Wall clock time and date at job start Tue Mar 31 2020 05:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00030 * 2 1 4 4 H 1.48508 * 109.47153 * 270.00428 * 3 2 1 5 5 H 1.48504 * 109.47260 * 30.00311 * 3 2 1 6 6 H 1.48494 * 109.47031 * 150.00549 * 3 2 1 7 7 C 1.37869 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00095 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00420 * 179.97438 * 7 2 1 10 10 N 1.46905 * 109.47545 * 185.01760 * 9 7 2 11 11 C 1.46896 * 110.99629 * 295.09982 * 10 9 7 12 12 C 1.53241 * 109.33711 * 187.25311 * 11 10 9 13 13 N 1.47085 * 108.52140 * 306.17192 * 12 11 10 14 14 C 1.34780 * 120.87908 * 231.18853 * 13 12 11 15 15 O 1.21278 * 120.00334 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99582 * 179.97438 * 14 13 12 17 17 C 1.52999 * 109.46943 * 179.97438 * 16 14 13 18 18 H 1.09006 * 109.10158 * 54.13425 * 17 16 14 19 19 N 1.45664 * 109.11807 * 295.00725 * 17 16 14 20 20 C 1.33659 * 122.84240 * 258.99537 * 19 17 16 21 21 O 1.21282 * 118.64488 * 179.89245 * 20 19 17 22 22 C 1.49908 * 122.71435 * 359.92105 * 20 19 17 23 23 N 1.45654 * 111.29545 * 340.30868 * 22 20 19 24 24 C 1.33667 * 122.85178 * 19.46176 * 23 22 20 25 25 O 1.21281 * 118.64508 * 179.97438 * 24 23 22 26 26 C 1.47077 * 118.23594 * 51.45589 * 13 12 11 27 27 C 1.46896 * 110.99708 * 59.40087 * 10 9 7 28 28 H 0.97004 * 120.00089 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46967 * 65.01475 * 9 7 2 30 30 H 1.09000 * 109.47295 * 305.02022 * 9 7 2 31 31 H 1.08998 * 109.49592 * 67.29672 * 11 10 9 32 32 H 1.08999 * 109.51908 * 307.22351 * 11 10 9 33 33 H 1.09004 * 109.63294 * 186.45902 * 12 11 10 34 34 H 1.09001 * 109.78874 * 65.97365 * 12 11 10 35 35 H 1.09003 * 109.47103 * 60.00635 * 16 14 13 36 36 H 1.08997 * 109.47367 * 300.00021 * 16 14 13 37 37 H 0.96994 * 118.57662 * 79.01639 * 19 17 16 38 38 H 1.09007 * 109.11160 * 100.77105 * 22 20 19 39 39 H 1.08997 * 109.11432 * 219.83936 * 22 20 19 40 40 H 0.97005 * 118.57587 * 199.44414 * 23 22 20 41 41 H 1.08997 * 109.63077 * 68.25335 * 26 13 12 42 42 H 1.09003 * 109.62364 * 188.83580 * 26 13 12 43 43 H 1.09005 * 109.49406 * 292.70629 * 27 10 9 44 44 H 1.08994 * 109.49377 * 52.78514 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0011 -2.5738 -0.1227 11 6 3.6285 -3.3702 1.0540 12 6 4.3075 -4.7416 0.9742 13 7 3.9746 -5.3531 -0.3214 14 6 3.4829 -6.6062 -0.3890 15 8 3.3099 -7.2454 0.6270 16 6 3.1480 -7.2130 -1.7272 17 6 2.6127 -8.6318 -1.5242 18 1 1.7791 -8.6016 -0.8224 19 7 3.6710 -9.4665 -0.9718 20 6 4.3859 -10.3170 -1.7150 21 8 5.2511 -10.9742 -1.1762 22 6 4.1627 -10.4915 -3.1870 23 7 2.8452 -10.0128 -3.5828 24 6 2.1275 -9.1661 -2.8380 25 8 1.0386 -8.8164 -3.2414 26 6 4.1981 -4.5630 -1.5417 27 6 3.5179 -3.1964 -1.3624 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.7602 0.9304 30 1 3.8745 -0.6042 -0.8427 31 1 2.5467 -3.5007 1.0772 32 1 3.9524 -2.8562 1.9590 33 1 3.9457 -5.3770 1.7827 34 1 5.3880 -4.6239 1.0567 35 1 4.0455 -7.2486 -2.3448 36 1 2.3902 -6.6057 -2.2221 37 1 3.8652 -9.4026 -0.0237 38 1 4.9239 -9.9331 -3.7321 39 1 4.2487 -11.5486 -3.4382 40 1 2.4726 -10.3216 -4.4234 41 1 5.2680 -4.4252 -1.6978 42 1 3.7639 -5.0801 -2.3973 43 1 2.4375 -3.3293 -1.3055 44 1 3.7619 -2.5561 -2.2101 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183717688.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:22 Heat of formation + Delta-G solvation = -115.098735 kcal Electronic energy + Delta-G solvation = -28193.029197 eV Core-core repulsion = 24144.384637 eV Total energy + Delta-G solvation = -4048.644560 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.35498 -41.08550 -40.07414 -39.13013 -36.86038 -36.10796 -35.86633 -34.37569 -32.68930 -31.59986 -30.35751 -28.95606 -27.49472 -26.31126 -24.51428 -23.88186 -23.56516 -21.88138 -20.15565 -19.42525 -19.19089 -19.12452 -18.79495 -18.06775 -17.63860 -17.26631 -16.71225 -16.64325 -16.49305 -16.04185 -15.82345 -15.59707 -15.47790 -15.14540 -14.81978 -14.70626 -14.61591 -14.44275 -14.20387 -13.94175 -13.77454 -13.36909 -13.07742 -12.99465 -12.84463 -12.47563 -12.23708 -12.16735 -11.93447 -11.85259 -11.65016 -11.56839 -11.27562 -10.88637 -10.79998 -10.45137 -10.29878 -9.78186 -9.04433 -8.32761 -6.39154 1.11843 1.31983 1.36257 1.38438 1.49904 1.50404 1.82672 1.94891 2.15641 2.33246 2.92286 3.02909 3.18848 3.25901 3.48847 3.61533 3.87368 4.01227 4.09627 4.26978 4.28293 4.34858 4.37584 4.43580 4.48546 4.54013 4.61941 4.75682 4.86759 4.99236 5.04100 5.10053 5.19642 5.37874 5.45381 5.47317 5.58459 5.86849 6.01214 6.12095 6.25596 6.32793 6.39267 6.68267 6.78464 6.96836 7.04339 7.28546 8.83618 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.022203 B = 0.002827 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.794829 B = 9903.374920 C =10497.249963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.009 3.991 3 Si 0.952 3.048 4 H -0.263 1.263 5 H -0.289 1.289 6 H -0.244 1.244 7 C -0.551 4.551 8 H 0.029 0.971 9 C 0.161 3.839 10 N -0.524 5.524 11 C 0.052 3.948 12 C 0.127 3.873 13 N -0.609 5.609 14 C 0.517 3.483 15 O -0.577 6.577 16 C -0.146 4.146 17 C 0.149 3.851 18 H 0.118 0.882 19 N -0.703 5.703 20 C 0.507 3.493 21 O -0.578 6.578 22 C 0.102 3.898 23 N -0.699 5.699 24 C 0.525 3.475 25 O -0.564 6.564 26 C 0.117 3.883 27 C 0.044 3.956 28 H 0.266 0.734 29 H 0.030 0.970 30 H 0.038 0.962 31 H 0.005 0.995 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.134 0.866 36 H 0.124 0.876 37 H 0.411 0.589 38 H 0.140 0.860 39 H 0.146 0.854 40 H 0.424 0.576 41 H 0.100 0.900 42 H 0.114 0.886 43 H 0.011 0.989 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.779 -18.268 -10.079 24.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.189 4.189 3 Si 0.776 3.224 4 H -0.188 1.188 5 H -0.215 1.215 6 H -0.167 1.167 7 C -0.590 4.590 8 H 0.047 0.953 9 C 0.034 3.966 10 N -0.247 5.247 11 C -0.078 4.078 12 C 0.004 3.996 13 N -0.341 5.341 14 C 0.307 3.693 15 O -0.458 6.458 16 C -0.186 4.186 17 C 0.040 3.960 18 H 0.135 0.865 19 N -0.357 5.357 20 C 0.294 3.706 21 O -0.457 6.457 22 C -0.024 4.024 23 N -0.354 5.354 24 C 0.310 3.690 25 O -0.441 6.441 26 C -0.005 4.005 27 C -0.085 4.085 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.023 0.977 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.152 0.848 36 H 0.142 0.858 37 H 0.249 0.751 38 H 0.157 0.843 39 H 0.164 0.836 40 H 0.264 0.736 41 H 0.118 0.882 42 H 0.132 0.868 43 H 0.030 0.970 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 13.002 -18.592 -9.544 24.613 hybrid contribution -1.634 1.123 0.600 2.072 sum 11.367 -17.469 -8.944 22.680 Atomic orbital electron populations 1.70094 1.08550 1.28217 1.52080 1.25971 0.95488 1.03640 0.93775 0.85634 0.79451 0.78013 0.79350 1.18833 1.21537 1.16683 1.21892 0.92912 0.92940 1.51260 0.95279 1.20061 0.91527 0.87774 0.97266 1.62460 1.57574 1.02636 1.02068 1.22255 0.96730 0.94054 0.94732 1.21658 1.00567 0.91877 0.85527 1.48259 1.62948 1.14024 1.08847 1.20748 0.75971 0.81119 0.91505 1.90638 1.55281 1.61739 1.38149 1.22138 1.05830 0.94816 0.95863 1.20653 0.91744 0.89934 0.93688 0.86462 1.45766 1.35462 1.40627 1.13894 1.20763 0.80503 0.78448 0.90841 1.90830 1.34565 1.47150 1.73190 1.21672 0.85651 1.05672 0.89447 1.45304 1.19005 1.46017 1.25060 1.19727 0.84556 0.78954 0.85771 1.90864 1.22004 1.59226 1.72053 1.22214 1.02420 0.89705 0.86168 1.22444 0.96608 0.95885 0.93577 0.92556 0.95210 0.94390 0.97686 0.90075 0.89823 0.89056 0.84760 0.85826 0.75051 0.84258 0.83617 0.73594 0.88170 0.86826 0.97047 0.89290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.47 13.96 21.44 0.30 -58.17 16 2 C 0.01 0.52 5.47 84.65 0.46 0.98 16 3 Si 0.95 42.31 27.37 68.60 1.88 44.19 16 4 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.24 -9.93 6.69 99.48 0.67 -9.26 16 7 C -0.55 -30.13 8.30 25.60 0.21 -29.92 16 8 H 0.03 1.81 6.13 -2.91 -0.02 1.79 16 9 C 0.16 7.11 4.18 85.56 0.36 7.47 16 10 N -0.52 -19.27 4.83 -898.88 -4.34 -23.61 16 11 C 0.05 1.86 5.24 86.38 0.45 2.31 16 12 C 0.13 3.60 6.60 86.35 0.57 4.17 16 13 N -0.61 -15.63 3.00 -817.03 -2.45 -18.09 16 14 C 0.52 12.83 7.56 87.66 0.66 13.49 16 15 O -0.58 -17.56 13.99 -3.02 -0.04 -17.60 16 16 C -0.15 -2.44 3.69 29.85 0.11 -2.33 16 17 C 0.15 2.64 2.81 44.15 0.12 2.77 16 18 H 0.12 2.47 7.91 -2.38 -0.02 2.45 16 19 N -0.70 -12.60 4.77 -451.39 -2.16 -14.75 16 20 C 0.51 8.28 7.84 87.58 0.69 8.97 16 21 O -0.58 -14.24 17.82 -3.04 -0.05 -14.29 16 22 C 0.10 0.62 7.27 85.54 0.62 1.24 16 23 N -0.70 -6.05 5.50 -472.30 -2.60 -8.65 16 24 C 0.53 8.81 7.05 87.58 0.62 9.43 16 25 O -0.56 -14.14 17.82 -3.03 -0.05 -14.19 16 26 C 0.12 2.54 6.53 86.50 0.57 3.10 16 27 C 0.04 1.43 5.17 86.54 0.45 1.88 16 28 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 29 H 0.03 1.32 7.47 -2.38 -0.02 1.30 16 30 H 0.04 1.61 7.29 -2.39 -0.02 1.60 16 31 H 0.00 0.21 6.92 -2.39 -0.02 0.20 16 32 H 0.08 2.83 8.06 -2.39 -0.02 2.81 16 33 H 0.08 2.50 7.06 -2.38 -0.02 2.48 16 34 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.13 1.39 7.99 -2.39 -0.02 1.37 16 36 H 0.12 2.07 7.66 -2.39 -0.02 2.05 16 37 H 0.41 8.96 7.53 -92.71 -0.70 8.26 16 38 H 0.14 0.11 8.14 -2.38 -0.02 0.09 16 39 H 0.15 0.27 8.14 -2.39 -0.02 0.25 16 40 H 0.42 2.15 8.84 -92.70 -0.82 1.33 16 41 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.11 1.73 6.02 -2.39 -0.01 1.71 16 43 H 0.01 0.46 6.79 -2.38 -0.02 0.44 16 44 H 0.09 2.71 8.11 -2.39 -0.02 2.69 16 Total: -1.00 -79.99 352.35 -4.13 -84.12 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -0.50 Total: 17.47 kcal Atomic # 6 Polarization: 17.67 SS G_CDS: 5.89 Total: 23.56 kcal Atomic # 7 Polarization: -112.01 SS G_CDS: -11.25 Total: -123.26 kcal Atomic # 8 Polarization: -45.93 SS G_CDS: -0.15 Total: -46.08 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 1.88 Total: 44.19 kcal Total: -79.99 -4.13 -84.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183717688.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.978 kcal (2) G-P(sol) polarization free energy of solvation -79.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds