.89461 0.94010 0.90765 0.90102 0.86889 0.95352 0.90248 0.94001 0.79733 0.94445 0.82226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.82 113.37 1.11 1.11 16 2 O -0.31 -6.50 10.35 -79.16 -0.82 -7.32 16 3 C -0.07 -1.61 6.72 22.57 0.15 -1.46 16 4 C 0.04 0.46 10.43 67.19 0.70 1.16 16 5 O -0.18 -2.80 9.06 2.06 0.02 -2.78 16 6 C 0.12 2.87 6.90 24.31 0.17 3.04 16 7 C 0.57 17.06 7.76 86.85 0.67 17.74 16 8 O -0.54 -21.50 15.92 -3.78 -0.06 -21.56 16 9 N -0.68 -16.05 4.44 -445.23 -1.98 -18.03 16 10 C 0.14 3.86 2.52 44.99 0.11 3.97 16 11 H 0.06 2.20 7.05 -2.39 -0.02 2.19 16 12 C -0.15 -3.32 9.48 71.98 0.68 -2.64 16 13 C -0.12 -2.79 4.29 30.59 0.13 -2.66 16 14 C 0.16 5.24 2.84 44.99 0.13 5.37 16 15 H 0.05 1.50 7.56 -2.39 -0.02 1.48 16 16 C -0.16 -4.59 9.49 71.98 0.68 -3.90 16 17 N -0.73 -34.19 4.49 -322.93 -1.45 -35.64 16 18 C -0.22 -12.00 9.93 84.04 0.83 -11.17 16 19 H 0.07 3.72 7.83 -2.91 -0.02 3.69 16 20 C -0.08 -4.37 5.50 84.86 0.47 -3.91 16 21 N -0.97 -59.81 13.06 21.65 0.28 -59.53 16 22 Si 0.95 47.38 29.55 68.60 2.03 49.41 16 23 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 25 H -0.30 -15.54 7.11 99.48 0.71 -14.84 16 26 C -0.25 -7.28 9.56 22.68 0.22 -7.06 16 27 C 0.40 12.23 6.82 24.18 0.16 12.40 16 28 O -0.52 -20.33 17.74 8.86 0.16 -20.18 16 29 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.08 0.13 7.67 -2.38 -0.02 0.11 16 31 H 0.08 0.23 7.67 -2.39 -0.02 0.21 16 32 H 0.26 0.16 6.21 -2.91 -0.02 0.14 16 33 H 0.42 6.66 8.00 -92.71 -0.74 5.92 16 34 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.37 19.03 7.80 -92.71 -0.72 18.30 16 43 H 0.25 14.99 8.31 -92.70 -0.77 14.22 16 44 H 0.16 5.23 7.56 -2.91 -0.02 5.21 16 Total: -1.00 -84.66 376.94 3.98 -80.68 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: -0.42 Total: 22.96 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 6.23 Total: 11.99 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -3.15 Total: -113.20 kcal Atomic # 8 Polarization: -51.13 SS G_CDS: -0.70 Total: -51.84 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Total: -84.66 3.98 -80.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134988443.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.744 kcal (2) G-P(sol) polarization free energy of solvation -84.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds