Wall clock time and date at job start Tue Mar 31 2020 05:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86792 * 119.99895 * 2 1 4 4 H 1.48499 * 109.47543 * 265.53667 * 3 2 1 5 5 H 1.48498 * 109.47126 * 25.53556 * 3 2 1 6 6 H 1.48497 * 109.47284 * 145.53351 * 3 2 1 7 7 C 1.38807 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99983 * 356.15177 * 7 2 1 9 9 N 1.36932 * 120.00457 * 176.15590 * 7 2 1 10 10 C 1.46498 * 120.00418 * 183.71562 * 9 7 2 11 11 C 1.53003 * 109.47081 * 185.45306 * 10 9 7 12 12 C 1.53006 * 115.54778 * 62.35408 * 11 10 9 13 13 C 1.53001 * 109.47156 * 40.03532 * 12 11 10 14 14 N 1.46500 * 109.46931 * 174.39439 * 13 12 11 15 15 C 1.34780 * 119.99785 * 184.45665 * 14 13 12 16 16 O 1.21275 * 119.99930 * 355.20096 * 15 14 13 17 17 C 1.50702 * 119.99991 * 175.47361 * 15 14 13 18 18 N 1.46499 * 109.47219 * 180.02562 * 17 15 14 19 19 C 1.34764 * 124.17264 * 269.72593 * 18 17 15 20 20 O 1.21236 * 127.16160 * 359.97438 * 19 18 17 21 21 C 1.51585 * 105.68640 * 179.97438 * 19 18 17 22 22 N 1.47312 * 103.58728 * 0.31983 * 21 19 18 23 23 C 1.33785 * 124.18283 * 90.02142 * 18 17 15 24 24 O 1.21538 * 123.77033 * 359.96434 * 23 18 17 25 25 C 1.52996 * 117.51845 * 208.05137 * 11 10 9 26 26 C 1.52998 * 117.50154 * 276.68380 * 11 10 9 27 27 H 0.96995 * 120.00126 * 0.02562 * 1 2 3 28 28 H 0.97009 * 119.99540 * 3.71256 * 9 7 2 29 29 H 1.08994 * 109.47395 * 65.45778 * 10 9 7 30 30 H 1.08998 * 109.46918 * 305.45269 * 10 9 7 31 31 H 1.09000 * 109.47288 * 280.03117 * 12 11 10 32 32 H 1.09007 * 109.47002 * 160.03321 * 12 11 10 33 33 H 1.09000 * 109.47199 * 54.39669 * 13 12 11 34 34 H 1.09001 * 109.47184 * 294.39445 * 13 12 11 35 35 H 0.96999 * 120.00384 * 4.45357 * 14 13 12 36 36 H 1.09006 * 109.46588 * 300.00155 * 17 15 14 37 37 H 1.08995 * 109.47262 * 59.99731 * 17 15 14 38 38 H 1.08994 * 110.76884 * 241.71153 * 21 19 18 39 39 H 1.09000 * 110.56492 * 118.82696 * 21 19 18 40 40 H 0.97007 * 126.68972 * 179.76476 * 22 21 19 41 41 H 1.09004 * 117.49998 * 214.96971 * 25 11 10 42 42 H 1.08999 * 117.49912 * 359.97438 * 25 11 10 43 43 H 1.09000 * 117.49740 * 359.97438 * 26 11 10 44 44 H 1.08997 * 117.49648 * 144.99876 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5921 1.9920 -1.3958 5 1 1.4036 2.6780 0.6035 6 1 3.4973 1.4693 0.7923 7 6 2.0103 -1.2021 -0.0005 8 1 1.4721 -2.1364 0.0618 9 7 3.3773 -1.2035 -0.0800 10 6 4.1050 -2.4722 -0.1627 11 6 5.6098 -2.2018 -0.1042 12 6 6.1140 -1.5534 1.1867 13 6 5.3888 -2.1704 2.3844 14 7 5.9643 -1.6476 3.6260 15 6 5.5421 -2.1198 4.8156 16 8 4.6260 -2.9132 4.8625 17 6 6.2043 -1.6574 6.0879 18 7 5.5693 -2.3115 7.2347 19 6 4.5146 -1.8074 7.9052 20 8 3.9345 -0.7665 7.6822 21 6 4.2042 -2.8127 8.9965 22 7 5.2200 -3.8614 8.8001 23 6 5.9682 -3.4803 7.7491 24 8 6.9033 -4.1249 7.3164 25 6 6.5353 -3.2013 -0.8009 26 6 6.3095 -1.8155 -1.4088 27 1 -0.4850 0.8400 -0.0004 28 1 3.8639 -0.3642 -0.0816 29 1 3.8617 -2.9702 -1.1012 30 1 3.8179 -3.1109 0.6726 31 1 5.9178 -0.4817 1.1557 32 1 7.1863 -1.7238 1.2841 33 1 5.5027 -3.2541 2.3592 34 1 4.3301 -1.9151 2.3389 35 1 6.6492 -0.9616 3.5920 36 1 7.2626 -1.9173 6.0619 37 1 6.0979 -0.5766 6.1809 38 1 3.2017 -3.2216 8.8715 39 1 4.3106 -2.3552 9.9801 40 1 5.3281 -4.6693 9.3260 41 1 7.5034 -3.3968 -0.3397 42 1 6.0722 -4.0520 -1.3008 43 1 5.6978 -1.7543 -2.3089 44 1 7.1290 -1.0994 -1.3474 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168032369.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:02 Heat of formation + Delta-G solvation = -31.438118 kcal Electronic energy + Delta-G solvation = -27599.680773 eV Core-core repulsion = 23554.664010 eV Total energy + Delta-G solvation = -4045.016764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.63098 -39.62694 -38.82257 -38.37911 -36.36350 -35.12161 -34.69509 -34.05242 -31.17150 -30.62829 -28.71706 -27.72322 -26.20697 -23.59434 -23.17441 -22.48582 -21.82834 -21.46560 -20.38912 -18.89109 -18.35345 -17.96656 -17.34459 -17.10601 -16.53518 -16.31794 -15.63045 -15.51466 -15.42028 -15.03568 -14.57307 -14.44907 -14.33737 -14.18620 -14.07248 -13.68438 -13.36590 -13.22140 -12.61041 -12.51104 -12.35733 -11.90955 -11.57502 -11.43981 -11.30936 -11.13939 -10.88994 -10.77599 -10.64588 -10.56428 -10.22360 -9.91006 -9.87837 -9.64955 -9.54756 -9.45997 -8.98879 -8.83534 -7.18351 -5.72427 -3.07423 1.37367 1.75582 2.53979 2.63902 2.81752 3.21648 3.39592 3.41619 3.47366 3.67944 3.93854 4.40109 4.53769 4.62989 4.63700 4.78349 4.82246 4.85870 4.93329 5.04941 5.10226 5.21732 5.27861 5.41653 5.57276 5.65311 5.69344 5.79217 5.88501 6.08359 6.19742 6.27873 6.33069 6.37684 6.39631 6.48024 6.68196 6.68714 6.74528 7.06651 7.41526 7.79430 8.04553 8.14826 8.46963 9.25974 9.98013 10.18540 11.46217 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.011983 B = 0.003385 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.128088 B = 8270.015087 C = 9791.853743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.006 3.994 3 Si 0.882 3.118 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.242 4.242 8 H 0.090 0.910 9 N -0.749 5.749 10 C 0.190 3.810 11 C -0.128 4.128 12 C -0.085 4.085 13 C 0.119 3.881 14 N -0.723 5.723 15 C 0.497 3.503 16 O -0.524 6.524 17 C 0.101 3.899 18 N -0.562 5.562 19 C 0.524 3.476 20 O -0.460 6.460 21 C 0.066 3.934 22 N -0.728 5.728 23 C 0.709 3.291 24 O -0.542 6.542 25 C -0.171 4.171 26 C -0.170 4.170 27 H 0.259 0.741 28 H 0.360 0.640 29 H 0.025 0.975 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.398 0.602 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.442 0.558 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.975 -4.674 16.788 25.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.190 4.190 3 Si 0.713 3.287 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.372 4.372 8 H 0.107 0.893 9 N -0.394 5.394 10 C 0.063 3.937 11 C -0.129 4.129 12 C -0.123 4.123 13 C -0.004 4.004 14 N -0.376 5.376 15 C 0.281 3.719 16 O -0.399 6.399 17 C -0.025 4.025 18 N -0.308 5.308 19 C 0.311 3.689 20 O -0.329 6.329 21 C -0.062 4.062 22 N -0.392 5.392 23 C 0.409 3.591 24 O -0.416 6.416 25 C -0.209 4.209 26 C -0.207 4.207 27 H 0.069 0.931 28 H 0.192 0.808 29 H 0.043 0.957 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.232 0.768 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.286 0.714 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.116 0.884 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 17.258 -5.063 16.388 24.332 hybrid contribution 0.830 1.261 0.106 1.514 sum 18.088 -3.801 16.494 24.772 Atomic orbital electron populations 1.69705 1.05106 1.25767 1.57601 1.24645 0.95174 0.97103 1.02072 0.86587 0.79257 0.85146 0.77754 1.21079 1.21827 1.20455 1.19053 0.80765 0.94799 1.42602 0.89258 1.42555 1.04108 1.02103 1.90644 1.20203 0.85343 0.89373 0.98747 1.21659 0.95477 1.03232 0.92534 1.21191 0.98628 1.00356 0.92116 1.21542 0.99653 0.98438 0.80753 1.45895 1.42994 1.42684 1.05984 1.20633 0.83946 0.82123 0.85201 1.90762 1.28105 1.34155 1.86879 1.21458 0.98952 0.99487 0.82590 1.45789 1.32411 1.22298 1.30304 1.20908 0.78672 0.86406 0.82893 1.90870 1.51160 1.22372 1.68474 1.22459 0.95605 0.88247 0.99864 1.45337 1.33736 1.25869 1.34301 1.15736 0.82449 0.80513 0.80372 1.91017 1.29645 1.56407 1.64497 1.23024 1.00185 0.93510 1.04171 1.22973 1.02672 0.97817 0.97224 0.93104 0.80797 0.95674 0.94498 0.90977 0.91770 0.91334 0.89109 0.76792 0.85544 0.85670 0.85554 0.85765 0.71376 0.89129 0.88745 0.88431 0.89285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.01 13.97 55.49 0.78 -29.23 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 22.49 27.56 -169.99 -4.68 17.80 16 4 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 6 H -0.28 -6.64 6.78 56.52 0.38 -6.26 16 7 C -0.24 -6.99 10.47 -15.06 -0.16 -7.15 16 8 H 0.09 2.78 8.06 -52.48 -0.42 2.36 16 9 N -0.75 -17.79 5.15 -59.91 -0.31 -18.10 16 10 C 0.19 3.71 5.28 -4.04 -0.02 3.69 16 11 C -0.13 -1.91 1.86 -154.51 -0.29 -2.20 16 12 C -0.09 -1.14 5.25 -26.73 -0.14 -1.28 16 13 C 0.12 1.82 4.64 -4.04 -0.02 1.80 16 14 N -0.72 -9.12 5.55 -60.29 -0.33 -9.46 16 15 C 0.50 7.19 7.89 -10.98 -0.09 7.10 16 16 O -0.52 -10.11 16.44 5.56 0.09 -10.02 16 17 C 0.10 1.02 6.18 -5.19 -0.03 0.99 16 18 N -0.56 -6.28 2.09 -122.02 -0.26 -6.54 16 19 C 0.52 5.60 8.31 -10.56 -0.09 5.52 16 20 O -0.46 -6.46 17.75 5.60 0.10 -6.36 16 21 C 0.07 0.38 7.97 -4.31 -0.03 0.34 16 22 N -0.73 -5.01 6.58 -65.74 -0.43 -5.44 16 23 C 0.71 8.01 8.62 -88.03 -0.76 7.25 16 24 O -0.54 -7.90 17.48 5.33 0.09 -7.81 16 25 C -0.17 -2.11 9.88 -26.73 -0.26 -2.38 16 26 C -0.17 -2.27 9.97 -26.73 -0.27 -2.53 16 27 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 28 H 0.36 8.33 5.62 -40.82 -0.23 8.10 16 29 H 0.03 0.51 8.11 -51.93 -0.42 0.09 16 30 H 0.04 0.76 6.96 -51.93 -0.36 0.40 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.68 7.95 -51.93 -0.41 0.27 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.09 1.79 7.09 -51.93 -0.37 1.42 16 35 H 0.40 3.47 8.48 -40.82 -0.35 3.13 16 36 H 0.13 0.98 7.86 -51.93 -0.41 0.57 16 37 H 0.13 0.99 8.00 -51.93 -0.42 0.57 16 38 H 0.13 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.12 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.44 1.84 8.96 -40.82 -0.37 1.47 16 41 H 0.09 0.96 8.09 -51.93 -0.42 0.54 16 42 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 44 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 375.88 15.07 5.66 5.66 Total: -1.00 -40.49 375.88 -7.83 -48.32 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -6.28 Total: 9.93 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: -2.25 Total: 11.23 kcal Atomic # 7 Polarization: -68.21 SS G_CDS: -0.56 Total: -68.77 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: 0.28 Total: -24.19 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.68 Total: 17.80 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -40.49 -7.83 -48.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168032369.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.878 kcal (2) G-P(sol) polarization free energy of solvation -40.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds