Wall clock time and date at job start Tue Mar 31 2020 05:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.35845 * 126.45997 * 2 1 4 4 H 0.97003 * 124.91608 * 0.02562 * 3 2 1 5 5 N 1.28455 * 110.16457 * 179.74722 * 3 2 1 6 6 C 1.31926 * 110.21468 * 0.45482 * 5 3 2 7 7 C 1.47526 * 126.46649 * 179.82016 * 6 5 3 8 8 O 1.21589 * 120.00546 * 173.91109 * 7 6 5 9 9 N 1.34777 * 119.99334 * 353.91141 * 7 6 5 10 10 C 1.47511 * 118.75708 * 174.30013 * 9 7 6 11 11 C 1.53568 * 111.03156 * 221.62820 * 10 9 7 12 12 C 1.51534 * 109.57777 * 39.97658 * 11 10 9 13 13 O 1.42079 * 108.75900 * 268.58680 * 12 11 10 14 14 C 1.38020 * 119.43596 * 87.24854 * 13 12 11 15 15 H 1.08996 * 109.46773 * 56.56138 * 14 13 12 16 16 C 1.53005 * 109.46523 * 176.55310 * 14 13 12 17 17 N 1.46500 * 109.47074 * 300.00639 * 16 14 13 18 18 C 1.36942 * 119.99717 * 179.72302 * 17 16 14 19 19 H 1.08001 * 119.99748 * 0.28247 * 18 17 16 20 20 C 1.38816 * 119.99716 * 180.27784 * 18 17 16 21 21 N 1.31612 * 120.00240 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99512 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46915 * 90.00452 * 22 20 18 24 24 H 1.48499 * 109.46971 * 209.99758 * 22 20 18 25 25 H 1.48493 * 109.47313 * 330.00360 * 22 20 18 26 26 C 1.45120 * 118.75952 * 354.31485 * 9 7 6 27 27 C 1.35778 * 126.46239 * 180.02562 * 2 1 3 28 28 O 1.36089 * 127.26558 * 359.97438 * 27 2 1 29 29 H 1.09004 * 109.47272 * 269.97825 * 1 2 3 30 30 H 1.09004 * 109.46812 * 29.97523 * 1 2 3 31 31 H 1.08997 * 109.47307 * 149.97313 * 1 2 3 32 32 H 1.09007 * 109.16300 * 342.02887 * 10 9 7 33 33 H 1.08997 * 109.16658 * 101.22758 * 10 9 7 34 34 H 1.09000 * 109.45047 * 160.00764 * 11 10 9 35 35 H 1.08997 * 109.45405 * 279.94048 * 11 10 9 36 36 H 1.09003 * 109.59365 * 28.37623 * 12 11 10 37 37 H 1.09003 * 109.59019 * 148.81810 * 12 11 10 38 38 H 1.09000 * 109.46761 * 180.02562 * 16 14 13 39 39 H 1.08996 * 109.46920 * 60.00918 * 16 14 13 40 40 H 0.97000 * 120.00403 * 0.02562 * 17 16 14 41 41 H 0.97001 * 120.00282 * 180.02562 * 21 20 18 42 42 H 1.09001 * 109.46125 * 330.70135 * 26 9 7 43 43 H 1.08999 * 109.46347 * 210.73924 * 26 9 7 44 44 H 0.96707 * 113.99607 * 269.99769 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3143 1.0926 0.0000 4 1 2.0045 2.0118 0.0004 5 7 3.5472 0.7321 0.0053 6 6 3.6374 -0.5840 -0.0007 7 6 4.8810 -1.3777 -0.0012 8 8 4.8300 -2.5879 0.1045 9 7 6.0737 -0.7611 -0.1190 10 6 7.3039 -1.5647 0.0112 11 6 8.3625 -0.8216 0.8392 12 6 7.6944 -0.1160 2.0019 13 8 7.3509 1.2027 1.5997 14 6 6.1388 1.4285 0.9792 15 1 5.3312 1.0745 1.6200 16 6 5.9679 2.9275 0.7245 17 7 6.0054 3.6470 2.0000 18 6 5.8773 5.0103 2.0211 19 1 5.7442 5.5545 1.0978 20 6 5.9186 5.6926 3.2293 21 7 6.0813 5.0295 4.3544 22 14 5.7432 7.5522 3.2581 23 1 4.3084 7.9120 3.3883 24 1 6.4982 8.1027 4.4122 25 1 6.2835 8.1199 1.9968 26 6 6.0992 0.6682 -0.3686 27 6 2.3139 -1.0920 -0.0005 28 8 1.9326 -2.3984 -0.0006 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8903 -0.5135 31 1 -0.3634 -0.8897 -0.5142 32 1 7.0645 -2.5088 0.5007 33 1 7.7046 -1.7689 -0.9816 34 1 9.0930 -1.5357 1.2192 35 1 8.8661 -0.0878 0.2100 36 1 6.7928 -0.6572 2.2887 37 1 8.3817 -0.0727 2.8468 38 1 5.0105 3.1059 0.2349 39 1 6.7755 3.2815 0.0837 40 1 6.1252 3.1583 2.8293 41 1 6.1097 5.5062 5.1987 42 1 5.2053 0.9562 -0.9219 43 1 6.9843 0.9190 -0.9532 44 1 1.8228 -2.7761 0.8829 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200259504.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:58 Heat of formation + Delta-G solvation = -12.401742 kcal Electronic energy + Delta-G solvation = -29072.686905 eV Core-core repulsion = 25028.495620 eV Total energy + Delta-G solvation = -4044.191284 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.84964 -40.22460 -38.36708 -37.26063 -35.24516 -34.71646 -33.34493 -32.46234 -31.20508 -30.72322 -28.64662 -27.21151 -26.55027 -25.33638 -23.88402 -22.51741 -21.45517 -21.11437 -20.83281 -19.14270 -18.41914 -17.24341 -17.14941 -16.76927 -16.45624 -16.35223 -15.93619 -15.48040 -14.84179 -14.54832 -14.38458 -14.26560 -13.93609 -13.65879 -13.41115 -13.17571 -13.05999 -13.00486 -12.81030 -12.55156 -12.23091 -12.14179 -11.78965 -11.32019 -11.17447 -10.90993 -10.80065 -10.68953 -10.44425 -10.25497 -10.04083 -9.87936 -9.68065 -9.41433 -9.27697 -8.84453 -8.82323 -8.42804 -6.83925 -5.70503 -2.98177 1.44653 1.72806 2.59844 2.95220 3.29319 3.44260 3.49779 3.51944 4.02457 4.08479 4.42402 4.53611 4.61540 4.69858 4.85241 4.95075 5.13972 5.20034 5.21148 5.32415 5.37508 5.51548 5.52687 5.57878 5.62028 5.62779 5.74023 5.77552 5.89454 5.97869 6.11812 6.17659 6.21955 6.37312 6.52955 6.70832 6.81530 6.86118 7.31177 7.54884 7.69026 7.72430 8.10860 8.16878 8.48060 9.59374 10.19921 10.55684 11.52401 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.011348 B = 0.004434 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.863411 B = 6313.469385 C = 8276.896671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.010 4.010 3 N -0.368 5.368 4 H 0.453 0.547 5 N -0.221 5.221 6 C -0.039 4.039 7 C 0.599 3.401 8 O -0.531 6.531 9 N -0.597 5.597 10 C 0.113 3.887 11 C -0.165 4.165 12 C 0.074 3.926 13 O -0.371 6.371 14 C 0.097 3.903 15 H 0.051 0.949 16 C 0.171 3.829 17 N -0.725 5.725 18 C -0.236 4.236 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.292 1.292 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.071 3.929 27 C 0.043 3.957 28 O -0.454 6.454 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.045 0.955 37 H 0.088 0.912 38 H 0.035 0.965 39 H 0.022 0.978 40 H 0.387 0.613 41 H 0.254 0.746 42 H 0.107 0.893 43 H 0.080 0.920 44 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.096 -13.994 -9.756 18.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.136 4.136 3 N -0.086 5.086 4 H 0.299 0.701 5 N -0.059 5.059 6 C -0.199 4.199 7 C 0.386 3.614 8 O -0.406 6.406 9 N -0.330 5.330 10 C -0.009 4.009 11 C -0.204 4.204 12 C -0.003 4.003 13 O -0.289 6.289 14 C 0.037 3.963 15 H 0.068 0.932 16 C 0.043 3.957 17 N -0.369 5.369 18 C -0.367 4.367 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.581 5.581 22 Si 0.736 3.264 23 H -0.219 1.219 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.053 4.053 27 C -0.013 4.013 28 O -0.259 6.259 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.064 0.936 37 H 0.107 0.893 38 H 0.053 0.947 39 H 0.040 0.960 40 H 0.220 0.780 41 H 0.064 0.936 42 H 0.125 0.875 43 H 0.099 0.901 44 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -6.311 -13.409 -10.351 18.076 hybrid contribution -0.779 0.471 0.797 1.210 sum -7.090 -12.938 -9.554 17.576 Atomic orbital electron populations 1.20317 0.86096 1.04112 1.03460 1.21567 0.95432 0.87428 1.09145 1.43330 1.03011 1.09554 1.52694 0.70071 1.74035 1.01074 1.13525 1.17227 1.22268 0.95096 0.90281 1.12258 1.16994 0.81738 0.86232 0.76482 1.90773 1.86473 1.12918 1.50462 1.47766 1.05423 1.09340 1.70454 1.21837 0.83792 0.94759 1.00465 1.22508 0.98203 1.00754 0.98898 1.22091 0.98740 0.83767 0.95656 1.86409 1.37583 1.27569 1.77296 1.22181 0.85894 0.96860 0.91364 0.93155 1.20553 0.97948 0.86515 0.90671 1.42234 1.87812 1.04108 1.02790 1.19222 1.41426 0.83325 0.92734 0.91310 1.24717 1.03199 0.97673 0.95444 1.69676 1.57163 1.34222 0.97008 0.86222 0.77375 0.85845 0.76940 1.21926 1.21830 1.20808 1.22853 1.04368 0.78442 0.99675 1.17709 0.88955 0.84962 1.09631 1.84859 1.88802 1.19362 1.32921 0.90196 0.90805 0.89420 0.89223 0.91612 0.89710 0.90066 0.93617 0.89346 0.94742 0.96005 0.77952 0.93644 0.87526 0.90122 0.75963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.44 36.01 0.38 -0.16 16 2 C -0.01 -0.10 7.27 -81.70 -0.59 -0.70 16 3 N -0.37 -4.04 6.87 33.71 0.23 -3.81 16 4 H 0.45 3.73 8.96 -190.44 -1.71 2.03 16 5 N -0.22 -3.07 7.42 33.45 0.25 -2.83 16 6 C -0.04 -0.58 6.68 -82.69 -0.55 -1.13 16 7 C 0.60 9.62 7.62 -12.47 -0.10 9.52 16 8 O -0.53 -9.48 15.89 3.49 0.06 -9.42 16 9 N -0.60 -8.65 2.19 -173.70 -0.38 -9.03 16 10 C 0.11 1.39 6.12 -3.19 -0.02 1.37 16 11 C -0.17 -1.93 5.79 -27.18 -0.16 -2.09 16 12 C 0.07 1.10 6.37 36.42 0.23 1.33 16 13 O -0.37 -6.89 9.18 -26.55 -0.24 -7.14 16 14 C 0.10 1.72 2.04 -25.78 -0.05 1.67 16 15 H 0.05 0.98 7.28 -51.93 -0.38 0.60 16 16 C 0.17 3.52 5.95 -4.04 -0.02 3.49 16 17 N -0.73 -18.80 5.49 -59.90 -0.33 -19.13 16 18 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 19 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -28.58 13.06 55.49 0.72 -27.85 16 22 Si 0.90 22.38 29.55 -169.99 -5.02 17.36 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 C 0.07 1.04 4.41 -3.83 -0.02 1.03 16 27 C 0.04 0.57 7.28 -39.12 -0.28 0.28 16 28 O -0.45 -5.59 13.21 -21.82 -0.29 -5.87 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 1.14 7.07 -51.93 -0.37 0.77 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.99 8.01 -51.93 -0.42 0.57 16 36 H 0.05 0.70 7.40 -51.93 -0.38 0.32 16 37 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.39 10.86 7.53 -40.82 -0.31 10.55 16 41 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.11 1.55 5.32 -51.93 -0.28 1.27 16 43 H 0.08 1.12 8.11 -51.93 -0.42 0.69 16 44 H 0.39 3.23 9.07 45.56 0.41 3.64 16 LS Contribution 359.66 15.07 5.42 5.42 Total: -1.00 -36.29 359.66 -7.79 -44.08 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -6.77 Total: 10.88 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: -1.43 Total: 7.34 kcal Atomic # 7 Polarization: -63.14 SS G_CDS: 0.49 Total: -62.65 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.48 Total: -22.43 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.29 -7.79 -44.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200259504.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.679 kcal (2) G-P(sol) polarization free energy of solvation -36.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds