Wall clock time and date at job start Tue Mar 31 2020 05:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.35845 * 126.45997 * 2 1 4 4 H 0.97003 * 124.91608 * 0.02562 * 3 2 1 5 5 N 1.28455 * 110.16457 * 179.74722 * 3 2 1 6 6 C 1.31926 * 110.21468 * 0.45482 * 5 3 2 7 7 C 1.47526 * 126.46649 * 179.82016 * 6 5 3 8 8 O 1.21589 * 120.00546 * 173.91109 * 7 6 5 9 9 N 1.34777 * 119.99334 * 353.91141 * 7 6 5 10 10 C 1.47511 * 118.75708 * 174.30013 * 9 7 6 11 11 C 1.53568 * 111.03156 * 221.62820 * 10 9 7 12 12 C 1.51534 * 109.57777 * 39.97658 * 11 10 9 13 13 O 1.42079 * 108.75900 * 268.58680 * 12 11 10 14 14 C 1.38020 * 119.43596 * 87.24854 * 13 12 11 15 15 H 1.08996 * 109.46773 * 56.56138 * 14 13 12 16 16 C 1.53005 * 109.46523 * 176.55310 * 14 13 12 17 17 N 1.46500 * 109.47074 * 300.00639 * 16 14 13 18 18 C 1.36942 * 119.99717 * 179.72302 * 17 16 14 19 19 H 1.08001 * 119.99748 * 0.28247 * 18 17 16 20 20 C 1.38816 * 119.99716 * 180.27784 * 18 17 16 21 21 N 1.31612 * 120.00240 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99512 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46915 * 90.00452 * 22 20 18 24 24 H 1.48499 * 109.46971 * 209.99758 * 22 20 18 25 25 H 1.48493 * 109.47313 * 330.00360 * 22 20 18 26 26 C 1.45120 * 118.75952 * 354.31485 * 9 7 6 27 27 C 1.35778 * 126.46239 * 180.02562 * 2 1 3 28 28 O 1.36089 * 127.26558 * 359.97438 * 27 2 1 29 29 H 1.09004 * 109.47272 * 269.97825 * 1 2 3 30 30 H 1.09004 * 109.46812 * 29.97523 * 1 2 3 31 31 H 1.08997 * 109.47307 * 149.97313 * 1 2 3 32 32 H 1.09007 * 109.16300 * 342.02887 * 10 9 7 33 33 H 1.08997 * 109.16658 * 101.22758 * 10 9 7 34 34 H 1.09000 * 109.45047 * 160.00764 * 11 10 9 35 35 H 1.08997 * 109.45405 * 279.94048 * 11 10 9 36 36 H 1.09003 * 109.59365 * 28.37623 * 12 11 10 37 37 H 1.09003 * 109.59019 * 148.81810 * 12 11 10 38 38 H 1.09000 * 109.46761 * 180.02562 * 16 14 13 39 39 H 1.08996 * 109.46920 * 60.00918 * 16 14 13 40 40 H 0.97000 * 120.00403 * 0.02562 * 17 16 14 41 41 H 0.97001 * 120.00282 * 180.02562 * 21 20 18 42 42 H 1.09001 * 109.46125 * 330.70135 * 26 9 7 43 43 H 1.08999 * 109.46347 * 210.73924 * 26 9 7 44 44 H 0.96707 * 113.99607 * 269.99769 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3143 1.0926 0.0000 4 1 2.0045 2.0118 0.0004 5 7 3.5472 0.7321 0.0053 6 6 3.6374 -0.5840 -0.0007 7 6 4.8810 -1.3777 -0.0012 8 8 4.8300 -2.5879 0.1045 9 7 6.0737 -0.7611 -0.1190 10 6 7.3039 -1.5647 0.0112 11 6 8.3625 -0.8216 0.8392 12 6 7.6944 -0.1160 2.0019 13 8 7.3509 1.2027 1.5997 14 6 6.1388 1.4285 0.9792 15 1 5.3312 1.0745 1.6200 16 6 5.9679 2.9275 0.7245 17 7 6.0054 3.6470 2.0000 18 6 5.8773 5.0103 2.0211 19 1 5.7442 5.5545 1.0978 20 6 5.9186 5.6926 3.2293 21 7 6.0813 5.0295 4.3544 22 14 5.7432 7.5522 3.2581 23 1 4.3084 7.9120 3.3883 24 1 6.4982 8.1027 4.4122 25 1 6.2835 8.1199 1.9968 26 6 6.0992 0.6682 -0.3686 27 6 2.3139 -1.0920 -0.0005 28 8 1.9326 -2.3984 -0.0006 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8903 -0.5135 31 1 -0.3634 -0.8897 -0.5142 32 1 7.0645 -2.5088 0.5007 33 1 7.7046 -1.7689 -0.9816 34 1 9.0930 -1.5357 1.2192 35 1 8.8661 -0.0878 0.2100 36 1 6.7928 -0.6572 2.2887 37 1 8.3817 -0.0727 2.8468 38 1 5.0105 3.1059 0.2349 39 1 6.7755 3.2815 0.0837 40 1 6.1252 3.1583 2.8293 41 1 6.1097 5.5062 5.1987 42 1 5.2053 0.9562 -0.9219 43 1 6.9843 0.9190 -0.9532 44 1 1.8228 -2.7761 0.8829 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200259504.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:57 Heat of formation + Delta-G solvation = -41.035658 kcal Electronic energy + Delta-G solvation = -29073.928565 eV Core-core repulsion = 25028.495620 eV Total energy + Delta-G solvation = -4045.432944 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.80414 -41.43391 -39.66983 -38.19354 -36.68773 -36.26422 -34.69268 -33.51131 -32.72877 -31.90271 -30.16598 -28.13806 -27.58011 -26.90839 -25.24598 -24.17683 -22.49927 -22.34194 -22.04579 -20.23680 -19.44558 -19.17595 -18.19467 -17.89094 -17.68773 -17.57501 -16.99612 -16.67532 -16.57376 -15.91444 -15.72550 -15.29292 -15.10796 -14.83278 -14.77242 -14.63818 -14.47590 -13.87771 -13.75322 -13.65993 -13.41873 -13.28680 -13.21363 -12.80159 -12.70478 -12.37751 -12.26117 -12.10873 -11.90982 -11.77169 -11.59693 -11.41119 -11.04760 -10.92283 -10.54852 -10.42090 -9.76782 -9.61655 -8.94256 -7.89482 -5.18028 0.36502 0.85215 1.49020 1.51465 1.59976 1.67324 1.95363 2.14443 2.59343 2.77451 3.02367 3.44533 3.55907 3.67977 3.71627 3.82926 3.89505 4.05812 4.08222 4.16407 4.33091 4.35777 4.45439 4.46572 4.57591 4.71312 4.74995 4.76191 4.80813 4.86180 4.95933 4.99007 5.10825 5.14776 5.21913 5.26786 5.44387 5.52447 5.97546 6.16518 6.30873 6.68738 6.77188 6.78828 6.99525 7.37588 8.14112 8.38581 9.34581 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.011348 B = 0.004434 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.863411 B = 6313.469385 C = 8276.896671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.011 3.989 3 N -0.360 5.360 4 H 0.464 0.536 5 N -0.240 5.240 6 C -0.066 4.066 7 C 0.593 3.407 8 O -0.558 6.558 9 N -0.596 5.596 10 C 0.109 3.891 11 C -0.152 4.152 12 C 0.069 3.931 13 O -0.399 6.399 14 C 0.112 3.888 15 H 0.029 0.971 16 C 0.171 3.829 17 N -0.738 5.738 18 C -0.239 4.239 19 H 0.080 0.920 20 C -0.077 4.077 21 N -0.972 5.972 22 Si 0.974 3.026 23 H -0.285 1.285 24 H -0.299 1.299 25 H -0.268 1.268 26 C 0.085 3.915 27 C 0.019 3.981 28 O -0.464 6.464 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.115 0.885 35 H 0.082 0.918 36 H 0.033 0.967 37 H 0.096 0.904 38 H 0.050 0.950 39 H 0.022 0.978 40 H 0.372 0.628 41 H 0.249 0.751 42 H 0.111 0.889 43 H 0.094 0.906 44 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.744 -13.531 -11.140 19.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.116 4.116 3 N -0.079 5.079 4 H 0.313 0.687 5 N -0.079 5.079 6 C -0.225 4.225 7 C 0.380 3.620 8 O -0.435 6.435 9 N -0.327 5.327 10 C -0.012 4.012 11 C -0.190 4.190 12 C -0.007 4.007 13 O -0.318 6.318 14 C 0.052 3.948 15 H 0.047 0.953 16 C 0.044 3.956 17 N -0.380 5.380 18 C -0.371 4.371 19 H 0.097 0.903 20 C -0.269 4.269 21 N -0.623 5.623 22 Si 0.803 3.197 23 H -0.212 1.212 24 H -0.226 1.226 25 H -0.193 1.193 26 C -0.040 4.040 27 C -0.037 4.037 28 O -0.271 6.271 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.134 0.866 35 H 0.100 0.900 36 H 0.052 0.948 37 H 0.114 0.886 38 H 0.068 0.932 39 H 0.040 0.960 40 H 0.203 0.797 41 H 0.058 0.942 42 H 0.129 0.871 43 H 0.112 0.888 44 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -6.953 -12.944 -11.783 18.834 hybrid contribution -0.615 0.273 1.226 1.399 sum -7.569 -12.671 -10.556 18.146 Atomic orbital electron populations 1.20494 0.82994 1.05494 1.04771 1.22064 0.96944 0.86169 1.06383 1.43445 1.02440 1.10438 1.51583 0.68705 1.73926 1.02549 1.13197 1.18179 1.22326 0.95497 0.90857 1.13837 1.17265 0.82504 0.86139 0.76067 1.90739 1.86956 1.13920 1.51904 1.47839 1.05847 1.09204 1.69829 1.22020 0.83148 0.94312 1.01690 1.22416 0.98157 1.00985 0.97428 1.22282 0.98615 0.82387 0.97375 1.86339 1.37677 1.29955 1.77849 1.21882 0.85075 0.95262 0.92561 0.95295 1.20698 0.98442 0.87969 0.88476 1.42429 1.87781 1.03813 1.04005 1.19670 1.39841 0.84497 0.93085 0.90259 1.25564 1.03870 1.02329 0.95143 1.69854 1.59119 1.35926 0.97443 0.85129 0.77349 0.80250 0.76958 1.21183 1.22621 1.19331 1.22653 1.05208 0.78309 0.97793 1.17956 0.88866 0.85834 1.11040 1.84811 1.88643 1.19328 1.34346 0.88761 0.88549 0.88876 0.89694 0.89591 0.86632 0.89979 0.94849 0.88613 0.93201 0.95991 0.79705 0.94224 0.87107 0.88768 0.74419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.44 71.24 0.74 -0.08 16 2 C 0.01 0.22 7.27 41.37 0.30 0.52 16 3 N -0.36 -7.49 6.87 -47.26 -0.32 -7.81 16 4 H 0.46 6.94 8.96 -219.99 -1.97 4.96 16 5 N -0.24 -6.60 7.42 -48.09 -0.36 -6.95 16 6 C -0.07 -1.97 6.68 42.45 0.28 -1.69 16 7 C 0.59 19.19 7.62 86.69 0.66 19.85 16 8 O -0.56 -20.20 15.89 -2.27 -0.04 -20.23 16 9 N -0.60 -16.98 2.19 -821.73 -1.80 -18.78 16 10 C 0.11 2.55 6.12 86.38 0.53 3.08 16 11 C -0.15 -3.30 5.79 30.30 0.18 -3.12 16 12 C 0.07 2.04 6.37 71.50 0.46 2.49 16 13 O -0.40 -14.92 9.18 -117.92 -1.08 -16.00 16 14 C 0.11 4.00 2.04 31.21 0.06 4.06 16 15 H 0.03 1.16 7.28 -2.39 -0.02 1.14 16 16 C 0.17 6.97 5.95 86.38 0.51 7.48 16 17 N -0.74 -38.58 5.49 -343.44 -1.89 -40.47 16 18 C -0.24 -13.37 9.99 84.03 0.84 -12.53 16 19 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 20 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 21 N -0.97 -60.61 13.06 21.65 0.28 -60.33 16 22 Si 0.97 45.93 29.55 68.60 2.03 47.96 16 23 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 24 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 25 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 26 C 0.08 2.43 4.41 87.25 0.38 2.82 16 27 C 0.02 0.49 7.28 22.57 0.16 0.65 16 28 O -0.46 -11.29 13.21 -92.84 -1.23 -12.52 16 29 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 2.10 7.07 -2.38 -0.02 2.08 16 33 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.08 1.82 8.01 -2.39 -0.02 1.80 16 36 H 0.03 1.05 7.40 -2.39 -0.02 1.03 16 37 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.37 21.41 7.53 -92.71 -0.70 20.71 16 41 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 42 H 0.11 3.13 5.32 -2.39 -0.01 3.12 16 43 H 0.09 2.45 8.11 -2.39 -0.02 2.44 16 44 H 0.40 6.67 9.07 -74.05 -0.67 6.00 16 Total: -1.00 -78.86 359.66 -1.09 -79.95 By element: Atomic # 1 Polarization: 37.91 SS G_CDS: -2.27 Total: 35.64 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: 5.58 Total: 19.55 kcal Atomic # 7 Polarization: -130.26 SS G_CDS: -4.08 Total: -134.34 kcal Atomic # 8 Polarization: -46.41 SS G_CDS: -2.35 Total: -48.76 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -78.86 -1.09 -79.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200259504.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.914 kcal (2) G-P(sol) polarization free energy of solvation -78.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds